G54272


Basic Information

Item Value
gene id G54272
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 29900560 ~ 29902720 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU72525
aaaAGGTGTTATTCATTGTTTAATATTTACAGCTCAATGACCCATATAACATTTAATAATTCTCAAAGTACAAAACCAACTTTTATTGTGCAAAAAagtgagaataaaaataaaataaaatgtaaatgtgtacaTTAAACATGGTAGTGAAAATCTGGGTTAATTGACTTTTATCACCAGTGCAAACAAAACTGGTTGAAACTAAActgtttttttgtcgttttttttaagAGCACTCGGTGTAAGCATTAATTAAAAATTGACTAAATACAATTTACACTTGgaaaatgttttacaaaacaTTTCTTCTTCAGACTCATCACTGCATGTGTGCAGCGGTTAGTGTCATCATAACTGTCAAAGTGTTGGTCAAATTAAAAAACTGGATTCATTTTAGAGAAACCGCTGCGTGGTCTGATCACCACGACCAGCAGGTTTCGGACATCTATATGAAGTCTGACATCAAACTGAGACTGTGACCTGGAATCACGAGAAGGAGTTCAGGTTGACAGGAGGAGTTTCAATCTACGTCCAACACCTAAAACCCTTAATCGTCCTTTTAAACCCAAACATTAAAATTGCAGCTGAACCCAAGTGaaaaacttaaagtgctcatattgggctttttgcttttttttcacaaactgctccaaacagctctattgtagtccagcctttacttccgtgacgaacgtgcgtcactttgtaacacgttataatgctagcctagctgctagcgtggcatgccCACATTCTCTGCAACTGGCTAGCTAGCAGtacgcatgtgcgactcccaacaaagatggtacagaagttagatgcctcactctgtagctaaaacagagagctcaacacacagggtgaaaagaggagctgatatagtgttttctgaaaattaaaccacataaacctattctggtacaacctctaaatacaattatgaacccgaaaatgagcataatatgagcactttaatctgTCACAGTCATagaaacaaaattaaatttCTATATTCACAGTACTTTTGTAGATAAAAACATATTGTAAACATTTTTAGagcataataaataaaactctaAAATACAACTAAAATGTACAATTTTCTTTCATCCTGATTTGGTTGGAGATTTGGAGGTTTAATTGGAAGCGAGTGTCCGTTCGTGTCCCACTAGTACAGTCTCAGTTTTTTGGTTTAGCTCCCGATCAATGGCGTTGTCTCACCGTGATTGACGTTCAACTCCATCTTAGCTTTGCGGTAAATTATGAACTGGATGGAGATCTGAAGCAATCCTGGGAAAGGGTCTGAGAAACACACAACTATGATGGACAGAAGATACCATTTGAccataaaatgacaaaatacttGCTGACACCCTCATTTTTGGTATTAAAAACCATTTTCTTACTGTATAACAGACACTTACTCATTTGCTGTATAGGGTTAGATTAACAACTGGGCAACATGGGCCCTGGGGCTCCAGATTTCCAGCACTCTCCAGAGTCCCAGGTTCACTGTGTGAATTTTACTAATTTTATTAATTGCAAAGGTGTTGCATATATCTaaagaaaaatgttgcatttagtCAAACAACCTGGGCCCAGGTAATATTCCAGCATAGCAGTGCTGGTTAATGAGGCTGCCATGCAGGGGCGATTTCAGAAGTTTTATAAATAGGGTGGCACAGGGGGgacattttatcagaatacagcatagaacaTCTACTTATACAGGAAATATTGCATAGGATAGAGGAAGCACCGGGGGGAAATAATCATATTTCAGGGGGAGGCCGGTGCCACTTAgtgccccccttctagccccgcccctgctgccatgtactgtatatactctGCTAGTGACTACTGTACCTAAAGACTTTCAGGAGTGTCTGCTGGTTGGCACAGTTAGCTTACAGTAGCTTATGCTAACTAATCAgctcctggctgtagcttcatatttacgaAATAGACTGACAGGAGTGATAtggatcttctcatctaactcttcaTCTAGGGTCACAGCAGCTCCTCTGGTGCTGTACCATGTGCTAGGACCGACTGATATTCAGCTTTTAATAAACTGCAGAAGACCGAGACAGCAGAGCTGGGCTACGAGCTAAAGATGTATGATAATGATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72525 True 2138 lncRNA 0.39 2 29900560 29902720

