G54414


Basic Information

Item Value
gene id G54414
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 30655670 ~ 30706761 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU72715
TTTAATTGATGCATGTTACATTCAATACCCATGATGCTCCCACACATAATTGCATTCATAACTTTTTCTCACCATCTCAGATGTGGAATGCAACAGACAACTTGTAAATGCCTTACACTatcatatatttacatattatcCTCTGCTTCTGTACATGGCAAATCTTTAAATATGATCAAACATCAGAGGAGTAACATAGGATACAATGTATGACTGATTGTATGTAGTTTCTCTGAAGcatatttaatgtactttttTCCTTCCAAATAAAGGCATGTGCATAAAGCACCGTCATAAAAAGTGAGTCACACAGTTAGACATGATAGGTTAAAAACTCCATGACGCCTCTTCTTCATTCATATTTCACAAGATAAAACTTCCTTCAGCAgggttttctttcaaaatgCACAAAAGTACAAAAGGACATGTAAGGTAACCAAAGGGAAtagaaaataaacataaaatgtgCTCAGTGCATTAAGACTTTCCAATACAACAAAGAAACTAGAGGTGTTTGCCCTGTTCAATCTCTGTGATAAATAAATTCACATTGTTACAGGCAGACAGTGAGAGGGCTTGAATCTAAAAACCAAAGTACAGTGTGAGTAAACAGAAGTGAGAAAATAaagtgaagcaaaaaaaaaaaaaattactaaaaCGTGTGAAGGCAAAGCTGCACATTTGTCATCCAAACCGAATATATCTCACAAGTTAAAGATTTTCTTTCtgggtttaaaataaaaaaatattatagcTCAGACCAGCCAAAATGCAAGCTGTATATAATGCTGTTAGCTACATTGAGTGTTTTGGCCTTTGAATACATCACCATAGATTTGTTTGGAGGAGCAAGACATTTCAACTGTGCTATAGTTCGGTTTGGTATTGGCAGATACTTCAAacctaaaaatgtctttgtgATCATTTCATATTAGCCCTGCAAACATCAAATGCAAACTCTGGGAGCTCTCCAACTACCCTCATCAGTAAACTTAAACCAAGCATTAGGAGTAAACTAGTTCTAGGGTTATGTCTTGACCGGGAATATTTATCATTCTTTAAATTTTTAGGAGTCACTATTGACTCCTTGTAGTGTAAATGATTTGACTGGCTGAACAAGCATACATGTGGCCACGTACGTGTACacacgtgcgcgcacacacacacacacacacacacatgcgcgtaCGTACGCAAACAGTGCAGTGGCTGTGTTGAGATAGGATGACTTTCAGACTGGCACAGAGACAGTGCATGTGTCAAAAATGACATCCACATACAGTAATACAACACAGGAGTCCCAAAAAAATCAcctggaaaataaaaaatatataaacagcAATATCTGTGTGCTCAGTCAGCTGCTGTGATGGCCGAATGTGTGTTCGCACGAGGAAGACTTTAGTAGGTGTCTGCACTGAGATGACAATTAGTTGTAAAATTAGATCATGGGTTAATGTCGTCAATCATTTCTTTGTTCTGTTGAAGCCACTTGCCTTGAAGCAGCGgtgatgtaatttttttttttttttttaacgcttACATGTTTATCTCCTTGGCAAAAATCCAGCTCTGAATCATTAAATTCAATTATATCACAGGATTTAAAGGACAAACTTTTTACAATTTGAGAAAGGCCAACAGTGTAACTATTGTATTGCAGTTAATGACAAGCAGAAACTCTTTTGCCACAAAGCATGAACCTAAATGAGGAGACACAGTCACTGTTGAACTATAGCCATTCAAACCTTCAATGAGTGGCTGCCACATAGAAATGCAGCATTTTCCACCTTGGCATGGTTTTTGACACTTTGCTCTCAGAGTCAAAGGCAGACAGTGTTGATATATGTATTcatataaataacaaaacagTACGGTATAAATATAaagattctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacgcaaaGTTGTAAATGGTGTAGGAGTATAGGACAAgagcatgtatgtgtgttgtcGTGTGCGCTTGGGAATCAGTGTTAGGACAGGGCGGGGGGGGGACGGGGACTGGGGGGGTTAAAGGTGAAGCTTTCCCTCCCCCACCTCATGGAACAGCGAGGTGTAAAACTCAGGCTCCAGTTGCTTGTTGCGGTAACGCTGAACAATCTCAGTTATTTTCTGCTTCCGCCTCACGTGAGGCGGGTTGTACAAGTCACTTTCCAGACGCTTCCGTCGGCACACGTTGATGACCGTTTGGCGCACAAGAAACCCTGGGAGGGGGAAATAAACACAGGCCAGAGTAGTTAAATAGGAGAGTTTGGAGACAGTGTACAAAGGAATTTCATGAAATGGATGAATCTTATAACAACTAATGAACTTTAAAAATGAGATAAAACTTAGTGAAGATAAAAAATGAG
