G55558


Basic Information

Item Value
gene id G55558
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 35634696 ~ 35665398 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU74209
ctttcttctttttgagacgccacaccaaaaacagagctattgCAAGTCCGACAACTAAACAGGTCACAAGCCCCCCCACAACGGCGCCGATCACAGCTCCTGAACTTTGTTCTCCACATTCAGCATCTGTTGAAGCAGTTCCTGGTTTTATCAGCTGAAGATCCAATGATTGACATCTGGAATGATAGAGGGACATTTTGACAGGACCATGTGTAGGGAACCATGCTGCTGTTGGAAGAGTTCAGGTGTGTCCATGTCTGATCTGAAGCTtcacttactgtgtgtgtggctgacaCGATGTCAATAATGTCCCATCAGAAAATGTTCCATCTCTGCAGTCAGAGCACTCAGTGTCCCTTAATGCTGTTCCTGTACAAATGATCCAGTTCAGTTTACATATTGTGAAGAGAACAACGTGTTCTATGACATCTTTACATTTCATCAGATCTG

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation
ko04672 Intestinal immune network for IgA production
ko05310 Asthma
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU74209 True 450 lncRNA 0.44 2 35634696 35665398

Neighbor

gene id symbol gene type direction distance location
flna LOC100702302 coding downstream 250467 35311194 ~ 35384229 (-)
emd NA coding downstream 330681 35298496 ~ 35304015 (-)
mrpl49 NA coding downstream 347486 35286360 ~ 35287210 (-)
las1l las1l,LOC103461358 coding downstream 365267 35266701 ~ 35269429 (-)
crebzf crebzf coding downstream 368623 35262964 ~ 35266073 (-)
LOC120559648 LOC103362257,LOC106633114,LOC101486280 coding upstream 587778 36253176 ~ 36270025 (-)
plch2a plch2,LOC106935153 coding upstream 607473 36272871 ~ 36447792 (-)
igf3 LOC108228312 coding upstream 916125 36581523 ~ 36588712 (-)
si:dkeyp-110g5.4 NA coding upstream 934175 36599573 ~ 36606768 (-)
lrif1 NA coding upstream 944739 36610137 ~ 36625969 (-)
G55511 NA non-coding downstream 301 35485732 ~ 35634395 (-)
G55544 NA non-coding downstream 60551 35569574 ~ 35574145 (-)
LOC120559181 NA non-coding downstream 79128 35553727 ~ 35555568 (-)
G55507 NA non-coding downstream 85025 35530014 ~ 35549671 (-)
G55514 NA non-coding downstream 131673 35494550 ~ 35503023 (-)
G55564 NA non-coding upstream 18413 35683811 ~ 35691837 (-)
G55578 NA non-coding upstream 160080 35825478 ~ 35826247 (-)
G55590 NA non-coding upstream 295532 35960930 ~ 36016130 (-)
G55599 NA non-coding upstream 417688 36083086 ~ 36083333 (-)
G55602 NA non-coding upstream 419119 36084517 ~ 36084866 (-)
G55492 NA other downstream 224930 35404604 ~ 35409766 (-)
LOC120559165 NA other downstream 356842 35269896 ~ 35277854 (-)
ntsr1 ntsr1,LOC103361890,LOC104959625 other downstream 1343627 34236566 ~ 34291069 (-)
G55124 fam110a,LOC104960682 other downstream 1507201 34024018 ~ 34127495 (-)
si:ch73-70k4.1 NA other upstream 209224 35874622 ~ 35898736 (-)
LOC120559361 NA other upstream 892132 36557530 ~ 36559959 (-)
G56160 NA other upstream 1016501 36681899 ~ 36724209 (-)
LOC120559655 mtch1,LOC102799640 other upstream 1057840 36723238 ~ 36744132 (-)
rhoaa LOC106529366,LOC107558917,LOC102777028,LOC107687289,LOC103367639,LOC107599000,LOC103384870,LOC106572042 other upstream 1219405 36884803 ~ 36895540 (-)

Expression


Co-expression Network