LOC120558525


Basic Information

Item Value
gene id LOC120558525
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 33173866 ~ 33183318 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU73290
GCTCACTGAGAGTGGAGAATATCTGCATTACAAGAGGACAGAGGTTGTTCTGAAGGAGTGGAGTCTGGTGTGCGGCAGTCATGGTTCCAGCTGCATCTCATctaccacaatcaacctctgcgtCAGATCATAGTCAAGACAACCCCACTACTATTGGAACCTGACTCCTGCTACAGCTGCCATCCACCGGACCAGACAACTGCCACTGGACCTCACCCCTAGCCGACCACTGGGTTACTCTGACGGAACCACTCCTTCCCGGAATCCACCGGACCTGTTTGCCTCTCTGGAAACCTGGACTTGCTTATCCCCTTTCCGGAAACCTGGACT
>XR_005639133.1
GCTCACTGAGAGTGGAGAATATCTGCATTACAAGAGGACAGAGGTTGTTCTGAAGGAGTGGAGTCTGGTGTGCGGCAGTCATGGTTCCAGCTGCATCTCATctaccacaatcaacctctgcgtCAGATCATAGTCAAGACAACCCCACTACTATTGGAACCTGACTCCTGCTACAGCTGCCATCCACCGGACCAGACAACTGCCACTGGACCTCACCCCTAGCCGACCACTGGGTTACTCTGACGGAACCACTCCTTCCCGGAATCCACCGGACCTGTTTGCCTCTCTGGAAACCTGGACTTGCTTATCCCCTTTCCGGAAACCTGGACTtgtacttaacccttgtgttgaattcgggtcaaattgacctgttttcaatttttgttttatatcagaaattatggaacgtagaaataagcgctgaaaatgtgtaaaagaaaaattgtacattttaaaacgttggaaaaagccaaaaaaaagtgttctTGTCAAGGTTGACGGAAGACAACACAGAGTTAagtactttgaaaaaaaaaaaactgttaactCACACTCTGGCTCTGCGTTTATGTCTGCATTTGggttgatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatattttacTCTATGCTGCTATTTGAAGAGACAGGCTCCAACAGAATTTTGTTGTATTGTCAACAGGGATGGCAAGGCCACACTAATAGCCACTAAATGGCAAAAAGGTACTTTgcaacaacagtttgagtttctcagttTAACGAGGTGCACCTGGTTTCGATAGTCAAACTTGAAAGCTCATTTTGATCGAATCAAAATCGTGAAGCCCCTACTCAACCCTTTTCCTATTCCTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73290 False 330 lncRNA 0.54 3 33174419 33183318
XR_005639133.1 True 883 lncRNA 0.42 3 33173866 33183318

Neighbor

gene id symbol gene type direction distance location
pim1 pim1,LOC102786254,LOC100704168,LOC102192917 coding downstream 100788 33068885 ~ 33073078 (-)
zgc:103759 LOC104952901,LOC101466673,LOC100706292,LOC102192048 coding downstream 152522 33016489 ~ 33021344 (-)
arhgap4b LOC103371877,LOC102798993,LOC102215860 coding downstream 159017 32972595 ~ 33014849 (-)
fam50a fam50a coding downstream 208102 32950105 ~ 32965764 (-)
si:ch211-207e14.4 NA coding downstream 223884 32934467 ~ 32949982 (-)
LOC120559907 NA coding upstream 38146 33221464 ~ 33240428 (-)
LOC120559885 NA coding upstream 87814 33271132 ~ 33294480 (-)
LOC120559567 klhdc8b coding upstream 140487 33323805 ~ 33470306 (-)
si:dkey-32e6.3 NA coding upstream 325370 33508688 ~ 33524809 (-)
usp19 NA coding upstream 342537 33525855 ~ 33554185 (-)
G54735 NA non-coding downstream 485228 32688205 ~ 32688638 (-)
G54734 NA non-coding downstream 487252 32683360 ~ 32686614 (-)
G54733 NA non-coding downstream 491350 32682162 ~ 32682516 (-)
G54731 NA non-coding downstream 498401 32675265 ~ 32675465 (-)
G54724 NA non-coding downstream 576373 32596572 ~ 32597493 (-)
LOC120558313 NA non-coding upstream 124813 33308131 ~ 33308924 (-)
G54922 NA non-coding upstream 135502 33318820 ~ 33319024 (-)
G54947 NA non-coding upstream 321495 33504813 ~ 33507223 (-)
G54949 NA non-coding upstream 324116 33507434 ~ 33508423 (-)
G55034 LOC103362008,LOC101472191,LOC102782874,LOC105937849,LOC100703845 non-coding upstream 566971 33750289 ~ 33757122 (-)
zgc:158296 NA other downstream 202703 32966635 ~ 32971163 (-)
G54834 NA other downstream 286576 32880193 ~ 32887290 (-)
G54756 LOC107088573,LOC106566972 other downstream 400380 32767357 ~ 32773486 (-)
LOC120559593 plxnb1,LOC103373813,LOC107100289 other downstream 507407 32590983 ~ 32666459 (-)
LOC120558955 LOC104919264,LOC102777709,LOC100695043,LOC102209489,LOC103373809,LOC103152775,LOC101470785,LOC106963186 other downstream 850591 32292942 ~ 32323275 (-)
lamb2 NA other upstream 372482 33555800 ~ 33614940 (-)
G55124 fam110a,LOC104960682 other upstream 840700 34024018 ~ 34127495 (-)
G55131 NA other upstream 904652 34087970 ~ 34093118 (-)
ntsr1 ntsr1,LOC103361890,LOC104959625 other upstream 1053248 34236566 ~ 34291069 (-)
LOC120559165 NA other upstream 2086578 35269896 ~ 35277854 (-)

Expression


Co-expression Network