G54724


Basic Information

Item Value
gene id G54724
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 32596572 ~ 32597493 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU73097
ACATACATTTGTACAGTTAAACTTCTGTTCTAGTTCATATTCTAATCAGTATTTTCtcaaatcccagaatgctgtgtggaccaagggggtaagcttcgcttcagaactcgaacctcctatggcgccattttgatgctacaaaacgatcacctcccattagcattccattgactgccattcattttgacgtcactttgacagcaaataactttacatctgaagcgtttaaagactctatttgtccattgtttatttctaaagaaacacaatgtatgaaaggctccattaccttgtacctcatgttatggctccgtagcagacgtttttgtaaaaataggctaacgattgtgtcacatagtagaggaattaccgtatagtacaggagaagcttgcaggcagtttcgacttacatgagctgtttaggtttaattactaatgttaactagcattttagttagcaataattagcctgtgcccatgttatctccttacatatacctacactctctgtctctgcaagatcgggaatgattgagatttctcttggcacagctaccagaagacttacaactttcagacacgttgctcacatcccatttacgtcgtctctctcagttggaggctgctcaattaacgctcagcgctcaccagaaaagtgcttctaatatccttcactggtctccgtccagagcaacgggatctgttggtccattcttatatactgtctatggtgtgggctagccagaccctctttcgcagcactgtggaggaaggtctggcaatgcgagactaaataTGACATGACTGAACTTTTTATTGGACAaactataaattccaaaaagcAACTGTTAGCTGTAGTGATGCAGCGATGTTTGTCTGTCTGACTCCCCTGAGTTTGGCTTTAAGATAAATACTGTTATGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73097 True 922 lncRNA 0.41 1 32596572 32597493

Neighbor

gene id symbol gene type direction distance location
si:ch211-220i18.4 LOC103373814,LOC108233036,LOC102211047,LOC100693975,LOC102782987,LOC102291816 coding downstream 9609 32570308 ~ 32586963 (-)
cpne9 cpne9,LOC100694516,LOC101469997,LOC102776939 coding downstream 85507 32413064 ~ 32511065 (-)
LOC120559355 klf15,LOC103367789,LOC101076255 coding downstream 204029 32381884 ~ 32392543 (-)
LOC120559902 twist3b,LOC104929895,LOC103352822 coding downstream 1126787 31465768 ~ 31469785 (-)
trnaq-uug_1 NA coding downstream 1369441 31227060 ~ 31227131 (-)
LOC120558593 LOC106915442,LOC106565226,LOC103152765,LOC106947658 coding upstream 91394 32688887 ~ 32694442 (-)
krt8 LOC104959359,LOC106525573,LOC108233108,LOC107391340,LOC107088570,LOC100702817,LOC103152763 coding upstream 123340 32720833 ~ 32726627 (-)
tmem106c tmem106c,LOC108233084 coding upstream 294772 32892265 ~ 32903713 (-)
sars1 sars coding upstream 313265 32910758 ~ 32933014 (-)
LOC120559545 NA coding upstream 326357 32923850 ~ 32927539 (-)
G54684 NA non-coding downstream 186720 32409506 ~ 32409852 (-)
G54631 NA non-coding downstream 597500 31998533 ~ 31999072 (-)
G54629 NA non-coding downstream 604021 31992349 ~ 31992551 (-)
G54618 NA non-coding downstream 652307 31941687 ~ 31944265 (-)
G54609 NA non-coding downstream 973242 31623121 ~ 31623330 (-)
G54731 NA non-coding upstream 77772 32675265 ~ 32675465 (-)
G54733 NA non-coding upstream 84669 32682162 ~ 32682516 (-)
G54734 NA non-coding upstream 85867 32683360 ~ 32686614 (-)
G54735 NA non-coding upstream 90712 32688205 ~ 32688638 (-)
LOC120558525 NA non-coding upstream 576373 33173866 ~ 33183318 (-)
LOC120558955 LOC104919264,LOC102777709,LOC100695043,LOC102209489,LOC103373809,LOC103152775,LOC101470785,LOC106963186 other downstream 273297 32292942 ~ 32323275 (-)
tafa5l LOC102786421,LOC104919510,LOC100700110,LOC103384901,LOC106518908,LOC107086703 other downstream 2523873 29971196 ~ 30072699 (-)
cdk11b LOC103366252,LOC101466870,LOC100697195 other downstream 2830699 29752661 ~ 29765873 (-)
clcnk clcnka,LOC104952128,LOC102786725 other downstream 3103597 29474503 ~ 29492975 (-)
LOC120559896 slc25a45 other downstream 3240688 29350078 ~ 29355884 (-)
G54756 LOC107088573,LOC106566972 other upstream 169864 32767357 ~ 32773486 (-)
G54834 NA other upstream 282700 32880193 ~ 32887290 (-)
zgc:158296 NA other upstream 369142 32966635 ~ 32971163 (-)
lamb2 NA other upstream 958307 33555800 ~ 33614940 (-)
G55124 fam110a,LOC104960682 other upstream 1426525 34024018 ~ 34127495 (-)

Expression


Co-expression Network