G54947


Basic Information

Item Value
gene id G54947
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 33504813 ~ 33507223 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU73391
agaactacgcactgtagctttaaaggggtgatagaatgattatatagggtatttcacactgttccttaaggtctcctaatggggtatgtaacattggttgggctgaaaatggcctggttgatattttattggcccttatgcatccctgtgttttggccctatttgtaacaagagcttttcttccaaagatggtatgctcattaatatttagatgagctgcgcgctgattggttgagcgaatcccaatacacacacacattagagacgcgacagaatctcatattccagacactgcaatgtttcattaccaaattcacttctgagacttttttatgcgagaaatcaactatataaaactcaaatatgggccattttatgaaaatgtatggctaattgcaaatttggtaagacgtgtcggactttaggagctccacacagtctgatgagaaagcggcagcctactgggctccatacccagggcaaagtcaccctttgtggattactgcactaccggggctccgtggccggctgccggcataattataatatatttacagtttgaattttgtcacaacacttatatcacagctaccccaaggtcttacaaagctaacaaaaactaacagtccgatttgaatttaaggcatttttatgaacggggtcttgttaggaggagcagctagctagctatgtgtcccattcaatacaatggggaaagatcgcggctagctagctacactttcggcataattatagtatatttacagtttgaatttcgtcacgccacttatataacatctaccccaaggtcttataaaacaatggtgtcagatttcaatttaatgattttttgtgaacactaggggttttgttagctgcgactgtccctttaatcctatgtgtacagattgcggctagttacaTAGGATCCGATTTCAATTTGATGAATTTTTGTgtatttcagaggaattctaagaggctagctagctgtcattgatagagctccatccagccgtaggctctatcaatgagactcgatgacaagaggcgtttatttcaccgatcgtttgtttaaataactcaaataacattataattacacacataagattaactggaacctgtggtaagagattgctggcgtaacaagctcgttgaccgcactctcactcacacacaccggccatttagcaggaagaggggagctgcaggccctggagctctgtccaggcagcggcgtttggtagtccattaacccaaaaaactgtgactttgcgcgggtatggaatgccgtgggctgccagccgtgacggagctcaatctagctcacagcaggccggggtctgtgaaggaaggcaggccaggcggcgaggaagcagctcttgagggaattactgtaattgttgggtctttgtaaattgtagagtgtggtctagacctactctatctgtaaagtgtctcgag
>TU73392
AataatacagtattttattattgCTTTGGCTCAGAGTTTCGATGtgcaaaacacaaaatgaaaacaccTGAATTACAAtcagtgttgtgttttaaagctttagtgtgtaactttttgatattaatgattgtccgttacattcaagccattgccagatgagttgctacaaagctaattaagactatcagctccacacaactctctgtatttctcagtaggactgtgttcagaagattgtggtgtctggtgactttcccgcgcagaaagtGAAGAGAATTAccttttctgaagagtccatcatttttttaatcctccgtgtcctccttggctactagtaaCTGCGTGGAGGGGGCGCTTGTATCATATGGACCCGCCAAcagttgtcattacttagaattcctcatgggggcggcagaactacgcactgtagctttaaaggggtgatagaatgattatatagggtatttcacactgttccttaaggtctcctaatggggtatgtaacattggttgggctgaaaatggcctggttgatattttattggcccttatgcatccctgtgttttggccctatttgtaacaagagcttttcttccaaagatggtatgctcattaatatttagatgagctgcgcgctgattggttgagcgaatcccaatacacacacacattagagacgcgacagaatctcatattccagacactgcaatgtttcattaccaaattcacttctgagacttttttatgcgagaaatcaactatataaaactcaaatatgggccattttatgaaaatgtatggctaattgcaaatttggtaagacgtgtcggactttaggagctccacacagtctgatgagaaagcggcagcctactgggctccatacccagggcaaagtcaccctttgtggattactgcactaccggggctccgtggccggctgccggcataattataatatatttacagtttgaattttgtcacaacacttatatcacagctaccccaaggtcttacaaagctaacaaaaactaacagtccgatttgaatttaaggcatttttatgaacggggtcttgttaggaggagcagctagctagctatgtgtcccattcaatacaatggggaaagatcgcggctagctagctacactttcggcataattatagtatatttacagtttgaatttcgtcacgccacttatataacatctaccccaaggtcttataaaacaatggtgtcagatttcaatttaatgattttttgtgaacactaggggttttgttagctgcgactgtccctttaatcctatgtgtacagattgcggctagttacaTAGGATCCGATTTCAATTTGATGAATTTTTGTgtatttcagaggaattctaagaggctagctagctgtcattgatagagctccatccagccgtaggctctatcaatgagactcgatgacaagaggcgtttatttcaccgatcgtttgtttaaataactcaaataacattataattacacacataagattaactggaacctgtggtaagagattgctggcgtaacaagctcgttgaccgcactctcactcacacacaccggccatttagcaggaagaggggagctgcaggccctggagctctgtccaggcagcggcgtttggtagtccattaacccaaaaaactgtgactttgcgcgggtatggaatgccgtgggctgccagccgtgacggagctcaatctagctcacagcaggccggggtctgtgaaggaaggcaggccaggcggcgaggaagcagctcttgagggaattactgtaattgttgggt
>TU73393
atgttttcagttatttcacacttttttgttaagtacataataataattccatatgtgttcattcatagttttgatgccttcagtgagaatctacaatgtaaatagtcatgaaaataaagaacgcgcatatatatatatatatatctatatatatatatatatatatatatatatctctctctgaGATGTATAATTAGATTGAACATAGGTTTGGGATGTGTTTTTATTACTTGACAGTGAGTGACACATTAAATACATATAAGTTGAATTTGTGGAAGTTATGGTCATTTTTGCGTTttaggatttatttattttatttaagatttcagGGAGATTTTTTATTCCTATATTTTCTTAGGTCAAAAACTAAGAGAGACAGCTGAATGCAAACAGTCTCAATAATCTAAAGAAAAATAGTCAAATGCTGCATTATGAGAACAGTGGAGTGATGATACCAGTGCTGAACCATTTAACTATAGATCGAGCACTGTTGCAACGACAAAGCTGGGACCCAGGAGCTTTGTTGGTCGTTAAAataatacagtattttattattgCTTTGGCTCAGAGTTTCGATGtgcaaaacacaaaatgaaaacaccTGAATTACAAtcagtgttgtgttttaaagctttagtgtgtaactttttgatattaatgattgtccgttacattcaagccattgccagatgagttgctacaaagctaattaagactatcagctccacacaactctctgtatttctcagtaggactgtgttcagaagattgtggtgtctggtgactttcccgcgcagaaagtGAAGAGAATTAccttttctgaagagtccatcatttttttaatcctccgtgtcctccttgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73391 False 1464 lncRNA 0.43 1 33504813 33506276
TU73392 True 1822 lncRNA 0.43 1 33504868 33506689
TU73393 False 862 lncRNA 0.33 1 33506362 33507223

