LOC120559859 (LOC101468803,LOC100690459)


Basic Information

Item Value
gene id LOC120559859
gene name LOC101468803,LOC100690459
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 27412252 ~ 27417459 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU71594
GGGAGGATAAGGTTGAGCCTGCCGCCTGGCCGTTAGGTACCGGGGTCCAGCTAACTTCACCGGTTAACTATGCCCGGAAAATGTAAATTCCAGGACTCCTGGCTCTCAAAGACAATTTACAAGGACTGGCTGGTTAAGGACGTCCATGACATTCACTTCGCCCGATGCAGGGCCTGTTGTAAATCAATCAAACTTCAGACCATGGGCGAGGCTGCTCTCACCAGCCACGCAGGGGGAGCTGGCCACAAAGCAGCCGTACGCAAGCTAATGGAAGACTGAGGACAGCAAGGAGCAAGTGGCCATCTGCCTCCAGCGTGACGCTTTGGACAGAATAACGGGCAGCGACTGGTCCAGTCGGCGCCAGAGCCCCACTACAAACTCCACCTACCACAATGCAGAGCTACAGGATGTGACATTTGCTACTTACTTCACAGCACCAGGCAGGTACCGGCTCAACAACCAGCGTCTCCAGCTGACGGGCAGCGAGGCGGAGGACGCGACCCGCAGCCCGACTCGGCACTACTCGGCAGACCTGTCGAGactggagcagcagcagagagtagaagctctggagcagcagcagcagatgaaGATCCTGGAGTGGGAGAACAGGATGAAGGTGCTGGCGTGGGAGCAGGAGCTGgtgaaggagaagaggagagccGCTCGGCAAAAGGAGAAGGCCTTCAGGATGAAGAAGGCTTACTACAAAGCCAAGCTAAAGAGGATGGGCGAGGACCTGCCGCCATCGTCCTCCAGCAGCAGTGATGAAGAGGAGAAAACATCTGATCTGACAGGATGAACTGTTTCAACTGTTGTATTTTTATTAGTgcagtgtatttttttgtttgtctataTGCCATGGAACTGTTActatttttatacattgttttgtatttcaatgcaaaagaaaaattCTCAGTTGCTTTTAATTAGATATTCTTGCACAAAGAGGGAACATCACTGATTATTGAGATAACTTGGGTTGCAGACTACTCAAAAGTACAaatgttcatatatatatatatatatatatatatatatatatatatattacatattgtcaAACTAGCAAACAATCTCTCTGCAACATGATAACCACCTTCTCTGAGTAAGATTTGCAAAGATATTAAACTAAACTGTTAGTTGAGTACAATGCTTCATTTAAGATCAACCCAAGTAAAAGATGTGGTACTACTAGACCTACAGAAGTACATGGATATGCTATGAAGCAGATGAACATCTTGTAGAAAAGCCTCCGACATGTAAAAGCGTTGAGATCAAAATCCATATCATCTTGTTTTATCTGTTATTCGTCACAATGTGTCTTCAGTATTCAAACTTACATGATGTGAGGTTAATAGTGTATGTAAAGTCCATAGCCTTATTTTAGGAAGAACAGCATTTTAAAGAATGTATGAAATGACGTTCGTAAATGGACATTCTAATCATTTGACTTGCATAGCTTCTTTTGCATGTTAACGTGAATAGGTATGCTTACACTTTAGTCTTTGCTTTGTAAATAAATTTGCATTTGGTACAGAGTTGGAGATGACAATAGGCAGGTGacaaatcaaagaaaaaaacCTAAAGACATACACATGGCCAAAAGTACAGTATGTGGCCGCAATGGCAGCCTCTGCTGATTTTTGGACCCGTCAGCAGGAATTTGCTACAAAAGCATTAATTGCTATGTTGGTATAGTTACGTGCTTTAACTATTTcggagctttagaggtgctagtAGGCACATTTTTAAACTCTGGACAGAAGGCCTGCTGATTCCCCCTGCTTCCATTCGTTAACTAAACTAAGCTCATTGCTTCCTGGCTTCAATGCAGAGACAGAGTAGTACTGATCTTCATATCTAACTCGTCAAAAAAATGTaagcaaaatatctctttttCACCCTTATGTGTTACAGCAAACATTTCTTTGTATTGTACTAGCTGCGACTAAGTCATACTATTACAAAACTGACCGGAGCATTGATCGGTTGTAGTTTCAGCCCCTGCAGGTCTAAATCTAAAGTTTATTCAAGGCCTAGTTATATTGTCTCAGCTGGTGCGTCTGTTTTTGCTGAGAGTCAGCAGAGGTGGCATCTGAACATCTCTGACGCCTCTGAATGTGACAGAATACTTGTCAGAGAGAgagccctccagaaaaacgtgttcCTCTGTCAGGACGTTTCCTCTGCTCACTTTTCTGCACATGGAAATGTCTGTTCTCATGAATATGAAACAGCACACGCAGAATAAATATGAACACAGC
