G56432 (plxnb3)


Basic Information

Item Value
gene id G56432
gene name plxnb3
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 37885795 ~ 37887015 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU75601
TCGACCTTCCAGGTGGAGTTGTTCCCACGGCAACCAGGACAGGCCCCTCCCTCTGCTTCCCACTGGCCTGCAGCTCACacacaaccctggtgGAGATCTGGTATCCTTCAGGTCTGGGCAGACACTGAACACCTGCCACTGTGACCCCGCCCAGTACATCCTGGTACTTCATTCCCAGATTTGACCCCGTGATGGTCACCAGGACTCCGCCCTCCAACGGACCGGAGACAGGAAgtacctg

Function

symbol description
plxnb3 Predicted to enable semaphorin receptor activity. Predicted to be involved in several processes, including generation of neurons; regulation of GTPase activity; and regulation of cell shape. Predicted to act upstream of or within semaphorin-plexin signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of semaphorin receptor complex. Predicted to be integral component of plasma membrane. Orthologous to human PLXNB3 (plexin B3).

NR:

description
PREDICTED: plexin-B3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU75601 True 241 lncRNA 0.60 2 37885795 37887015

Neighbor

gene id symbol gene type direction distance location
mthfr mthfr coding downstream 556392 37297505 ~ 37329403 (-)
LOC120559612 LOC103363412,LOC108249421,LOC107391357 coding downstream 631754 37220534 ~ 37254041 (-)
tbc1d25 tbc1d25 coding downstream 713591 37156368 ~ 37172204 (-)
LOC120559725 rpl22,LOC102779685,LOC106566811,LOC106572248,LOC100699599,LOC101484027,LOC102785448,LOC103376530,LOC102235575,LOC104936395 coding downstream 824100 37053787 ~ 37061695 (-)
plod1a NA coding downstream 933516 36903077 ~ 36952279 (-)
LOC120559054 NA coding upstream 187402 38074417 ~ 38077028 (-)
LOC120559055 NA coding upstream 192866 38079881 ~ 38082216 (-)
tfe3a NA coding upstream 196807 38083822 ~ 38118628 (-)
fgd1 fgd1,LOC103367265 coding upstream 246207 38133222 ~ 38188792 (-)
LOC120559803 LOC102788279,LOC102300940,LOC107099231,LOC104961425 coding upstream 306245 38193260 ~ 38206091 (-)
G56431 NA non-coding downstream 2782 37882305 ~ 37883013 (-)
G56428 NA non-coding downstream 6263 37878916 ~ 37879532 (-)
G56421 NA non-coding downstream 17202 37824265 ~ 37868593 (-)
G56422 NA non-coding downstream 17829 37863453 ~ 37867966 (-)
G56416 NA non-coding downstream 56242 37791554 ~ 37829553 (-)
G56434 NA non-coding upstream 30523 37917538 ~ 37979495 (-)
G56435 NA non-coding upstream 30944 37917959 ~ 37921199 (-)
G56453 NA non-coding upstream 65205 37952220 ~ 37953077 (-)
G56468 NA non-coding upstream 139731 38026746 ~ 38056778 (-)
G56469 NA non-coding upstream 143983 38030998 ~ 38054663 (-)
G56376 NA other downstream 45946 37569060 ~ 37839849 (-)
G56335 NA other downstream 512479 37372635 ~ 37373316 (-)
phc2a LOC103367632,LOC102778931,LOC100708466,LOC102197996 other downstream 884644 36984885 ~ 37001151 (-)
rhoaa LOC106529366,LOC107558917,LOC102777028,LOC107687289,LOC103367639,LOC107599000,LOC103384870,LOC106572042 other downstream 990255 36884803 ~ 36895540 (-)
LOC120559655 mtch1,LOC102799640 other downstream 1141663 36723238 ~ 36744132 (-)
G56436 NA other upstream 39179 37926194 ~ 37940548 (-)
LOC120559229 NA other upstream 112987 38000002 ~ 38046669 (-)
G56438 NA other upstream 186324 38073339 ~ 38169676 (-)
G56441 NA other upstream 253029 38140044 ~ 38167270 (-)
G56504 NA other upstream 368648 38255663 ~ 38378423 (-)

Expression


Co-expression Network