G53461


Basic Information

Item Value
gene id G53461
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 27157470 ~ 27159414 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU71475
CTAATAACATTTATTTCCCCAACTGATTCCTTGTTCCCCAAAATTTAGTCTTTCCAGGACCTAAACAACTACATCACTTTTCAGACCTCATTTTTTGAATaacaaaagacacaaagaaCACGCTTAAATAGTCTTTATTTCATTTGATCCATCTTCTGTCCGTGTGCCCTAACACCAGAACCACTGATGAGACAGTGTAGCGAAGCTGTAATAATCATGCAGGGGGTCAAACCTGGTTCAACAATAGAAACTGTGAAACTTGACACATTTTCACCAAGGTACTGAAATTCCCAGGCAACTGTGAAGCGTGctttttaaattgaatataaTCAATAACACCTGACCGTTACAAACACCACCAGCAAACTTCTGATCAGCAGCTCTGGTTAGTGGCCTGTATGTATTCACTGTTCATCAGAGGAGACATCCTTTAAATGCATCTCATGATTCAAGTACACAGCTTACCATAAATCCCTATGTACAGTCTATACATGTGTACATGCACATGGATAGATTGTATGACCCACCAACCtgaatttaaaaatatacatgaaaaaaaataaaaatagaaattctTCTCGTTATCAGTATCCCATCATTGTGTCTGTAAACAGTTCTTAGCatttttcctaaaaaaaaaaaaaaatattatcacACAGTACTGTTCTTTTAATAAATTAGAAGGTAAAATACAATTATCCACCAGAAatgattaaaacatttttccTTTCCAAAAAAATAGTAATACAAAGATGACAACATTACCTCTttaatttgatttttaaaattaGGCATCTTCGTGTTTATGCGTTTTATTTCATGATGTTAAAtaaaattcaattaaaaacactcacaaaaacaccacacacattttcttttaggTTGCATTGTTTGTAAAGTCAGTTTCTGGTTTGGCAGTTGGAAGCAGCCACTCTGGGTGGAAAAACAGACGACGACTGAGGGAATAACGAGGAATATTTAGTTCAGAGTGGAGAAGAGTTTTTCCGGAATATTGTGGCTCTTTTTGGCTTTGTGTTACAGAAGCTGATCTAACATTAAACTTCACAGACTTACCAGGACTGATTATGTCCAGGAAAAGCAGCTTTATGGTGGAAACCGAAGTCAATAAttaggattaaaaaaataaaataaaaaaaaagacttgactGATCTGTCAAGCCACCAGGCAGCAGTTCAAGATGAGTATCAGAAACGATACACATCAGCACCAAAGAGGGTTTCAGTGACCATAACATGGACGGCTTCCACAGATCTCAAATCTACCATAAAGCTTCAAAATGTTGGGAGTCTTACAATGACACTTAATACTATACTTTCTCTGTACTTCTATtgataaaattaataaaaaagataattttgatATCTGAAGACTgcatttcttttcctctcctgtgTAATGAAGTTGTTGCAACCCCACGTAAAAAACGTTTAGCATTGTTTTACAGTTCATATCCACTATGAAGCCTCGGAACAGTAAATTGCCTTTTAACAGTGGGGGCCAAATTTTATAATTGTTGGGTGTCTTAAATCTGGAGGATTAGTTTTTTCAGGTGAAGTGcacaaaggaaaaaaagccCTGTTTAGAGTTTGTTGAGTCTTTGTGCGTCTGACAGCTGAAACGTTGAAGGCATCATTTTGTATCCATCTCAATACAGCCCGAGGAGTTCCGTGTACTGTACACTCATCCGTTCACTCCATCCCCGTCAGTCTCTCACATGACATCAGCCCGTTTGTCCCGGACTTTGTTCCTCTGTTTAGTCCTGGCCTTAAAAGCAGCCGAGTTGAAAAGATGCTGTTGGAGAAAAATACAATCACATACACACTCCAAGATCAGAGTGTTTCAGTGTGCGGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71475 True 1874 lncRNA 0.37 2 27157470 27159414

Neighbor

gene id symbol gene type direction distance location
sema3bl sema3g coding upstream 194577 26901475 ~ 26962893 (+)
LOC120559520 NA coding upstream 305762 26812221 ~ 26851708 (+)
actr8 actr8 coding upstream 365076 26785790 ~ 26792394 (+)
LOC120559767 NA coding upstream 374438 26775810 ~ 26783032 (+)
cacna1db cacna1d coding upstream 402179 26659171 ~ 26755291 (+)
trnam-cau_2 NA coding downstream 216809 27376223 ~ 27376294 (+)
trnam-cau_3 NA coding downstream 219482 27378896 ~ 27378967 (+)
si:dkey-72l14.3 LOC100706739,LOC101069958,LOC103385031,LOC104952267 coding downstream 547082 27706496 ~ 27724463 (+)
trnar-ccu_1 NA coding downstream 603951 27763365 ~ 27763437 (+)
trnar-ccu_2 NA coding downstream 633078 27792492 ~ 27792564 (+)
G53445 NA non-coding upstream 163788 26989829 ~ 26993682 (+)
G53418 NA non-coding upstream 333849 26820661 ~ 26823621 (+)
G53285 NA non-coding upstream 525863 26627296 ~ 26631607 (+)
LOC120559830 NA non-coding upstream 734411 26414885 ~ 26423059 (+)
G53248 LOC101164642,LOC104966947,LOC100690915,LOC102195969,LOC104926428,LOC101062277 non-coding upstream 755042 26397199 ~ 26402428 (+)
G53487 NA non-coding downstream 94189 27253603 ~ 27255190 (+)
G53569 impdh2,LOC102785462 non-coding downstream 399539 27558953 ~ 27630584 (+)
G53586 arih2,LOC102785176 non-coding downstream 479432 27638846 ~ 27643964 (+)
G53588 NA non-coding downstream 485342 27644756 ~ 27647329 (+)
G53596 NA non-coding downstream 502234 27661648 ~ 27662098 (+)
G53305 NA other upstream 356724 26800096 ~ 26800746 (+)
LOC120559571 vapb,LOC100711919,LOC102796136,LOC101481364 other upstream 620119 26483532 ~ 26537351 (+)
gnas gnas,LOC102796627,LOC104936173 other upstream 633582 26490442 ~ 26523888 (+)
atp5f1e NA other upstream 712580 26443050 ~ 26444890 (+)
LOC120559113 LOC108236696,LOC104966950,LOC103362773,LOC103384494 other upstream 774423 26378192 ~ 26383047 (+)
si:dkey-20d21.12 LOC101471973,LOC106098224,LOC107390607 other downstream 25080 27184494 ~ 27187943 (+)
G53488 NA other downstream 95960 27255374 ~ 27255716 (+)
LOC120559859 LOC101468803,LOC100690459 other downstream 252838 27412252 ~ 27417459 (+)
LOC120559343 NA other downstream 426111 27585525 ~ 27595409 (+)
bsna bsn,LOC102782891,LOC106513106 other downstream 794985 27954399 ~ 28143801 (+)

Expression


Co-expression Network