LOC120559343


Basic Information

Item Value
gene id LOC120559343
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 27585525 ~ 27595409 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU71624
GTATCACTCAAACATATATTCATGATTTGGGTATTTATTTTATGATTCGAGTCAACTTCAACATGTTAATGAGGCAGGTTATTGGACTCAGCTGAGCGTTAAAGCAGATAGTTCCGGGGTCCCTAGTTCCTATTGGCCGAGTCACGTTATATAGCTATTACTGCGCGAAACAAATCACTCGCACCGCAGCAAACAGTACACCTTTAGCAACTGTCCAGGAACACTGCTGAGTGACATAGACgaataaaatgtcaaagtgtAACAAGTTTGGCGTGTTAACCAGCAATGTTTAACATCGGCGCTATTGCGTTTCATGAAACGGGTTTTAAAGATGGCTCTTTCGGTGCATCTGTAGCGTTAACAGAAAATGATACGGTCTAAAACACCTCGAAATAAGCAATAaccagttaaaaaaatatatactggaAAACCCAACAAGTAGCCCTCAAACCAACCTGTCCGTCTGCATACAGCGTGTTAAGCATCGTGGTCGGCGACAAGAAGTCCCTGTTACGCAGGTTTTTAGCGCTGCTCTCCTTGAACCAAAGCTTCTCCGGTTCAGGGAAGATCCTGTCGCCGTTTTCCCGGCTGGAATCGGGGACATTTTCACGCTTCCCCCGCAGTGCGGAGCTCAGCGCCCGGACGGTAGGGGTGATCCGGAGGGGCGAAGACTCCTCGATATTCTCCATCACCACCACAAAATATAGCTACACAGCGTACAAAATTCCATCGAAGAAAAGGAAAACGACGGTGATGGAGCAAGTCTCTACGTTAGTGTCAGCGACGGTCAGCCAGCTCCGAGAGATGGACGCGTCCATGCAGGTGCAGGAGGACGCCCGACTACAGAGGTTGATGGACCATGAGAAGGAAATGCAGAACAATCTAATGAGCCAGCTGGTGACCATGCATGAAAGGATCAGCCGAGAAAACCACGAAAGAAACCTTGAACTCGTGGACAGGATACTGTCTAGGTTCCCTTCACCTTCAGCACCTTCGGGTCACTAACTGACACTTCCTGTGTGAGCGGCGACGACGACGTACGACAGGGTTATGCAGGTGTAGGGAACACCTCTGTCCCGCTCTCCTCCACCAGCTGACGTTTGCCCAAattcctttattttattttcacactACAGGCCTTCATGCTCCATTCTGGGTCACTGCTCACATTTATAACTATAAACTCCAAATTATGAAGTCCATTTAAATTAGTTTGCTAGACTATAAATTGGTGGATTTACATACTCTTAAAAATATCTGAATGTGTTAATCACAGCATCACATCTGTAGAGAATTTGGAGAATTAACAGCTGCAGTGTGAGCTTTCAGTTTACATGAAAGCTGATGAATGAGTCCCACAAAGGGCATGGATGGATGTACTGCACCTCTCCTGCCACCTCATCTGAGCACGTTGGTGTAAACCACACAAATCACACCAAGCACCACACAAAGCTGCGGTCTTTTGTTGTAGGAAAGTCGTTACTAAGCTCTAGCTTTCATTTGGGATCATTATGCGGTTACAGCTGATCTGAAGTGGGGCGCCAGTAAATGATACCAGTTCCTGGTAATATTTTTGGAATTTAGAGAAAGTGTTGCTTTGTCAAACATTGATGTaaattcaggtgtgtgtgtctgcgtgtgtgtgtgtatctgcgtgtgtgtgtgtatctgcgtgtgtgtgtgtgaatatgtatgtgtatatatactgtatgtatgtgtgtatatactgtatatgtgtgtgtatatgtatgtgtgtgtatatatgtaaccTGAACACTGTAGTAGAAGAGAAGCTGCTCTTCAGTGGTtcatgaatgggagtctatttGTAGCACAGGTAATTCATGGTGATTGATATTGTAAGAAAAATATACAGCTTAACTGATTAGTTTAAAATTCTGAGATTTATTAGAAATATCCATTTAGAAATACTATACAGAAAACAGGaacaatttacattttacaaactgAGAATCTAAAATAATTTGCAGTAAAAGCTTGTGGTTCTGGTGTCATTCTTGGCTGACACGAAATTCCCGGTTGCATTTACGGTTGTCAGCAATCCGGGAGAAAACGTGTCATTGAGGAAAATCACCTTCTGTATCTGACAAACTAAAAATCAGTCATTGCACTCCAATATATCCTGTTCAAAGTGGCAACACAGCATTAAACATAGGCATTACTGGTGTTAGTTTCACTTTCCTTATTAATTTGAGAGAAACAAAACTGTAATTCCACATTGAATGGACCATCTGAATCAGAACGGGTAGAATATAAGCTAAATAGGCTATGGTTTTATACTTGTGGCTCACTCAGCTGGGAGGtgtatttttactgtaaatactttGATATTGTTCTATACTGTTAATaccattgttttaatttttgtttttccttttaa