>XM_039801908.1
TGAACGCAGCAGGAGGCAGGGGAGGATAAGGTTGAGCCTGCCGCCTGGCCGTTAGGTACCGGGGTCCAGCTAACTTCACCGGTTAACTATGCCCGGAAAATGTAAATTCCAGGACTCCTGGCTCTCAAAGACAATTTACAAGGACTGGCTGGTTAAGGACGTCCATGACATTCACTTCGCCCGATGCAGGGCCTGTTGTAAATCAATCAAACTTCAGACCATGGGCGAGGCTGCTCTCACCAGCCACGCAGGGGGAGCTGGCCACAAAGCAGCCGTACGCAAGCTAATGGAAGCATGCAATGTGATGCCGATAAATGCCACTGGGCTGATAAATGGCAGCGTGAATCAGACTGAGGACAGCAAGGAGCAAGTGGCCATCTGCCTCCAGCGTGACGCTTTGGACAGAATAACGGGCAGCGACTGGTCCAGTCGGCGCCAGAGCCCCACTACAAACTCCACCTACCACAATGCAGAGCTACAGGATGTGACATTTGCTACTTACTTCACAGCACCAGGCAGGTACCGGCTCAACAACCAGCGTCTCCAGCTGACGGGCAGCGAGGCGGAGGACGCGACCCGCAGCCCGACTCGGCACTACTCGGCAGACCTGTCGAGactggagcagcagcagagagtagaagctctggagcagcagcagcagatgaaGATCCTGGAGTGGGAGAACAGGATGAAGGTGCTGGCGTGGGAGCAGGAGCTGgtgaaggagaagaggagagccGCTCGGCAAAAGGAGAAGGCCTTCAGGATGAAGAAGGCTTACTACAAAGCCAAGCTAAAGAGGATGGGCGAGGACCTGCCGCCATCGTCCTCCAGCAGCAGTGATGAAGAGGAGAAAACATCTGATCTGACAGGATGAACTGTTTCAACTGTTGTATTTTTATTAGTgcagtgtatttttttgtttgtctataTGCCATGGAACTGTTActatttttatacattgttttgtatttcaatgcaaaagaaaaattCTCAGTTGCTTTTAATTAGATATTCTTGCACAAAGAGGGAACATCACTGATTATTGAGATAACTTGGGTTGCAGACTACTCAAAAGTACAaatgttcatatatatatatatatatatatatatatatatatatatattacatattgtcaAACTAGCAAACAATCTCTCTGCAACATGATAACCACCTTCTCTGAGTAAGATTTGCAAAGATATTAAACTAAACTGTTAGTTGAGTACAATGCTTCATTTAAGATCAACCCAAGTAAAAGATGTGGTACTACTAGACCTACAGAAGTACATGGATATGCTATGAAGCAGATGAACATCTTGTAGAAAAGCCTCCGACATGTAAAAGCGTTGAGATCAAAATCCATATCATCTTGTTTTATCTGTTATTCGTCACAATGTGTCTTCAGTATTCAAACTTACATGATGTGAGGTTAATAGTGTATGTAAAGTCCATAGCCTTATTTTAGGAAGAACAGCATTTTAAAGAATGTATGAAATGACGTTCGTAAATGGACATTCTAATCATTTGACTTGCATAGCTTCTTTTGCATGTTAACGTGAATAGGTATGCTTACACTTTAGTCTTTGCTTTGTAAATAAATTTGCATTTGGTACAGAGTTGGAGATGACAATAGGCAGGTGacaaatcaaagaaaaaaacCTAAAGACATACACATGGCCAAAAGTACAGTATGTGGCCGCAATGGCAGCCTCTGCTGATTTTTGGACCCGTCAGCAGGAATTTGCTACAAAAGCATTAATTGCTATGTTGGTATAGTTACGTGCTTTAACTATTTcggagctttagaggtgctagtAGGCACATTTTTAAACTCTGGACAGAAGGCCTGCTGATTCCCCCTGCTTCCATTCGTTAACTAAACTAAGCTCATTGCTTCCTGGCTTCAATGCAGAGACAGAGTAGTACTGATCTTCATATCTAACTCGTCAAAAAAATGTaagcaaaatatctctttttCACCCTTATGTGTTACAGCAAACATTTCTTTGTATTGTACTAGCTGCGACTAAGTCATACTATTACAAAACTGACCGGAGCATTGATCGGTTGTAGTTTCAGCCCCTGCAGGTCTAAATCTAAAGTTTATTCAAGGCCTAGTTATATTGTCTCAGCTGGTGCGTCTGTTTTTGCTGAGAGTCAGCAGAGGTGGCATCTGAACATCTCTGACGCCTCTGAATGTGACAGAATACTTGTCAGAGAGAgagccctccagaaaaacgtgttcCTCTGTCAGGACGTTTCCTCTGCTCACTTTTCTGCACATGGAAATGTCTGTTCTCATGAATATGAAACAGCACACGCAGAATAAATATGAACACAGCCGTG

