G54618


Basic Information

Item Value
gene id G54618
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 31941687 ~ 31944265 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU72966
gtttaatctCTCCTTGATGCGTGTCTATTTACAGGTAATAAATCTGCAAAATAGGAAAGAGCAGGATATTTACACGGGCGTGAAACAGCCAAAACCTGTCACAGCAGCTTCAAGTCTGAAACTCTTAAAAAGGTATCAGAATTCATAAAGTATTAAAACtctttaagataattttttttcctttctaccTCTCTCGTCTTTAATCTGTGtgaaggttgtttttttatgtcctATGCACCTTCTCTGAAATGTACTTTAATCAAAGTGAACTTAGCAGGTGAGGAAGCTGGAGAGAACTGGAGGGATGAGAAACTTGCTGTAACTTGAGTGTTGCGGTTTGGAGGGTGATCAAAAATGGCACACGAGGGGAAGTATTAAGGTTGTGCGTTGGTCTGTCTATATGGGTCTGAGGAGGTGTCACGTTGGAGGGTGCAGCCCATACTGAAAAATAAGTCAGTTTCCAAACACTTAGAATAGATTCAGAAATGGCTTTTAGAATATCCCAAAATGCTTGTGGGTTCCTGATTTatctaattattttttaatagaaACAGTTTTAGGAAATGCTCTCATTcacagagttagatgagaaaattgATACCACTCCCACGTCTGCTGCTAAATTTTGAGCTAGAGCTAGGATACGGTTAGCTAAGCAGAAAGACTAGATGCAGGcataacagctagcctggctttggCAAATGCgatataatgtaataatatataaggTATAAATTAGCTAGCTAAGTGGTGCTTGTAGGTGcactatttgttatttaaaaaaaaaaaagttaccttCGGACAGAGTTAAGCCAGCTGTTTTTCCCTGCTTTCAGTGTTTATGCTATGGAAAGCTAACTGTATCCTGGCTCCAGCTTCACACTTTACAGACAGATATAAGAGGTATTAATCTTCTACCTAAGTCAAttggcaagaaagcgaataagcacactttcatttttttgttttagagaGTGAGATAATACAATATCAATCTTATGTCTGTATGTTAAGAACACAGCTGGAATCAGGACGTAGTTAGCTTAGCTCAGTTTATCATAAAGCAAAGTGAAAAACTGAAGTAATGACTTTAAGTTAGGCCCACTCTTTCTACCACAACATGATTTTACATGATGTAAATAAGATACAAATTGTTCACTTAGCATATTTTGAGGCGTTGGTTGACATATGTTTTCCCTATATTGATTGAACCAGGCTAGCTCTTTCCTTTTTCATGCTAGCTTGGCTAAACGTTCTGACATGAGATTGGTATCAATCTCCTCATCTCAGTCTGGGAAAGAAAGCCAATGAGCATATTCcacaaaatatatgaatattttaTAAGTTCCAAATACATCCTAAATGATTGTTGTCAAAATGTATATCTAAATATATTGATTTTAATGAAAAATGTTGTACATCGTTTTCAGTATGGGAAAGGGGCTGACAAGGCACAGTGAACAGTTCTGTTTGGTCAATCTCTCCCTCCACCTCTTTCCTTCTCAAACTCCACCCTCGTCCTTCATCACTGTCTTTTTTTATGTGGAAGTTGAACACCACAGATGCAACGGAATGGAAAAATGAACCCTATGGTACCATAGCCTTCAAAGCATTTCCTCTGCATTGCCCAAGTCTTTTCATCTTTTACCCCAACAAGTGGTAAAGCAGAAAACAAGAAGAGAAACTAAGCACCAGAGACCAAGTGGGCCTTCTTGGTActgcagcactttttttttttcatacttcGCTAACTAAGCCTCATTACTAGTTCAACATCACTAAAGTCATCTTCACACATCTTCATCAAAAGAAAAATTAAGCCAATGAATAGCAGTCAAACATCAATACAGTGGTCCAGATCCTCAGACCGTTTAAGTCATTCTTTCAAATTGAACGGAATGTGTAAATGAGTGCCTGTACACGGAAGTAACGTCGCCTCAATTTCACTATTCATCGAGCATAAAGACAAACAGTTCAATGACGGGGTATTTAAATGACTATAGCGGAGTGCTTGAGTCATTTTGTGGAAGAACTGAAAAGAAGATGGATCAGAGATATGCTCTTGTCCCAGAGCTGTTCTCCTGATGAATAAAGCTTTGGTCAGCCGTCCTGTATGTTGTTTTACCCTGTGTAGGTCAGTGGTTCAAGTATTGTAGCACATACAGCACGTTTCATTCTGTTCAGACACATATTTGCTGTCAGATAAAAACACAGCATCTGAGAACTACACGCTAATATATAACGATCTGGATTTTCATAATAATCCAAACTATATCAAGGGTAATGTACTCCTTTCAAGAGTTTTTATTTGACAGCAGCAATGTGTTTGGTTTGGTGGCATAAGGATAGGTCCAGAAAAAAGGAGATGGCTTTAAATTTGCCATAGAATTCTGTTACTTAAGTCTaagtttggctttttttttttcttccatagaGTGACATTCCCACTATCGGCCATGTTAGAGGCCTTCAGTGCTTGGGCAACGATGGAGAGAAGATATATTGTTCACTTCTGGCAGATAGCTGGAAAAATATAGTTCAATGAATTTAGCACTCTGATCACCTAGGTAAATGCCCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72966 True 2579 lncRNA 0.38 1 31941687 31944265

