G54001 (spen,LOC102775881)


Basic Information

Item Value
gene id G54001
gene name spen,LOC102775881
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 29377948 ~ 29380326 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU72160
TCTGCATATAGACACAGGCAATAATAGCAATGTATGTACCAGCTACTTCGGTTAGTGTGGGaaatggagagagacaggggttCAAACTAGCGGGTTAGAGAGGACAGCTATAATACACAGGGCAGGACATACCAACCTTTTGAGAGAGTGGTAACTTGACCTATAATTCCAAATACAATCTAGGGAGATAGAACTTTGTGAGCAGAaaaaatgggcaaaaatgttGAGTGGAGAGGgaaaaattttaaaatgtaatcctCATCTTCAGGGCAGGGAACCACGCGTACTTTAATGAGtgttttaattaaaatgatgaAAACAAACTTGGCCTTGTATGGATCCAGGGTAGGATGTTTTGTATGCTAGAAAATGTCAATGAGTCCATATATCCATCCAaacggggggggagggggaggaatCTGTGTTGCAGTAGTGCACCATTGATTTCACAACAGCAATGATGGAAAAATTAAGTCTTGCATCTTCAATTTGTGAAGTCCTGCACATTCCATGTTGGTCACACTGTTCACAGCAGTAAAAGTAGTCAAATTCCTTTGGCAGAGGGAGGGAAATTTGCCCATGACAGAttaagaataaagaaaataatgttCTCTTAATGGTAATCCAGATTTTTGTTCGTAGTAGCGTTGTATTCATTCCCAGGGTGAAGAACATTAATAACAGTTTTGAAGCTCATGGATGTTCATGTCTGTTGTCAACCTCCTTAACAAGAGGAAGAGCCTGCATGCAGTCCAAACTGAAGCCGAGTCAATGGGAAATGCAGTGTCTGGGTGCAACTTTGTTCTCCAATTCTGCATGTGATTGTATCCAAGGTTAAATTATAGTTCCACATTCAGGAAAGGAGCAGGTAATCCACAGACATGAGGTAGGTTATCTCCAACAGCAACTTTCCAGTCTCAATTTCCAGCATTCTTCTTTGAATTGTACAATCCAAACATAGTCCATGTTGGTCCTCATTAAATCTGCTAGTATCAGtcattaaaaagtgaaaaaataatCTCCACAAAAATAAGACGggggaaagaaaaataataataataataatttgctcacttgtttttgttgtctctaCTGAGTTGGATCACCAGTAGAGGTCTCCCAGCACTCATATTGTAATGCCCTGATTTTAGATATAAtcccaaattaaaaaaattaaaaaaaattaaaaaaaagaaaaaggaccaAGAAATCAACCCATACCTTTAGCATGATAGCATATCCTTAAGGTGTTTGGTCAGTGTTAATCCAACAGAGAGGAATACATATCCTGTGTAGGTTATCCAAATGACTCCGCCCATGAGAGAAGTGAAGGTGTGCACCAAACCAAATTAGACTAATCCAAACAATAGTGTCTTATACATCTAATGTATGCTCTTGGTTGTTTTGTTACATGAGGAAAAAATGGTGACATTAATCCAACGAACAGGGCGTGTAACTCCAGATTAGAGGAATCCCAGGGATGGCCGCTGGAccactctctctttttcctccctctctctctctctctctctctctctctctctctctctctctctagcAATCTCCAATAATCCTGGGAAATTTTACGATATCCAATCTTTGCCCCGTATTTTccacaaatgatatatccaccTCACACAGATGTTTAAGATGTTTAATAATCCCAAACAGACTAAACTATTgactattcctttaagtaaTAGATACACTTGTGTACAAACATGCTCTCACTTATGGAATATCTCTGTCTACCTGCAAGTATGAATCCAGGAGTGCTGGCCACGCTCTGAGGACTGTAGAGGGGATCCCTATAAGATTTAATTCTTGAGCATGaactctttttctcctctccccCCCAAACAAGTAAATTAATAGATGGTGGGAAGATGCTTGGAGGTAAGGTGTATACCCGAAACCATGGTTCCCCCTGCCTTCAGAGAAACTTTGTCCACTTACCCGTCTAGTCTGCGTTCATAGCGTCCATCTCTGCTGTGGAGCGACGTGGGGGGCCCATACACAGTCCCCCCTGCCGCCCTTGTGAACCCTGATACATCCCGGCCACGAGTGCTTAAGGTCAGACTATCGTCAAGCCCCCTCGCAGCACTAGGAATTGTGCCTGGTTCATTGTAATCAGTGCGCAGGTCCCTGTCCCCCATCTTGTTGATAGCATTGTGAGCCTTCTGAGCACTTTTAATGTCCACAAAATCCACAAAGGCTGCAACTCCACCTTCTGAACCTCGCTTGGGCAGGACCTTGACACTCTCCACACGTCCATAT