>TU71625
GTATCACTCAAACATATATTCATGATTTGGGTATTTATTTTATGATTCGAGTCAACTTCAACATGTTAATGAGGCAGGTTATTGGACTCAGCTGAGCGTTAAAGCAGATAGTTCCGGGGTCCCTAGTTCCTATTGGCCGAGTCACGTTATATAGCTATTACTGCGCGAAACAAATCACTCGCACCGCAGCAAACAGTACACCTTTAGCAACTGTCCAGGAACACTGCTGAGTGACATAGACgaataaaatgtcaaagtgtAACAAGTTTGGCGTGTTAACCAGCAATGTTTAACATCGGCGCTATTGCGTTTCATGAAACGGGTTTTAAAGATGGCTCTTTCGGTGCATCTGTAGCGTTAACAGAAAATGATACGGTCTAAAACACCTCGAAATAAGCAATAaccagttaaaaaaatatatactggaAAACCCAACAAGTAGCCCTCAAACCAACCTGTCCGTCTGCATACAGCGTGTTAAGCATCGTGGTCGGCGACAAGAAGTCCCTGTTACGCAGGTTTTTAGCGCTGCTCTCCTTGAACCAAAGCTTCTCCGGTTCAGGGAAGATCCTGTCGCCGTTTTCCCGGCTGGAATCGGGGACATTTTCACGCTTCCCCCGCAGTGCGGAGCTCAGCGCCCGGACGGTAGGGGTGATCCGGAGGGGCGAAGACTCCTCGATATTCTCCATCACCACCACAAAATATAGCTACACAGCGTACAAAATTCCATCGAAGAAAAGGAAAACGACGGTGATGGAGCAAGTCTCTACGTTAGTGTCAGCGACGGTCAGCCAGCTCCGAGAGATGGACGCGTCCATGCAGGTGCAGGAGGACGCCCGACTACAGAGGTTGATGGACCATGAGAAGGAAATGCAGAACAATCTAATGAGCCAGCTGGTGACCATGCATGAAAGGATCAGCCGAGAAAACCACGAAAGAAACCTTGAACTCGTGGACAGGATACTGTCTAGGTTCCCTTCACCTTCAGCACCTTCGGGTCACTAACTGACACTTCCTGTGTGAGCGGCGACGACGACGTACGACAGGGTTATGCAGGTGTAGGGAACACCTCTGTCCCGCTCTCCTCCACCAGCTGACGTTTGCCCAAattcctttattttattttcacactACAGGCCTTCATGCTCCATTCTGGGTCACTGCTCACATTTATAACTATAAACTCCAAATTATGAAGTCCATTTAAATTAGTTTGCTAGACTATAAATTGGTGGATTTACATACTCTTAAAAATATCTGAATGTGTTAATCACAGCATCACATCTGTAGAGAATTTGGAGAATTAACAGCTGCAGTGTGAGCTTTCAGTTTACATGAAAGCTGATGAATGAGTCCCACAAAGGGCATGGATGGATGTACTGCACCTCTCCTGCCACCTCATCTGAGCACGTTGGTGTAAACCACACAAATCACACCAAGCACCACACAAAGCTGCGGTCTTTTGTTGTAGGAAAGTCGTTACTAAGCTCTAGCTTTCATTTGGGATCATTATGCGGTTACAGCTGATCTGAAGTGGGGCGCCAGTAAATGATACCAGTTCCTGGTAATATTTTTGGAATTTAGAGAAAGTGTTGCTTTGTCAAACATTGATGTaaattcaggtgtgtgtgtctgcgtgtgtgtgtgtatctgcgtgtgtgtgtgtatctgcgtgtgtgtgtgtgaatatgtatgtgtatatatactgtatgtatgtgtgtatatactgtatatgtgtgtgtatatgtatgtgtgtgtatatatgtaaccTGAACACTGTAGTAGAAGAGAAGCTGCTCTTCAGTGGTtcatgaatgggagtctatttGTAGCACAGGTAATTCATGGTGATTGATATTGTAAGAAAAATATACAGCTTAACTGATTAGTTTAAAATTCTGAGATTTATTAGAAATATCCATTTAGAAATACTATACAGAAAACAGGaacaatttacattttacaaactgAGAATCTAAAATAATTTGCAGTAAAAGCTTGTGGTTCTGGTGTCATTCTTGGCTGACACGAAATTCCCGGTTGCATTTACGGTTGTCAGCAATCCGGGAGAAAACGTGTCATTGAGGAAAATCACCTTCTGTATCTGACAAACTAAAAATCAGTCATTGCACTCCAATATATCCTGTTCAAAGTGGCAACACAGCATTAAACATAGGCATTACTGGTGTTAGTTTCACTTTCCTTATTAATTTGAGAGAAACAAAACTGTAATTCCACATTGAATGGACCATCTGAATCAGAACGGGTAGAATATAAGCTAAATAGGCTATGGTTTTATACTTGTGGCTCACTCAGCTGGGAGGtgtatttttactgtaaatactttGATATTGTTCTATACTGTTAATaccattgttttaatttttgtttttccttttaagGAACAATAAAGTTTTTAACTGAAATAATATGAATCAATTTTCAAACAAGCTGATTTAAGAAATGCAGACTAATCTGATACGATACCTAATTTGTGATGTTTAAG