Neighbor

gene id symbol gene type direction distance location
LOC120559902 twist3b,LOC104929895,LOC103352822 coding downstream 471902 31465768 ~ 31469785 (-)
trnaq-uug_1 NA coding downstream 714556 31227060 ~ 31227131 (-)
itchb itch,LOC100697163,LOC101474118,LOC102781723 coding downstream 750331 31162519 ~ 31191356 (-)
e2f1 e2f1,LOC102780950 coding downstream 799813 31128228 ~ 31141874 (-)
LOC120558334 NA coding downstream 816596 31113760 ~ 31125091 (-)
LOC120559355 klf15,LOC103367789,LOC101076255 coding upstream 437619 32381884 ~ 32392543 (-)
cpne9 cpne9,LOC100694516,LOC101469997,LOC102776939 coding upstream 468799 32413064 ~ 32511065 (-)
si:ch211-220i18.4 LOC103373814,LOC108233036,LOC102211047,LOC100693975,LOC102782987,LOC102291816 coding upstream 626043 32570308 ~ 32586963 (-)
LOC120558593 LOC106915442,LOC106565226,LOC103152765,LOC106947658 coding upstream 744622 32688887 ~ 32694442 (-)
krt8 LOC104959359,LOC106525573,LOC108233108,LOC107391340,LOC107088570,LOC100702817,LOC103152763 coding upstream 776568 32720833 ~ 32726627 (-)
G54609 NA non-coding downstream 318357 31623121 ~ 31623330 (-)
G54599 NA non-coding downstream 413827 31491556 ~ 31527860 (-)
G54600 NA non-coding downstream 440798 31498777 ~ 31500889 (-)
G54567 NA non-coding downstream 591110 31347281 ~ 31350577 (-)
G54549 NA non-coding downstream 706213 31235247 ~ 31235474 (-)
G54629 NA non-coding upstream 48084 31992349 ~ 31992551 (-)
G54631 NA non-coding upstream 54268 31998533 ~ 31999072 (-)
G54684 NA non-coding upstream 465241 32409506 ~ 32409852 (-)
G54724 NA non-coding upstream 652307 32596572 ~ 32597493 (-)
G54731 NA non-coding upstream 731000 32675265 ~ 32675465 (-)
tafa5l LOC102786421,LOC104919510,LOC100700110,LOC103384901,LOC106518908,LOC107086703 other downstream 1868988 29971196 ~ 30072699 (-)
cdk11b LOC103366252,LOC101466870,LOC100697195 other downstream 2175814 29752661 ~ 29765873 (-)
clcnk clcnka,LOC104952128,LOC102786725 other downstream 2448712 29474503 ~ 29492975 (-)
LOC120559896 slc25a45 other downstream 2585803 29350078 ~ 29355884 (-)
ajap1 ajap1 other downstream 2912366 28971286 ~ 29029321 (-)
LOC120558955 LOC104919264,LOC102777709,LOC100695043,LOC102209489,LOC103373809,LOC103152775,LOC101470785,LOC106963186 other upstream 348677 32292942 ~ 32323275 (-)
LOC120559593 plxnb1,LOC103373813,LOC107100289 other upstream 646718 32590983 ~ 32666459 (-)
G54756 LOC107088573,LOC106566972 other upstream 823092 32767357 ~ 32773486 (-)
G54834 NA other upstream 935928 32880193 ~ 32887290 (-)
zgc:158296 NA other upstream 1022370 32966635 ~ 32971163 (-)

Expression


Co-expression Network