G54005 (spen)


Basic Information

Item Value
gene id G54005
gene name spen
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 29385123 ~ 29385852 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU72164
gcctgctctacccactgagccaacccggccacatccAGCACTTGTTTAAGCCTGGGATGCacaaaggtaaacaacagcgATGCACAAGGGTAGAAATCTTGAGGGCTTCACTCACCTGCCACTCGTACTGCTGCTGGTACTGCTGACTGAGTCTGAACTGGAGGAGCGACTGTGAGAGCCTGACCCACTGTGGGAGCGTGGAGGGCGGGTAGCCTGACTTGCCAGTCTCTGAGGAGAGGGATTTCGCGAATGTGTTGAGTGTGGAGACCGGCTACGACTATGGTGGTACGACCGCTCCCCGCGCCGACCCCTGTCCTCCCTGTAAAGGTCCCTGTGAACCACACTGGCCAAAGTAAAGGGTTCCCTGGCACGAGACTCATAGCGAGGCTCTGGCGTCTCAAAGCGACAAGGACTCCTGCTGTGGGAGCGGTAGAAGCCGACCCCGCTGGATGTAGatcctccgcttcctcctgtCGTGGGCCCTGCTGATCCACCTGTTCCCGTGTTGCCAGCAACAGCGCTAACGATAGTTCCACTGACTCCTGACGATACAGTTGTACCACTTCCAGTGGAGGTACCAGACCCGCTCCCAGCTGTGCTTAGAGTCCGCTCTCTTGCATCACGATAATAGTCTGTTTCATAGTGCCGCTGGCGTTCAAAACTGCTACCAGGACGCTCGTGATGTCCATAGGCACTGTGATCGTACGCCCGATCCCGACTTTCAGCCGTT

Function

symbol description
spen Predicted to enable mRNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human SPEN (spen family transcriptional repressor).

NR:

description
PREDICTED: msx2-interacting protein isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72164 True 730 lncRNA 0.57 1 29385123 29385852

Neighbor

gene id symbol gene type direction distance location
LOC120559893 LOC104921444,LOC103367276,LOC104966657,LOC106952640,LOC103151253,LOC106934176 coding downstream 47525 29323865 ~ 29337598 (-)
gabrd gabrd,LOC102778860 coding downstream 204432 29158029 ~ 29180691 (-)
LOC120559029 LOC102787320,LOC102195592,LOC100705795,LOC102314501 coding downstream 230898 29150403 ~ 29154225 (-)
dffb dffb coding downstream 867161 28510901 ~ 28517962 (-)
b3gnt7l LOC103356136,LOC104946517,LOC101486029 coding downstream 882218 28500573 ~ 28502905 (-)
LOC120559132 LOC102197101,LOC101463906,LOC102310392,LOC100702039 coding upstream 207196 29593048 ~ 29609420 (-)
ttll10 NA coding upstream 224057 29609909 ~ 29650365 (-)
mib2 mib2 coding upstream 296937 29682789 ~ 29731910 (-)
ubiad1 ubiad1 coding upstream 349089 29734941 ~ 29739193 (-)
atp13a2 NA coding upstream 397554 29783406 ~ 29804982 (-)
G54001 spen,LOC102775881 non-coding downstream 4797 29377948 ~ 29380326 (-)
G54000 NA non-coding downstream 9701 29375019 ~ 29375422 (-)
LOC120558378 NA non-coding downstream 11875 29363028 ~ 29373248 (-)
G53997 NA non-coding downstream 12299 29371347 ~ 29372824 (-)
G53994 NA non-coding downstream 35913 29348358 ~ 29349210 (-)
G54006 NA non-coding upstream 2699 29388551 ~ 29389563 (-)
G54038 ddost,LOC107687429 non-coding upstream 135938 29521790 ~ 29523462 (-)
LOC120559594 NA non-coding upstream 290519 29676371 ~ 29678804 (-)
G54185 atad3a,LOC103366266,LOC105898932 non-coding upstream 428498 29814350 ~ 29815450 (-)
G54189 NA non-coding upstream 436668 29822520 ~ 29822817 (-)
LOC120559896 slc25a45 other downstream 29239 29350078 ~ 29355884 (-)
ajap1 ajap1 other downstream 355802 28971286 ~ 29029321 (-)
LOC120559779 LOC104918355,LOC103374204,LOC103385013 other downstream 1198596 28153182 ~ 28186527 (-)
LOC120558759 NA other downstream 1454608 27845264 ~ 27930515 (-)
xpc xpc other downstream 1724477 27644783 ~ 27660646 (-)
clcnk clcnka,LOC104952128,LOC102786725 other upstream 88651 29474503 ~ 29492975 (-)
cdk11b LOC103366252,LOC101466870,LOC100697195 other upstream 366809 29752661 ~ 29765873 (-)
tafa5l LOC102786421,LOC104919510,LOC100700110,LOC103384901,LOC106518908,LOC107086703 other upstream 585344 29971196 ~ 30072699 (-)
LOC120558955 LOC104919264,LOC102777709,LOC100695043,LOC102209489,LOC103373809,LOC103152775,LOC101470785,LOC106963186 other upstream 2907090 32292942 ~ 32323275 (-)
LOC120559593 plxnb1,LOC103373813,LOC107100289 other upstream 3205131 32590983 ~ 32666459 (-)

Expression


Co-expression Network