G55346 (snrpg,prosc)


Basic Information

Item Value
gene id G55346
gene name snrpg,prosc
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 35062794 ~ 35077065 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU73927
AATAATATATGGTGGTTATACACTGTACATAAActgaatgcacacacaaacatacaaagaaAAACAGATTTATTCACAAGATTACGCAATTCAAAAAATGTCCAAACAAAACATTCCTTTCAATGGATATCGGATAATGTTACAATTTAAAGACACACAATTGCTTTTCAGCGATAACAGAATGTAAAAAAGGTGTGAATCGTTCTCTTCTCCATCTGCAGCGGTCTCCTCTCATACTCTCTCCAAGGCCTCCAACATGATGATGCTGTTTCCTCTGATGACCACCATGCCGATGGTGTTCTGTTGTCCTCCTGGGCCCATCTCCAGAGAGTCATCCAGCACCATGTTCATAAAGGGGTCGAACCCCCGCAGGATGCCCTGCACGTGTCTGCCTCCATTCAGCTTCAATGAAAGCTTCTTGTCCATGAACTTCTTCAACTCTGGTGGATGGGCTTTGCTCATTTTGCCTTAATTTTCTAAAAGCCGACACAGTTGCTCGTATGCTTGTCGTTTTCACAAAACCGCGGAAGGACAACGTGCGCTGAGGGACCGGAAGTTCACCGGAAAACGACTTCTTGCATGTCTGCACACCGCCGCCTTGAGGCCGGGAggcgaaattacgaatcccacgccaaga
>TU73928
TTGGCTTTGTCTTCCCTCAGAGCAAGATTCCAAACCAAACAGTGCTTAAACGCCTCATTAAGACAGCAACTAcaccttcatttttttttttttttttttttttaaatcactgaaaATGAAAGCACTTTTTATGGAGACAGGAAAACACACCGACTTTGacatctttgaaaaaaaaaaaaaaacactgtgacAACGCCATTAGAGCTgcagtggaagaaaaaaaaaatggactcAAAACTAAATCAAATCACCACTTTGCAtagattccccccccccctccttcatCTCCAACAATGCACCACAGCATAGCACAGACACAAGACtgttacacacaaacaaaaaaaactatcagGTTTACTCTTGGATTTGTTGATATCAAGAATAGAGATCTGACACATTTGGAAACGccataagaaaccatatcaaaCAGACAATGCTATGTCATTATAAAGGGATAAGTGATTTATTAAATCAAGTCTTTGTTTCATTCTGTACAACAAAAACCAGACATTGTACCGCGTGGGATTTCCTGATCTCGGGGACTCCGTTACACAATCGAGCGCCATTTCAGCACGGCCGCACGCTGCGTTGGAAAGGTAGAAAATATCACGTCGGCACAACAAACCCAAACAAATCCTCGCCGTctcgaaaaaaaaaactgtgtgaaATCATTTTCGTTTTTCAATAGTTGTGCATTTGTCTTGTAGCCGGTAATCTTGTAGGAGCCGGTTCCGTGGGGAGGGAAGTCAGAGCATTATAGGTTAGTAACACGCTACTTTAATAAAAGGTAGAACTACTTCTGTACTGAATGCCACTTTGTAATGCTTAAAAGAGCAAGAAGGGCACACGAAAAAGTGAAGAGGATTAGGCAATTACACTTTAAAAGTATGCAAGAATTCTGCTCCACGTGGCTCTGTGGAAATCATCTGCCTCACTGCTCTACTCAGTTAGCACGtgaagagtgtttttttttttttcttttttctttcttaaaaagGGATTTATCAGAGGAAGGGAGACGCTCTTCTTAGTGTCCAGACACGGTGAGGTGCTGCATCTTCTTGGCGGCCTCTTCGGACACCGCCTTGGTAGTTTTCTCCGGGCTGGGGGCCGGGCTGGGGTTGGGGCTGGGGGCCGGGCTGGGATTTGGAGTGTTTGCTGCACTGTTGGGATAATCTCTGTTGCCGAATATGATGCTCCCCACTCGCACGTTGGTGGAGCCCACCTCGATCGCGTGTTCAAAATCTGTGGACATACCCATGCTGAGCTCGACGGCCTCCAGAGGCAGCTTCAGAGCGTCACACACCTCCTGCCTCCGACTCAGCAGCATCTACAGCAGGGACACGTTGGTGAGATTATGAGGGAGAATAAGAGCAGATAATACATTACACCAAAAAGTAGCCTACTGATAAAAGAACTGGTAACATTatagctaaccctaaccctgtttatataagggtgtGTTTATAGa
