G54185 (atad3a,LOC103366266,LOC105898932)


Basic Information

Item Value
gene id G54185
gene name atad3a,LOC103366266,LOC105898932
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 29814350 ~ 29815450 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU72420
cggATCTGTTCCCTGATCAGGTCTGCGTTCTCCCTCTCCACCTGGGCACGGGCTTTGGCCTCCGCTTCAATTCGAAGCAGGTCATTCTTGTGTCTCAGATCCATTTCATGTTCAATGGTAGCTTTTCTCATGGCCTCTTGTTTCACAACCGATTCCTCTTGTTTGCGAAGGTTCTCCTCATTGAGGAATTGCTGTTGCCTGAGCTGATCATCATACCTCTGTCTGGCAAGTTTGTCTTGATATTGTGCCCTTGCCTGGTTTTGCTTTGTCTCCTCTGCCAGTGTTTTGCGTCTCTCCTCGCCTTGGAGGCGG

Function

symbol description
atad3a Enables identical protein binding activity. Involved in antiviral innate immune response; negative regulation of apoptotic process; and regulation of cell growth. Located in mitochondrion.

NR:

description
PREDICTED: microtubule-associated protein futsch-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72420 True 312 lncRNA 0.51 4 29814350 29815450

Neighbor

gene id symbol gene type direction distance location
LOC120559846 sdhb,LOC101478036,LOC102293590,LOC100705239,LOC102211954 coding downstream 3777 29806794 ~ 29810573 (-)
atp13a2 NA coding downstream 9368 29783406 ~ 29804982 (-)
ubiad1 ubiad1 coding downstream 75157 29734941 ~ 29739193 (-)
mib2 mib2 coding downstream 82440 29682789 ~ 29731910 (-)
ttll10 NA coding downstream 163985 29609909 ~ 29650365 (-)
tmem240a tmem240,tmem240a,LOC108275582,LOC107593924,LOC107687438,LOC106572021 coding upstream 7422 29822872 ~ 29837527 (-)
bcas2 bcas2 coding upstream 31432 29846882 ~ 29850954 (-)
brpf3b LOC100699843,LOC106518910,LOC103372699,LOC104963634 coding upstream 112738 29928188 ~ 29946233 (-)
mapk13 LOC104963623,LOC104919509,LOC106518909 coding upstream 132456 29947906 ~ 29959771 (-)
mtor mtor coding upstream 287781 30103231 ~ 30199840 (-)
LOC120559594 NA non-coding downstream 135546 29676371 ~ 29678804 (-)
G54038 ddost,LOC107687429 non-coding downstream 290888 29521790 ~ 29523462 (-)
G54006 NA non-coding downstream 424787 29388551 ~ 29389563 (-)
G54005 spen non-coding downstream 428498 29385123 ~ 29385852 (-)
G54001 spen,LOC102775881 non-coding downstream 434024 29377948 ~ 29380326 (-)
G54189 NA non-coding upstream 7070 29822520 ~ 29822817 (-)
G54272 NA non-coding upstream 85110 29900560 ~ 29902720 (-)
LOC120559738 NA non-coding upstream 680590 30496040 ~ 30500331 (-)
LOC120559660 NA non-coding upstream 803816 30619266 ~ 30619890 (-)
G54407 NA non-coding upstream 818482 30633932 ~ 30635350 (-)
cdk11b LOC103366252,LOC101466870,LOC100697195 other downstream 48477 29752661 ~ 29765873 (-)
clcnk clcnka,LOC104952128,LOC102786725 other downstream 321375 29474503 ~ 29492975 (-)
LOC120559896 slc25a45 other downstream 458466 29350078 ~ 29355884 (-)
ajap1 ajap1 other downstream 785029 28971286 ~ 29029321 (-)
LOC120559779 LOC104918355,LOC103374204,LOC103385013 other downstream 1627823 28153182 ~ 28186527 (-)
tafa5l LOC102786421,LOC104919510,LOC100700110,LOC103384901,LOC106518908,LOC107086703 other upstream 155746 29971196 ~ 30072699 (-)
LOC120558955 LOC104919264,LOC102777709,LOC100695043,LOC102209489,LOC103373809,LOC103152775,LOC101470785,LOC106963186 other upstream 2477492 32292942 ~ 32323275 (-)
LOC120559593 plxnb1,LOC103373813,LOC107100289 other upstream 2775533 32590983 ~ 32666459 (-)
G54756 LOC107088573,LOC106566972 other upstream 2951907 32767357 ~ 32773486 (-)
G54834 NA other upstream 3064743 32880193 ~ 32887290 (-)

Expression


Co-expression Network