Gene
RNA
| Item | Value |
|---|---|
| gene id | G55400 |
| gene name | atp2b3,LOC103376147 |
| gene type | non-coding |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053116.1 |
| NCBI id | CM020913.1 |
| chromosome length | 44101041 |
| location | 35214088 ~ 35216619 (-) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| symbol | description |
|---|---|
| atp2b3 | Enables P-type calcium transporter activity involved in regulation of presynaptic cytosolic calcium ion concentration. Involved in calcium ion export across plasma membrane and regulation of cytosolic calcium ion concentration. Located in plasma membrane. Is active in GABA-ergic synapse and glutamatergic synapse. Implicated in X-linked spinocerebellar ataxia 1. |
| description |
|---|
| PREDICTED: plasma membrane calcium-transporting ATPase 3-like, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU73995 | True | 218 | lncRNA | 0.50 | 4 | 35214088 | 35216619 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| cfap126 | NA | coding | downstream | 47831 | 35164743 ~ 35166257 (-) |
| tmed4 | LOC104954229,LOC100701503,LOC102209141,LOC106566412,LOC102295556 | coding | downstream | 127641 | 35078799 ~ 35086447 (-) |
| myt1b | NA | coding | downstream | 179136 | 34906437 ~ 35034952 (-) |
| LOC120559153 | LOC102294427,LOC103371493,LOC108250036,LOC102794968,LOC101487634 | coding | downstream | 314870 | 34887785 ~ 34899218 (-) |
| plagl2 | plagl2 | coding | downstream | 371802 | 34790613 ~ 34842286 (-) |
| crebzf | crebzf | coding | upstream | 46345 | 35262964 ~ 35266073 (-) |
| las1l | las1l,LOC103461358 | coding | upstream | 50082 | 35266701 ~ 35269429 (-) |
| mrpl49 | NA | coding | upstream | 69741 | 35286360 ~ 35287210 (-) |
| emd | NA | coding | upstream | 81877 | 35298496 ~ 35304015 (-) |
| flna | LOC100702302 | coding | upstream | 94575 | 35311194 ~ 35384229 (-) |
| G55396 | NA | non-coding | downstream | 37031 | 35176798 ~ 35177057 (-) |
| G55376 | NA | non-coding | downstream | 63465 | 35110380 ~ 35150623 (-) |
| G55368 | NA | non-coding | downstream | 113831 | 35098749 ~ 35100257 (-) |
| G55360 | NA | non-coding | downstream | 128890 | 35069015 ~ 35085198 (-) |
| G55346 | snrpg,prosc | non-coding | downstream | 137023 | 35062794 ~ 35077065 (-) |
| G55409 | NA | non-coding | upstream | 29038 | 35245657 ~ 35246547 (-) |
| G55496 | NA | non-coding | upstream | 198388 | 35415007 ~ 35417799 (-) |
| LOC120559180 | NA | non-coding | upstream | 215764 | 35432383 ~ 35448470 (-) |
| G55511 | NA | non-coding | upstream | 269113 | 35485732 ~ 35634395 (-) |
| G55505 | NA | non-coding | upstream | 274484 | 35491103 ~ 35709461 (-) |
| ntsr1 | ntsr1,LOC103361890,LOC104959625 | other | downstream | 923019 | 34236566 ~ 34291069 (-) |
| G55124 | fam110a,LOC104960682 | other | downstream | 1086593 | 34024018 ~ 34127495 (-) |
| G55131 | NA | other | downstream | 1120970 | 34087970 ~ 34093118 (-) |
| lamb2 | NA | other | downstream | 1599148 | 33555800 ~ 33614940 (-) |
| zgc:158296 | NA | other | downstream | 2242925 | 32966635 ~ 32971163 (-) |
| LOC120559165 | NA | other | upstream | 53277 | 35269896 ~ 35277854 (-) |
| G55492 | NA | other | upstream | 187985 | 35404604 ~ 35409766 (-) |
| si:ch73-70k4.1 | NA | other | upstream | 658003 | 35874622 ~ 35898736 (-) |
| LOC120559361 | NA | other | upstream | 1340911 | 36557530 ~ 36559959 (-) |
| G56160 | NA | other | upstream | 1465280 | 36681899 ~ 36724209 (-) |
