G54006


Basic Information

Item Value
gene id G54006
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 29388551 ~ 29389563 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU72165
TACCAAGGTACTCCCCATCCATCTTCTTTATAGCCTTACAGACACTGGCGATATCGCAGTATTGTAGAAAGGCATACTGTGGGGCTCCATTCACCTTCTTAATGTCAATATCCTTTGCAGAATAATGAAAACAGAAATATGCTGTCAGTAAGTGCGATCATTTCAAACTGTGCAGCATGGTAACAATTGCATATATGGCCTGATTCCTAACCACTTCACAGCATTAACCTACCACTATTTCTCCAAAGCGTTGAAAGATGTTAAGCAGGTCATGGTAAGTGGTGGTCTTCTCCAGGTTTCCAATAAATAACGTCCGTGTGGCCTTTGGATGAAACTCGTCTATCCTCTCATCCAGGGGCCGAAATTCGTTCTCACTTTCTGTCTCTGAAAAACGTGCTTATTGAAACCTTGTGCGTTTTGTTGTTTTAGGTTTGTGCTGCAATATAGTCAATAATCAGAACTTACCGGGGCCATTCCAGGCTGTGACTTCGATTTGCATGCCGAAAAAAAGCTTTCCCTTTGATGCTCCAAGTGCTTTCTCTTGGTCCTCTTGCTGGCGAAAAAAGACAAGCCCGTAGCGCTCCTCTGAAGCTCCATGAATTTGTACAGATGTGACCTTTCCATGTTTCTTAAATTCATGGAACAAACCATCCTTCAGGCTCGTATCTGTAGTAAACAgatcaaatgttttattaattttgtaTACTGAAAAAGTAACAggttattattaaataataaactattggtaatcttttttttattaaaatgtgtcaATATTTGAGGGATGTACAGAAATAAAATGCACTACTATTTGTGCAAAAAAGCTTGTTGTGCTTGCAAACCGCATGAGCCCCTTTTAACTAACCTGTAGAGCGCACAGGAAGATTTTGGACCTTGATGCCAAAGCTTTTACGTGGTTCATCCTTGTCAAGGGAGGATAAAGGAAGTGCTGAGGGTGCAGgaacagcagcagactgcaCTGAACGAGCTGGGGAGTCATCACTTGAACTACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72165 True 1013 lncRNA 0.41 1 29388551 29389563

Neighbor

gene id symbol gene type direction distance location
LOC120559893 LOC104921444,LOC103367276,LOC104966657,LOC106952640,LOC103151253,LOC106934176 coding downstream 50953 29323865 ~ 29337598 (-)
gabrd gabrd,LOC102778860 coding downstream 207860 29158029 ~ 29180691 (-)
LOC120559029 LOC102787320,LOC102195592,LOC100705795,LOC102314501 coding downstream 234326 29150403 ~ 29154225 (-)
dffb dffb coding downstream 870589 28510901 ~ 28517962 (-)
b3gnt7l LOC103356136,LOC104946517,LOC101486029 coding downstream 885646 28500573 ~ 28502905 (-)
LOC120559132 LOC102197101,LOC101463906,LOC102310392,LOC100702039 coding upstream 203485 29593048 ~ 29609420 (-)
ttll10 NA coding upstream 220346 29609909 ~ 29650365 (-)
mib2 mib2 coding upstream 293226 29682789 ~ 29731910 (-)
ubiad1 ubiad1 coding upstream 345378 29734941 ~ 29739193 (-)
atp13a2 NA coding upstream 393843 29783406 ~ 29804982 (-)
G54005 spen non-coding downstream 2699 29385123 ~ 29385852 (-)
G54001 spen,LOC102775881 non-coding downstream 8225 29377948 ~ 29380326 (-)
G54000 NA non-coding downstream 13129 29375019 ~ 29375422 (-)
LOC120558378 NA non-coding downstream 15303 29363028 ~ 29373248 (-)
G53997 NA non-coding downstream 15727 29371347 ~ 29372824 (-)
G54038 ddost,LOC107687429 non-coding upstream 132227 29521790 ~ 29523462 (-)
LOC120559594 NA non-coding upstream 286808 29676371 ~ 29678804 (-)
G54185 atad3a,LOC103366266,LOC105898932 non-coding upstream 424787 29814350 ~ 29815450 (-)
G54189 NA non-coding upstream 432957 29822520 ~ 29822817 (-)
G54272 NA non-coding upstream 510997 29900560 ~ 29902720 (-)
LOC120559896 slc25a45 other downstream 32667 29350078 ~ 29355884 (-)
ajap1 ajap1 other downstream 359230 28971286 ~ 29029321 (-)
LOC120559779 LOC104918355,LOC103374204,LOC103385013 other downstream 1202024 28153182 ~ 28186527 (-)
LOC120558759 NA other downstream 1458036 27845264 ~ 27930515 (-)
xpc xpc other downstream 1727905 27644783 ~ 27660646 (-)
clcnk clcnka,LOC104952128,LOC102786725 other upstream 84940 29474503 ~ 29492975 (-)
cdk11b LOC103366252,LOC101466870,LOC100697195 other upstream 363098 29752661 ~ 29765873 (-)
tafa5l LOC102786421,LOC104919510,LOC100700110,LOC103384901,LOC106518908,LOC107086703 other upstream 581633 29971196 ~ 30072699 (-)
LOC120558955 LOC104919264,LOC102777709,LOC100695043,LOC102209489,LOC103373809,LOC103152775,LOC101470785,LOC106963186 other upstream 2903379 32292942 ~ 32323275 (-)
LOC120559593 plxnb1,LOC103373813,LOC107100289 other upstream 3201420 32590983 ~ 32666459 (-)

Expression


Co-expression Network