Function

symbol description
spen Predicted to enable mRNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human SPEN (spen family transcriptional repressor).

NR:

description
PREDICTED: msx2-interacting protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72160 True 2277 lncRNA 0.42 2 29377948 29380326

Neighbor

gene id symbol gene type direction distance location
LOC120559893 LOC104921444,LOC103367276,LOC104966657,LOC106952640,LOC103151253,LOC106934176 coding downstream 40350 29323865 ~ 29337598 (-)
gabrd gabrd,LOC102778860 coding downstream 197257 29158029 ~ 29180691 (-)
LOC120559029 LOC102787320,LOC102195592,LOC100705795,LOC102314501 coding downstream 223723 29150403 ~ 29154225 (-)
dffb dffb coding downstream 859986 28510901 ~ 28517962 (-)
b3gnt7l LOC103356136,LOC104946517,LOC101486029 coding downstream 875043 28500573 ~ 28502905 (-)
LOC120559132 LOC102197101,LOC101463906,LOC102310392,LOC100702039 coding upstream 212722 29593048 ~ 29609420 (-)
ttll10 NA coding upstream 229583 29609909 ~ 29650365 (-)
mib2 mib2 coding upstream 302463 29682789 ~ 29731910 (-)
ubiad1 ubiad1 coding upstream 354615 29734941 ~ 29739193 (-)
atp13a2 NA coding upstream 403080 29783406 ~ 29804982 (-)
G54000 NA non-coding downstream 2526 29375019 ~ 29375422 (-)
LOC120558378 NA non-coding downstream 4700 29363028 ~ 29373248 (-)
G53997 NA non-coding downstream 5124 29371347 ~ 29372824 (-)
G53994 NA non-coding downstream 28738 29348358 ~ 29349210 (-)
G53972 gnb1,gnb1b,LOC107385217,LOC103044197,LOC106516123,LOC107666091 non-coding downstream 83787 29250963 ~ 29294161 (-)
G54005 spen non-coding upstream 4797 29385123 ~ 29385852 (-)
G54006 NA non-coding upstream 8225 29388551 ~ 29389563 (-)
G54038 ddost,LOC107687429 non-coding upstream 141464 29521790 ~ 29523462 (-)
LOC120559594 NA non-coding upstream 296045 29676371 ~ 29678804 (-)
G54185 atad3a,LOC103366266,LOC105898932 non-coding upstream 434024 29814350 ~ 29815450 (-)
LOC120559896 slc25a45 other downstream 22064 29350078 ~ 29355884 (-)
ajap1 ajap1 other downstream 348627 28971286 ~ 29029321 (-)
LOC120559779 LOC104918355,LOC103374204,LOC103385013 other downstream 1191421 28153182 ~ 28186527 (-)
LOC120558759 NA other downstream 1447433 27845264 ~ 27930515 (-)
xpc xpc other downstream 1717302 27644783 ~ 27660646 (-)
clcnk clcnka,LOC104952128,LOC102786725 other upstream 94177 29474503 ~ 29492975 (-)
cdk11b LOC103366252,LOC101466870,LOC100697195 other upstream 372335 29752661 ~ 29765873 (-)
tafa5l LOC102786421,LOC104919510,LOC100700110,LOC103384901,LOC106518908,LOC107086703 other upstream 590870 29971196 ~ 30072699 (-)
LOC120558955 LOC104919264,LOC102777709,LOC100695043,LOC102209489,LOC103373809,LOC103152775,LOC101470785,LOC106963186 other upstream 2912616 32292942 ~ 32323275 (-)
LOC120559593 plxnb1,LOC103373813,LOC107100289 other upstream 3210657 32590983 ~ 32666459 (-)

Expression


Co-expression Network