>TU73929
TTGGCTTTGTCTTCCCTCAGAGCAAGATTCCAAACCAAACAGTGCTTAAACGCCTCATTAAGACAGCAACTAcaccttcatttttttttttttttttttttttaaatcactgaaaATGAAAGCACTTTTTATGGAGACAGGAAAACACACCGACTTTGacatctttgaaaaaaaaaaaaaaacactgtgacAACGCCATTAGAGCTgcagtggaagaaaaaaaaaatggactcAAAACTAAATCAAATCACCACTTTGCAtagattccccccccccctccttcatCTCCAACAATGCACCACAGCATAGCACAGACACAAGACtgttacacacaaacaaaaaaaactatcagGTTTACTCTTGGATTTGTTGATATCAAGAATAGAGATCTGACACATTTGGAAACGccataagaaaccatatcaaaCAGACAATGCTATGTCATTATAAAGGGATAAGTGATTTATTAAATCAAGTCTTTGTTTCATTCTGTACAACAAAAACCAGACATTGTACCGCGTGGGATTTCCTGATCTCGGGGACTCCGTTACACAATCGAGCGCCATTTCAGCACGGCCGCACGCTGCGTTGGAAAGGTAGAAAATATCACGTCGGCACAACAAACCCAAACAAATCCTCGCCGTctcgaaaaaaaaaactgtgtgaaATCATTTTCGTTTTTCAATAGTTGTGCATTTGTCTTGTAGCCGGTAATCTTGTAGGAGCCGGTTCCGTGGGGAGGGAAGTCAGAGCATTATAGGTTAGTAACACGCTACTTTAATAAAAGGTAGAACTACTTCTGTACTGAATGCCACTTTGTAATGCTTAAAAGAGCAAGAAGGGCACACGAAAAAGTGAAGAGGATTAGGCAATTACACTTTAAAAGTATGCAAGAATTCTGCTCCACGTGGCTCTGTGGAAATCATCTGCCTCACTGCTCTACTCAGTTAGCACGtgaagagtgttttttttttttttttttttttttttttttttttaaataaagtgttacaGGCTGTTCCTCAGTTTAAATGTCCCCCTTGCTTTCATAGTATGTTCAGCTGACATTCCAATAGTGCTAACCCTAGACTGTGAAGTTTGAAGAAGAGCTTTGCTAAAGCAACACGCTGCCTGTTAATTCCAGCTTGTTATGGGCTGCAATATTGTGCACTAGGCACTGAAACAGAAACCTGTTCTATTTAAACCTGCACACATTCTGATGCCAAGCTAGTATACGCGCAGTTGtatgtagagctgggcgatacggagaaaatcaaatatcccgatattttttgaCCACATACCTCGATATTGTggtgatattgtagggttgacaattggtgctttcacaaaatatgcacacaatgagattttttgaaaaataatcatcagttatgttgATATAACCACTATGCGGGTGAAGGCAAATAATGGACCAGCTAGAagtctggtgtgttcagaaaattacatcactctactgtaatacagcctttaaaaccaggaaaaagacaacacttgtgtcatatcacgatatccaaaattttaagacgatatctagcctcacaTATCGATACATTTCCCAGCCCTAGTTGTATGGACATTGTacggggaatttgggacactaaactacACGTATACCTTAGAGTAGTCCTCTTCGCCTCCAAACATGTTAACAGTATTTGATTGTATATACAACCATACATATCTAATGTATACATTTAAATTTGCACTACAAGTGATGTTTTCATCTTTGTTGTTGACATAGCTACACTGTATGTTGTTGTGAACACGATTTCATACACATCTTAAACAGGTTTCACGAGCTTTTATACTACAGTTATACTCACATGAAAGCTTCTTGTCCATGAACTTCTTCAACTCTGGTGGATGGGCTTTGCTCATTTTGCCTTAATTTTCTAAAAGCCGACACAGTTGCTCGTATGCTTGTCGTTTTCACAAAACCGCGGAAGGACAACGTGCGCTGAGGGACCGGAAGTTCACCGGAAAACGACTTCTTGCATGTCTGCACACCGCCGCCTTGAGGCCGGGAggcgaaattacgaatcccacgccaaga

