G56421


Basic Information

Item Value
gene id G56421
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 37824265 ~ 37868593 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU75578
tgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtgtgtgcctgtgtgtatgtgtgtgtctgtgtgtgtgtgtgtatgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtctgtgtgtctctgtgtgtgtgtgtgtgtctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
>TU75579
tgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtgtgtgcctgtgtgtatgtgtgtgtctgtgtgtgtgtgtgtatgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtctgtgtgtctctgtgtgtgtctgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcGGTGT
>TU75580
tgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtgtgtgcctgtgtgtatgtgtgtgtctgtgtgtgtgtgtgtatgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtctgtgtgtctctgtgtgtgtctgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtctgtgtgtgtgtctatgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcttgtgtgtgtctgtgtgtgtgtgtgtgtgtgtg
>TU75581
tgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtgtgtgcctgtgtgtatgtgtgtgtctgtgtgtgtgtgtgtatgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtctgtgtgtctctgtgtgtgtctgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtctgtgtgtttctgtctgtttgtgtgtctctgtgtgtgtgtgtgtgtctctgtgtgtttgtctctgtgtgtgtgtgtttgtgtgtgtctgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG:

id description
ko00830 Retinol metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU75578 False 302 lncRNA 0.50 2 37846809 37868593
TU75579 False 393 lncRNA 0.50 3 37824265 37868593
TU75580 True 459 lncRNA 0.49 3 37854889 37868593
TU75581 False 404 lncRNA 0.49 3 37854889 37868593

Neighbor

gene id symbol gene type direction distance location
mthfr mthfr coding downstream 494862 37297505 ~ 37329403 (-)
LOC120559612 LOC103363412,LOC108249421,LOC107391357 coding downstream 570224 37220534 ~ 37254041 (-)
tbc1d25 tbc1d25 coding downstream 652061 37156368 ~ 37172204 (-)
LOC120559725 rpl22,LOC102779685,LOC106566811,LOC106572248,LOC100699599,LOC101484027,LOC102785448,LOC103376530,LOC102235575,LOC104936395 coding downstream 762570 37053787 ~ 37061695 (-)
plod1a NA coding downstream 871986 36903077 ~ 36952279 (-)
LOC120559054 NA coding upstream 205824 38074417 ~ 38077028 (-)
LOC120559055 NA coding upstream 211288 38079881 ~ 38082216 (-)
tfe3a NA coding upstream 215229 38083822 ~ 38118628 (-)
fgd1 fgd1,LOC103367265 coding upstream 264629 38133222 ~ 38188792 (-)
LOC120559803 LOC102788279,LOC102300940,LOC107099231,LOC104961425 coding upstream 324667 38193260 ~ 38206091 (-)
G56391 NA non-coding downstream 87097 37700014 ~ 37737168 (-)
G56409 NA non-coding downstream 118885 37704885 ~ 37705380 (-)
G56403 NA non-coding downstream 149308 37674117 ~ 37674957 (-)
G56401 NA non-coding downstream 162932 37654565 ~ 37661333 (-)
G56393 NA non-coding downstream 187255 37635841 ~ 37637010 (-)
G56428 NA non-coding upstream 10323 37878916 ~ 37879532 (-)
G56431 NA non-coding upstream 13712 37882305 ~ 37883013 (-)
G56432 plxnb3 non-coding upstream 17202 37885795 ~ 37887015 (-)
G56434 NA non-coding upstream 48945 37917538 ~ 37979495 (-)
G56435 NA non-coding upstream 49366 37917959 ~ 37921199 (-)
G56335 NA other downstream 450949 37372635 ~ 37373316 (-)
phc2a LOC103367632,LOC102778931,LOC100708466,LOC102197996 other downstream 823114 36984885 ~ 37001151 (-)
rhoaa LOC106529366,LOC107558917,LOC102777028,LOC107687289,LOC103367639,LOC107599000,LOC103384870,LOC106572042 other downstream 928725 36884803 ~ 36895540 (-)
LOC120559655 mtch1,LOC102799640 other downstream 1080133 36723238 ~ 36744132 (-)
G56160 NA other downstream 1100056 36681899 ~ 36724209 (-)
LOC120559227 esd other upstream 13575 37882168 ~ 37900343 (-)
G56436 NA other upstream 57601 37926194 ~ 37940548 (-)
LOC120559229 NA other upstream 131409 38000002 ~ 38046669 (-)
G56438 NA other upstream 204746 38073339 ~ 38169676 (-)
G56441 NA other upstream 271451 38140044 ~ 38167270 (-)

Expression


Co-expression Network