Function

NR:

description
uncharacterized protein LOC101468803 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71594 False 2270 TUCP 0.43 3 27412271 27417455
XM_039801908.1 True 2349 mRNA 0.44 4 27412252 27417459

Neighbor

gene id symbol gene type direction distance location
trnam-cau_3 NA coding upstream 33285 27378896 ~ 27378967 (+)
trnam-cau_2 NA coding upstream 35958 27376223 ~ 27376294 (+)
sema3bl sema3g coding upstream 449359 26901475 ~ 26962893 (+)
LOC120559520 NA coding upstream 560544 26812221 ~ 26851708 (+)
actr8 actr8 coding upstream 619858 26785790 ~ 26792394 (+)
si:dkey-72l14.3 LOC100706739,LOC101069958,LOC103385031,LOC104952267 coding downstream 289037 27706496 ~ 27724463 (+)
trnar-ccu_1 NA coding downstream 345906 27763365 ~ 27763437 (+)
trnar-ccu_2 NA coding downstream 375033 27792492 ~ 27792564 (+)
soga1 NA coding downstream 782114 28199573 ~ 28304278 (+)
LOC120559025 NA coding downstream 945717 28363176 ~ 28377171 (+)
G53487 NA non-coding upstream 157062 27253603 ~ 27255190 (+)
G53455 LOC108233118,LOC101063193,LOC101159349,LOC103384990,LOC104941321,LOC103359395 non-coding upstream 204463 27138131 ~ 27207789 (+)
G53461 NA non-coding upstream 252838 27157470 ~ 27159414 (+)
G53445 NA non-coding upstream 418570 26989829 ~ 26993682 (+)
G53418 NA non-coding upstream 588631 26820661 ~ 26823621 (+)
G53569 impdh2,LOC102785462 non-coding downstream 141494 27558953 ~ 27630584 (+)
G53586 arih2,LOC102785176 non-coding downstream 221387 27638846 ~ 27643964 (+)
G53588 NA non-coding downstream 227297 27644756 ~ 27647329 (+)
G53596 NA non-coding downstream 244189 27661648 ~ 27662098 (+)
G53623 NA non-coding downstream 252910 27670369 ~ 27670584 (+)
G53488 NA other upstream 156536 27255374 ~ 27255716 (+)
si:dkey-20d21.12 LOC101471973,LOC106098224,LOC107390607 other upstream 224309 27184494 ~ 27187943 (+)
G53305 NA other upstream 611506 26800096 ~ 26800746 (+)
LOC120559571 vapb,LOC100711919,LOC102796136,LOC101481364 other upstream 874901 26483532 ~ 26537351 (+)
gnas gnas,LOC102796627,LOC104936173 other upstream 888364 26490442 ~ 26523888 (+)
LOC120559343 NA other downstream 168066 27585525 ~ 27595409 (+)
bsna bsn,LOC102782891,LOC106513106 other downstream 536940 27954399 ~ 28143801 (+)
casp9 LOC104954971 other downstream 902178 28319637 ~ 28322779 (+)
G53775 NA other downstream 924463 28341922 ~ 28345916 (+)
LOC120558754 NA other downstream 989812 28407271 ~ 28415747 (+)

Expression


Co-expression Network