Neighbor

gene id symbol gene type direction distance location
bcas2 bcas2 coding downstream 49606 29846882 ~ 29850954 (-)
tmem240a tmem240,tmem240a,LOC108275582,LOC107593924,LOC107687438,LOC106572021 coding downstream 63033 29822872 ~ 29837527 (-)
LOC120559846 sdhb,LOC101478036,LOC102293590,LOC100705239,LOC102211954 coding downstream 89987 29806794 ~ 29810573 (-)
atp13a2 NA coding downstream 95578 29783406 ~ 29804982 (-)
ubiad1 ubiad1 coding downstream 161367 29734941 ~ 29739193 (-)
brpf3b LOC100699843,LOC106518910,LOC103372699,LOC104963634 coding upstream 25468 29928188 ~ 29946233 (-)
mapk13 LOC104963623,LOC104919509,LOC106518909 coding upstream 45186 29947906 ~ 29959771 (-)
mtor mtor coding upstream 200511 30103231 ~ 30199840 (-)
LOC120559739 rnf223 coding upstream 638781 30541501 ~ 30547082 (-)
dennd2c NA coding upstream 660840 30563560 ~ 30585652 (-)
G54189 NA non-coding downstream 77743 29822520 ~ 29822817 (-)
G54185 atad3a,LOC103366266,LOC105898932 non-coding downstream 85110 29814350 ~ 29815450 (-)
LOC120559594 NA non-coding downstream 221756 29676371 ~ 29678804 (-)
G54038 ddost,LOC107687429 non-coding downstream 377098 29521790 ~ 29523462 (-)
G54006 NA non-coding downstream 510997 29388551 ~ 29389563 (-)
LOC120559738 NA non-coding upstream 593320 30496040 ~ 30500331 (-)
LOC120559660 NA non-coding upstream 716546 30619266 ~ 30619890 (-)
G54407 NA non-coding upstream 731212 30633932 ~ 30635350 (-)
G54414 NA non-coding upstream 752950 30655670 ~ 30706761 (-)
G54444 NA non-coding upstream 882373 30785093 ~ 30785797 (-)
cdk11b LOC103366252,LOC101466870,LOC100697195 other downstream 134687 29752661 ~ 29765873 (-)
clcnk clcnka,LOC104952128,LOC102786725 other downstream 407585 29474503 ~ 29492975 (-)
LOC120559896 slc25a45 other downstream 544676 29350078 ~ 29355884 (-)
ajap1 ajap1 other downstream 871239 28971286 ~ 29029321 (-)
LOC120559779 LOC104918355,LOC103374204,LOC103385013 other downstream 1714033 28153182 ~ 28186527 (-)
tafa5l LOC102786421,LOC104919510,LOC100700110,LOC103384901,LOC106518908,LOC107086703 other upstream 68476 29971196 ~ 30072699 (-)
LOC120558955 LOC104919264,LOC102777709,LOC100695043,LOC102209489,LOC103373809,LOC103152775,LOC101470785,LOC106963186 other upstream 2390222 32292942 ~ 32323275 (-)
LOC120559593 plxnb1,LOC103373813,LOC107100289 other upstream 2688263 32590983 ~ 32666459 (-)
G54756 LOC107088573,LOC106566972 other upstream 2864637 32767357 ~ 32773486 (-)
G54834 NA other upstream 2977473 32880193 ~ 32887290 (-)

Expression


Co-expression Network