G54508


Basic Information

Item Value
gene id G54508
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 31064741 ~ 31064972 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU72834
gcaaagatgatgtaaagtaaacaataaaacaacaagcttgagcttctcaagacacagTGGCTTTATCTGTTGTCAATACCGCCGGTAAAGTGAATGGCCGTTACCCCCCGATAAACATCGGCTTAACCCATagcacagtgtttccatttcagctcaatgtgagagtctttactgtgttttgctgtcatttatggccactctgctttctctcatctccgttgatctattccac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72834 True 232 lncRNA 0.43 1 31064741 31064972

Neighbor

gene id symbol gene type direction distance location
ctnnbl1 ctnnbl1 coding downstream 7165 30988074 ~ 31057576 (-)
LOC120559110 vstm2l,LOC101479893,LOC102782703 coding downstream 83565 30928243 ~ 30981176 (-)
zgpat zgpat,LOC102796033 coding downstream 161833 30896977 ~ 30902908 (-)
tmco4 tmco4,LOC102793724 coding downstream 405849 30650112 ~ 30658892 (-)
csde1 csde1,LOC102790132 coding downstream 434193 30612093 ~ 30630548 (-)
LOC120558334 NA coding upstream 48788 31113760 ~ 31125091 (-)
e2f1 e2f1,LOC102780950 coding upstream 63256 31128228 ~ 31141874 (-)
itchb itch,LOC100697163,LOC101474118,LOC102781723 coding upstream 97547 31162519 ~ 31191356 (-)
trnaq-uug_1 NA coding upstream 162088 31227060 ~ 31227131 (-)
LOC120559902 twist3b,LOC104929895,LOC103352822 coding upstream 400796 31465768 ~ 31469785 (-)
G54470 NA non-coding downstream 175523 30889018 ~ 30889218 (-)
G54444 NA non-coding downstream 278944 30785093 ~ 30785797 (-)
G54414 NA non-coding downstream 357980 30655670 ~ 30706761 (-)
G54407 NA non-coding downstream 429391 30633932 ~ 30635350 (-)
LOC120559660 NA non-coding downstream 444851 30619266 ~ 30619890 (-)
G54509 NA non-coding upstream 33008 31097980 ~ 31098185 (-)
G54549 NA non-coding upstream 170275 31235247 ~ 31235474 (-)
G54567 NA non-coding upstream 282309 31347281 ~ 31350577 (-)
G54599 NA non-coding upstream 426584 31491556 ~ 31527860 (-)
G54600 NA non-coding upstream 433805 31498777 ~ 31500889 (-)
tafa5l LOC102786421,LOC104919510,LOC100700110,LOC103384901,LOC106518908,LOC107086703 other downstream 992042 29971196 ~ 30072699 (-)
cdk11b LOC103366252,LOC101466870,LOC100697195 other downstream 1298868 29752661 ~ 29765873 (-)
clcnk clcnka,LOC104952128,LOC102786725 other downstream 1571766 29474503 ~ 29492975 (-)
LOC120559896 slc25a45 other downstream 1708857 29350078 ~ 29355884 (-)
ajap1 ajap1 other downstream 2035420 28971286 ~ 29029321 (-)
LOC120558955 LOC104919264,LOC102777709,LOC100695043,LOC102209489,LOC103373809,LOC103152775,LOC101470785,LOC106963186 other upstream 1227970 32292942 ~ 32323275 (-)
LOC120559593 plxnb1,LOC103373813,LOC107100289 other upstream 1526011 32590983 ~ 32666459 (-)
G54756 LOC107088573,LOC106566972 other upstream 1702385 32767357 ~ 32773486 (-)
G54834 NA other upstream 1815221 32880193 ~ 32887290 (-)
zgc:158296 NA other upstream 1901663 32966635 ~ 32971163 (-)

Expression


Co-expression Network