>TU72718
TTTAATTGATGCATGTTACATTCAATACCCATGATGCTCCCACACATAATTGCATTCATAACTTTTTCTCACCATCTCAGATGTGGAATGCAACAGACAACTTGTAAATGCCTTACACTatcatatatttacatattatcCTCTGCTTCTGTACATGGCAAATCTTTAAATATGATCAAACATCAGAGGAGTAACATAGGATACAATGTATGACTGATTGTATGTAGTTTCTCTGAAGcatatttaatgtactttttTCCTTCCAAATAAAGGCATGTGCATAAAGCACCGTCATAAAAAGTGAGTCACACAGTTAGACATGATAGGTTAAAAACTCCATGACGCCTCTTCTTCATTCATATTTCACAAGATAAAACTTCCTTCAGCAgggttttctttcaaaatgCACAAAAGTACAAAAGGACATGTAAGGTAACCAAAGGGAAtagaaaataaacataaaatgtgCTCAGTGCATTAAGACTTTCCAATACAACAAAGAAACTAGAGGTGTTTGCCCTGTTCAATCTCTGTGATAAATAAATTCACATTGTTACAGGCAGACAGTGAGAGGGCTTGAATCTAAAAACCAAAGTACAGTGTGAGTAAACAGAAGTGAGAAAATAaagtgaagcaaaaaaaaaaaaaattactaaaaCGTGTGAAGGCAAAGCTGCACATTTGTCATCCAAACCGAATATATCTCACAAGTTAAAGATTTTCTTTCtgggtttaaaataaaaaaatattatagcTCAGACCAGCCAAAATGCAAGCTGTATATAATGCTGTTAGCTACATTGAGTGTTTTGGCCTTTGAATACATCACCATAGATTTGTTTGGAGGAGCAAGACATTTCAACTGTGCTATAGTTCGGTTTGGTATTGGCAGATACTTCAAacctaaaaatgtctttgtgATCATTTCATATTAGCCCTGCAAACATCAAATGCAAACTCTGGGAGCTCTCCAACTACCCTCATCAGTAAACTTAAACCAAGCATTAGGAGTAAACTAGTTCTAGGGTTATGTCTTGACCGGGAATATTTATCATTCTTTAAATTTTTAGGAGTCACTATTGACTCCTTGTAGTGTAAATGATTTGACTGGCTGAACAAGCATACATGTGGCCACGTACGTGTACacacgtgcgcgcacacacacacacacacacacacatgcgcgtaCGTACGCAAACAGTGCAGTGGCTGTGTTGAGATAGGATGACTTTCAGACTGGCACAGAGACAGTGCATGTGTCAAAAATGACATCCACATACAGTAATACAACACAGGAGTCCCAAAAAAATCAcctggaaaataaaaaatatataaacagcAATATCTGTGTGCTCAGTCAGCTGCTGTGATGGCCGAATGTGTGTTCGCACGAGGAAGACTTTAGTAGGTGTCTGCACTGAGATGACAATTAGTTGTAAAATTAGATCATGGGTTAATGTCGTCAATCATTTCTTTGTTCTGTTGAAGCCACTTGCCTTGAAGCAGCGgtgatgtaatttttttttttttttttaacgcttACATGTTTATCTCCTTGGCAAAAATCCAGCTCTGAATCATTAAATTCAATTATATCACAGGATTTAAAGGACAAACTTTTTACAATTTGAGAAAGGCCAACAGTGTAACTATTGTATTGCAGTTAATGACAAGCAGAAACTCTTTTGCCACAAAGCATGAACCTAAATGAGGAGACACAGTCACTGTTGAACTATAGCCATTCAAACCTTCAATGAGTGGCTGCCACATAGAAATGCAGCATTTTCCACCTTGGCATGGTTTTTGACACTTTGCTCTCAGAGTCAAAGGCAGACAGTGTTGATATATGTATTcatataaataacaaaacagTACGGTATAAATATAaagattctGTGACTGTGTAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72715 True 2414 lncRNA 0.39 2 30704286 30706761
TU72718 False 1908 lncRNA 0.37 2 30655670 30706761