Neighbor

gene id symbol gene type direction distance location
LOC120559567 klhdc8b coding downstream 34507 33323805 ~ 33470306 (-)
LOC120559885 NA coding downstream 210333 33271132 ~ 33294480 (-)
LOC120559907 NA coding downstream 264385 33221464 ~ 33240428 (-)
pim1 pim1,LOC102786254,LOC100704168,LOC102192917 coding downstream 431735 33068885 ~ 33073078 (-)
zgc:103759 LOC104952901,LOC101466673,LOC100706292,LOC102192048 coding downstream 483469 33016489 ~ 33021344 (-)
si:dkey-32e6.3 NA coding upstream 1465 33508688 ~ 33524809 (-)
usp19 NA coding upstream 18632 33525855 ~ 33554185 (-)
lamb2l LOC103362005 coding upstream 111400 33618623 ~ 33684274 (-)
si:rp71-17i16.5 LOC103384699,LOC104952370 coding upstream 189624 33696847 ~ 33710767 (-)
LOC120559034 NA coding upstream 223107 33730330 ~ 33731472 (-)
G54922 NA non-coding downstream 185789 33318820 ~ 33319024 (-)
LOC120558313 NA non-coding downstream 195889 33308131 ~ 33308924 (-)
LOC120558525 NA non-coding downstream 321495 33173866 ~ 33183318 (-)
G54735 NA non-coding downstream 816175 32688205 ~ 32688638 (-)
G54734 NA non-coding downstream 818199 32683360 ~ 32686614 (-)
G54949 NA non-coding upstream 211 33507434 ~ 33508423 (-)
G55034 LOC103362008,LOC101472191,LOC102782874,LOC105937849,LOC100703845 non-coding upstream 243066 33750289 ~ 33757122 (-)
G55050 NA non-coding upstream 323826 33831049 ~ 33831559 (-)
LOC120558540 NA non-coding upstream 350228 33857451 ~ 33875420 (-)
G55093 NA non-coding upstream 358731 33865954 ~ 33951682 (-)
zgc:158296 NA other downstream 533650 32966635 ~ 32971163 (-)
G54834 NA other downstream 617523 32880193 ~ 32887290 (-)
G54756 LOC107088573,LOC106566972 other downstream 731327 32767357 ~ 32773486 (-)
LOC120559593 plxnb1,LOC103373813,LOC107100289 other downstream 838354 32590983 ~ 32666459 (-)
LOC120558955 LOC104919264,LOC102777709,LOC100695043,LOC102209489,LOC103373809,LOC103152775,LOC101470785,LOC106963186 other downstream 1181538 32292942 ~ 32323275 (-)
lamb2 NA other upstream 48577 33555800 ~ 33614940 (-)
G55124 fam110a,LOC104960682 other upstream 516795 34024018 ~ 34127495 (-)
G55131 NA other upstream 580747 34087970 ~ 34093118 (-)
ntsr1 ntsr1,LOC103361890,LOC104959625 other upstream 729343 34236566 ~ 34291069 (-)
LOC120559165 NA other upstream 1762673 35269896 ~ 35277854 (-)

Expression


Co-expression Network