>XM_039800993.1
CGGAGCTCAGCGCCCGGACGGTAGGGGTGATCCGGAGGGGCGAAGACTCCTCGATATTCTCCATCACCACCACAAAATATAGCTACACAGctgagTGAGTGATCCTCATATCCTCAATAGACCAGCTTTGAGCACGTCTTCTTCCGGCGCAGACATGTGACGTAAAGGGCGCAAATATACAACAAGGGAGGTGTTTGTAATAAGTTGAGACGCTGGAGCAAAAGAGAAAAGCTTGCATCCATGGAGAAGATGCACAACTGGCAGGAGAACGAAATCAAAGAACTTTTGATCATCCGGGGGTCGGAGGCGATCCGTGACCAGATGACGGGGACGGTGAAGGACTCTGTAGTTTACAACAGGATGACCAAACTGCTGGCGGAGAGGGGGGTGTACAGATCACACATGCAGGTGATCAGCAAACTGAAGGCGCTGAGGAAGCAGTACACCAAGTaccaccagcagaagacccgcTGCGGGAGCGACCGCGTCGACTGGCCGTTTTATGAGCTGTGCCACCGGGTTTTCGGGAATGCCCCCGCGGGGAACCCGGTGAAACGTCAAAGGACTCCCACACCTCCACCGtcgccccctcctcctcctccacctctgcCGCCTGACGTCAGCGAGGAGCATCAGGAGGTTGTAGTCGGGCTTTGGGACGAAGTTGACGACAGGGAGCTTAACAAGCATCTGGGTTCAATGGAGGCAGAGGACGAGGACGAGCAGTACAGCCCACCAGAACAGTTGCAGCCCATTAACACCACGTACAAAATTCCATCGAAGAAAAGGAAAACGACGGTGATGGAGCAAGTCTCTACGTTAGTGTCAGCGACGGTCAGCCAGCTCCGAGAGATGGACGCGTCCATGCAGGTGCAGGAGGACGCCCGACTACAGAGGTTGATGGACCATGAGAAGGAAATGCAGAACAATCTAATGAGCCAGCTGGTGACCATGCATGAAAGGATCAGCCGAGAAAACCACGAAAGAAACCTTGAACTCGTGGACAGGATACTGTCTAGGTTCCCTTCACCTTCAGCACCTTCGGGTCACTAACTGACACTTCCTGTGTGAGCGGCGACGACGACGTACGACAGGGTTATGCAGGTGTAGGGAACACCTCTGTCCCGCTCTCCTCCACCAGCTGACGTTTGCCCAAattcctttattttattttcacactACAGGCCTTCATGCTCCATTCTGGGTCACTGCTCACATTTATAACTATAAACTCCAAATTATGAAGTCCATTTAAATTAGTTTGCTAGACTATAAATTGGTGGATTTACATACTCTTAAAAATATCTGAATGTGTTAATCACAGCATCACATCTGTAGAGAATTTGGAGAATTAACAGCTGCAGTGTGAGCTTTCAGTTTACATGAAAGCTGATGAATGAGTCCCACAAAGGGCATGGATGGATGTACTGCACCTCTCCTGCCACCTCATCTGAGCACGTTGGTGTAAACCACACAAATCACACCAAGCACCACACAAAGCTGCGGTCTTTTGTTGTAGGAAAGTCGTTACTAAGCTCTAGCTTTCATTTGGGATCATTATGCGGTTACAGCTGATCTGAAGTGGGGCGCCAGTAAATGATACCAGTTCCTGGTAATATTTTTGGAATTTAGAGAAAGTGTTGCTTTGTCAAACATTGATGTaaattcaggtgtgtgtgtctgcgtgtgtgtgtgtatctgcgtgtgtgtgtgtatctgcgtgtgtgtgtgtgaatatgtatgtgtatatatactgtatgtatgtgtgtatatactgtatatgtgtgtgtatatgtatgtgtgtgtatatatgtaaccTGAACACTGTAGTAGAAGAGAAGCTGCTCTTCAGTGGTtcatgaatgggagtctatttGTAGCACAGGTAATTCATGGTGATTGATATTGTAAGAAAAATATACAGCTTAACTGATTAGTTTAAAATTCTGAGATTTATTAGAAATATCCATTTAGAAATACTATACAGAAAACAGGaacaatttacattttacaaactgAGAATCTAAAATAATTTGCAGTAAAAGCTTGTGGTTCTGGTGTCATTCTTGGCTGACACGAAATTCCCGGTTGCATTTACGGTTGTCAGCAATCCGGGAGAAAACGTGTCATTGAGGAAAATCACCTTCTGTATCTGACAAACTAAAAATCAGTCATTGCACTCCAATATATCCTGTTCAAAGTGGCAACACAGCATTAAACATAGGCATTACTGGTGTTAGTTTCACTTTCCTTATTAATTTGAGAGAAACAAAACTGTAATTCCACATTGAATGGACCATCTGAATCAGAACGGGTAGAATATAAGCTAAATAGGCTATGGTTTTATACTTGTGGCTCACTCAGCTGGGAGGtgtatttttactgtaaatactttGATATTGTTCTATACTGTTAATaccattgttttaatttttgtttttccttttaagGAACAATAAAGTTTTTAACTGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71624 False 2401 lncRNA 0.42 2 27585525 27595304
