G55343


Basic Information

Item Value
gene id G55343
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 34884408 ~ 34885590 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU73923
ttcatgtagttctacttgaacatagggtcagtttcagcaaatatgacagaaagttagttttataagacttacctactgcacctttaaagcatggtggaattagcaagctaactaactagctaactaaccagccgCTAAATTAGTCAAATCTATCAACTTAATGCTATAGTGCGCGACTATTCTATATTGATGAACGTCCGttccattcaagccattgccaaatgagttgatacaaagctaatttagCTTtaagctccacaaaactctgtattgctcagtatggctatgtttacaaaaggGTGCCGTCCAGCGAATTTCGCTCAAATTTTTCTGCGAGCGAAAACAACGGCAGCATTCAGCTTTGGAGATGAAGAGGGCATcaaaattacaagataattacctcttctgaagagtccatcatgttttttaaacctCTGTGTCCTTGATTTGTCGGGATAAACGCTAATAGCCACTGCTTGGAGGCAGGTGGGGGTGGTGCTCAATCACTGAAGACTTGCCTCATCTGCATGCGCTGATATGTTATtgccattacttagaattcctcatgggggagacagaaactacgcactatagctttaatgctTCATCCACCAACTTTGTGAAGGCATATGAAAGCATAGATCATAGATGTATTATATTaacagatatatatatacacacgatAGGAAAGATGATAATCTGATGATCAGTCGCCAGATTATCAGTCAATAGCAGGACTCGTCAAAGCAACAAGtaccagccaatcacagcacagtAGGGCGGGACTAGGTGGAACACTTTAGGGGGACAAAAATAAAGCAACTCACatccaaaataaaacatccatcCCTCCTGAGTGTAATGTCATGCTTCACTGCCATTGTACAATTTCTACTGCTGCTGAATCTGCCTTTGAGTACTGTATGTAGGCTTCACCATTCCTTTATTCAACATGAGTACCATTCATTTTGGTTGTTGTGCATTTGTGATTCTCTGCTGAATGTATATGATcatgatggatttttttttcttggggggggggggattcttTTGCACTTAATATTAAGGTTGGGTGAGAATGAATagctttgttttaaaaatgagcTGTATTATTGACTGCTGTTAATAAAGTCCATTATAAAGAG

Function

GO: NA

KEGG:

id description
ko04721 Synaptic vesicle cycle

RNA

RNA id representative length rna type GC content exon number start site end site
TU73923 True 1145 lncRNA 0.39 2 34884408 34885590

Neighbor

gene id symbol gene type direction distance location
plagl2 plagl2 coding downstream 42122 34790613 ~ 34842286 (-)
slco4a1 slco4a1,LOC101478628,LOC102208188,LOC102077347,LOC102776629 coding downstream 508905 34333598 ~ 34375503 (-)
snphb snph,LOC102777778,LOC102297639 coding downstream 718444 34134259 ~ 34165964 (-)
LOC120559811 NA coding downstream 920468 33955326 ~ 33963940 (-)
taf13 taf13 coding downstream 1119804 33763783 ~ 33764604 (-)
LOC120559153 LOC102294427,LOC103371493,LOC108250036,LOC102794968,LOC101487634 coding upstream 2195 34887785 ~ 34899218 (-)
myt1b NA coding upstream 20847 34906437 ~ 35034952 (-)
tmed4 LOC104954229,LOC100701503,LOC102209141,LOC106566412,LOC102295556 coding upstream 193209 35078799 ~ 35086447 (-)
cfap126 NA coding upstream 279153 35164743 ~ 35166257 (-)
crebzf crebzf coding upstream 377374 35262964 ~ 35266073 (-)
G55328 NA non-coding downstream 5688 34830369 ~ 34878720 (-)
G55203 NA non-coding downstream 326718 34557181 ~ 34557690 (-)
G55190 NA non-coding downstream 477238 34380065 ~ 34407170 (-)
G55166 NA non-coding downstream 617375 34266795 ~ 34267033 (-)
G55137 NA non-coding downstream 755612 34128238 ~ 34128796 (-)
G55346 snrpg,prosc non-coding upstream 177204 35062794 ~ 35077065 (-)
G55360 NA non-coding upstream 183425 35069015 ~ 35085198 (-)
G55368 NA non-coding upstream 213159 35098749 ~ 35100257 (-)
G55376 NA non-coding upstream 224790 35110380 ~ 35150623 (-)
G55396 NA non-coding upstream 291208 35176798 ~ 35177057 (-)
ntsr1 ntsr1,LOC103361890,LOC104959625 other downstream 593339 34236566 ~ 34291069 (-)
G55124 fam110a,LOC104960682 other downstream 756913 34024018 ~ 34127495 (-)
G55131 NA other downstream 791290 34087970 ~ 34093118 (-)
lamb2 NA other downstream 1269468 33555800 ~ 33614940 (-)
zgc:158296 NA other downstream 1913245 32966635 ~ 32971163 (-)
LOC120559165 NA other upstream 384306 35269896 ~ 35277854 (-)
G55492 NA other upstream 519014 35404604 ~ 35409766 (-)
si:ch73-70k4.1 NA other upstream 989032 35874622 ~ 35898736 (-)
LOC120559361 NA other upstream 1671940 36557530 ~ 36559959 (-)
G56160 NA other upstream 1796309 36681899 ~ 36724209 (-)

Expression


Co-expression Network