Neighbor

gene id symbol gene type direction distance location
csde1 csde1,LOC102790132 coding downstream 25122 30612093 ~ 30630548 (-)
ampd1 ampd1 coding downstream 52517 30587509 ~ 30603153 (-)
dennd2c NA coding downstream 70018 30563560 ~ 30585652 (-)
LOC120559739 rnf223 coding downstream 108588 30541501 ~ 30547082 (-)
mtor mtor coding downstream 455830 30103231 ~ 30199840 (-)
zgpat zgpat,LOC102796033 coding upstream 190216 30896977 ~ 30902908 (-)
LOC120559110 vstm2l,LOC101479893,LOC102782703 coding upstream 221482 30928243 ~ 30981176 (-)
ctnnbl1 ctnnbl1 coding upstream 281313 30988074 ~ 31057576 (-)
LOC120558334 NA coding upstream 406999 31113760 ~ 31125091 (-)
e2f1 e2f1,LOC102780950 coding upstream 421467 31128228 ~ 31141874 (-)
G54407 NA non-coding downstream 20320 30633932 ~ 30635350 (-)
LOC120559660 NA non-coding downstream 35780 30619266 ~ 30619890 (-)
LOC120559738 NA non-coding downstream 155339 30496040 ~ 30500331 (-)
G54272 NA non-coding downstream 752950 29900560 ~ 29902720 (-)
G54189 NA non-coding downstream 832853 29822520 ~ 29822817 (-)
G54444 NA non-coding upstream 78332 30785093 ~ 30785797 (-)
G54470 NA non-coding upstream 182257 30889018 ~ 30889218 (-)
G54508 NA non-coding upstream 357980 31064741 ~ 31064972 (-)
G54509 NA non-coding upstream 391219 31097980 ~ 31098185 (-)
G54549 NA non-coding upstream 528486 31235247 ~ 31235474 (-)
tafa5l LOC102786421,LOC104919510,LOC100700110,LOC103384901,LOC106518908,LOC107086703 other downstream 582971 29971196 ~ 30072699 (-)
cdk11b LOC103366252,LOC101466870,LOC100697195 other downstream 889797 29752661 ~ 29765873 (-)
clcnk clcnka,LOC104952128,LOC102786725 other downstream 1162695 29474503 ~ 29492975 (-)
LOC120559896 slc25a45 other downstream 1299786 29350078 ~ 29355884 (-)
ajap1 ajap1 other downstream 1626349 28971286 ~ 29029321 (-)
LOC120558955 LOC104919264,LOC102777709,LOC100695043,LOC102209489,LOC103373809,LOC103152775,LOC101470785,LOC106963186 other upstream 1586181 32292942 ~ 32323275 (-)
LOC120559593 plxnb1,LOC103373813,LOC107100289 other upstream 1884222 32590983 ~ 32666459 (-)
G54756 LOC107088573,LOC106566972 other upstream 2060596 32767357 ~ 32773486 (-)
G54834 NA other upstream 2173432 32880193 ~ 32887290 (-)
zgc:158296 NA other upstream 2259874 32966635 ~ 32971163 (-)

Expression


Co-expression Network