TU71625 True 2506 lncRNA 0.41 2 27585525 27595409
XM_039800993.1 False 2474 mRNA 0.45 3 27586150 27595329

Neighbor

gene id symbol gene type direction distance location
trnam-cau_3 NA coding upstream 206558 27378896 ~ 27378967 (+)
trnam-cau_2 NA coding upstream 209231 27376223 ~ 27376294 (+)
sema3bl sema3g coding upstream 622632 26901475 ~ 26962893 (+)
LOC120559520 NA coding upstream 733817 26812221 ~ 26851708 (+)
actr8 actr8 coding upstream 793131 26785790 ~ 26792394 (+)
si:dkey-72l14.3 LOC100706739,LOC101069958,LOC103385031,LOC104952267 coding downstream 111087 27706496 ~ 27724463 (+)
trnar-ccu_1 NA coding downstream 167956 27763365 ~ 27763437 (+)
trnar-ccu_2 NA coding downstream 197083 27792492 ~ 27792564 (+)
soga1 NA coding downstream 604164 28199573 ~ 28304278 (+)
LOC120559025 NA coding downstream 767767 28363176 ~ 28377171 (+)
G53487 NA non-coding upstream 330335 27253603 ~ 27255190 (+)
G53455 LOC108233118,LOC101063193,LOC101159349,LOC103384990,LOC104941321,LOC103359395 non-coding upstream 377736 27138131 ~ 27207789 (+)
G53461 NA non-coding upstream 426111 27157470 ~ 27159414 (+)
G53445 NA non-coding upstream 591843 26989829 ~ 26993682 (+)
G53418 NA non-coding upstream 761904 26820661 ~ 26823621 (+)
G53586 arih2,LOC102785176 non-coding downstream 43437 27638846 ~ 27643964 (+)
G53588 NA non-coding downstream 49347 27644756 ~ 27647329 (+)
G53596 NA non-coding downstream 66239 27661648 ~ 27662098 (+)
G53623 NA non-coding downstream 74960 27670369 ~ 27670584 (+)
G53629 NA non-coding downstream 216096 27811505 ~ 27814439 (+)
LOC120559859 LOC101468803,LOC100690459 other upstream 168066 27412252 ~ 27417459 (+)
G53488 NA other upstream 329809 27255374 ~ 27255716 (+)
si:dkey-20d21.12 LOC101471973,LOC106098224,LOC107390607 other upstream 397582 27184494 ~ 27187943 (+)
G53305 NA other upstream 784779 26800096 ~ 26800746 (+)
LOC120559571 vapb,LOC100711919,LOC102796136,LOC101481364 other upstream 1048174 26483532 ~ 26537351 (+)
bsna bsn,LOC102782891,LOC106513106 other downstream 358990 27954399 ~ 28143801 (+)
casp9 LOC104954971 other downstream 724228 28319637 ~ 28322779 (+)
G53775 NA other downstream 746513 28341922 ~ 28345916 (+)
LOC120558754 NA other downstream 811862 28407271 ~ 28415747 (+)
nadka nadk other downstream 1701195 29296604 ~ 29323242 (+)

Expression


Co-expression Network