Function

symbol description
snrpg Predicted to contribute to RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within spliceosomal snRNP assembly. Predicted to be located in nucleus. Predicted to be part of SMN-Sm protein complex and nucleus. Predicted to be active in P granule. Is expressed in liver. Orthologous to several human genes including SNRPG (small nuclear ribonucleoprotein polypeptide G).
prosc PLP dependent protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73927 False 637 lncRNA 0.45 4 35062794 35066042
TU73928 False 1471 lncRNA 0.43 2 35074577 35077065
TU73929 True 2077 lncRNA 0.39 3 35062794 35077065

Neighbor

gene id symbol gene type direction distance location
myt1b NA coding downstream 27842 34906437 ~ 35034952 (-)
LOC120559153 LOC102294427,LOC103371493,LOC108250036,LOC102794968,LOC101487634 coding downstream 163576 34887785 ~ 34899218 (-)
plagl2 plagl2 coding downstream 220508 34790613 ~ 34842286 (-)
slco4a1 slco4a1,LOC101478628,LOC102208188,LOC102077347,LOC102776629 coding downstream 687291 34333598 ~ 34375503 (-)
snphb snph,LOC102777778,LOC102297639 coding downstream 896830 34134259 ~ 34165964 (-)
tmed4 LOC104954229,LOC100701503,LOC102209141,LOC106566412,LOC102295556 coding upstream 1734 35078799 ~ 35086447 (-)
cfap126 NA coding upstream 87678 35164743 ~ 35166257 (-)
crebzf crebzf coding upstream 185899 35262964 ~ 35266073 (-)
las1l las1l,LOC103461358 coding upstream 189636 35266701 ~ 35269429 (-)
mrpl49 NA coding upstream 209295 35286360 ~ 35287210 (-)
G55343 NA non-coding downstream 177204 34884408 ~ 34885590 (-)
G55328 NA non-coding downstream 184074 34830369 ~ 34878720 (-)
G55203 NA non-coding downstream 505104 34557181 ~ 34557690 (-)
G55190 NA non-coding downstream 655624 34380065 ~ 34407170 (-)
G55166 NA non-coding downstream 795761 34266795 ~ 34267033 (-)
G55368 NA non-coding upstream 21684 35098749 ~ 35100257 (-)
G55376 NA non-coding upstream 33315 35110380 ~ 35150623 (-)
G55396 NA non-coding upstream 99733 35176798 ~ 35177057 (-)
G55400 atp2b3,LOC103376147 non-coding upstream 137023 35214088 ~ 35216619 (-)
G55409 NA non-coding upstream 168592 35245657 ~ 35246547 (-)
ntsr1 ntsr1,LOC103361890,LOC104959625 other downstream 771725 34236566 ~ 34291069 (-)
G55124 fam110a,LOC104960682 other downstream 935299 34024018 ~ 34127495 (-)
G55131 NA other downstream 969676 34087970 ~ 34093118 (-)
lamb2 NA other downstream 1447854 33555800 ~ 33614940 (-)
zgc:158296 NA other downstream 2091631 32966635 ~ 32971163 (-)
LOC120559165 NA other upstream 192831 35269896 ~ 35277854 (-)
G55492 NA other upstream 327539 35404604 ~ 35409766 (-)
si:ch73-70k4.1 NA other upstream 797557 35874622 ~ 35898736 (-)
LOC120559361 NA other upstream 1480465 36557530 ~ 36559959 (-)
G56160 NA other upstream 1604834 36681899 ~ 36724209 (-)

Expression


Co-expression Network