LOC120559079


Basic Information

Item Value
gene id LOC120559079
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 41716870 ~ 41731801 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU76906
CTCTGAAGATGCAGGCCTTAGCCGTGCCCCTGCAGGGCCTCATCACTACGGTCAAGGACAACGCCAACGCCATGGTTTTTAGCGTGCTTATTTTTTCCTATCAAGCTCTCGAGAATGAGTTTCCATGCTCTTGTAAACCAGAGCCTGGTTACTGCAGTTTATACATGACTGCTCCGTGTCTTGTCGTGACCGTGTTGATGCTGTCGACGGACGTGCAGTTTCAGAGAGCGTGGAGATACACATGTTCGAAGGGATCGTGTCATTTCAGTGGCGTGTTGTTCCGTCGCCTGGTCAAGGCGTTGTGCGTGGGTCTGCTCTGGGTTGTGTCGGTGCTAATCGATGCCGAGTGGTTTGTTTGCTGTTGTAATCCCAATCCCAAGACGGTGGCAGATTTACAATGCAAAGCCAAGACTGACATCACAAATCCATTTGTTGTGACCATCAATGACATGAAACTGAATTCAATGATGTATGGCCTGGCTTTGCTCTTGGGTATAAGTTTTGTTGGTGCCTTCTTGCTGTCGACCTGGACGATCTGCGCCGAGGAAAGCTGCTGTCCGACATGTTGCACGAGAAACATTCAAGTGCATGAGCTGATGTTGGAAGTTGGGGAAAATGTATcagaaattatgaaaaaaaaacaaaaagagtggTTGTCTGGTAAAGTGGACGAGTACATCGAAGAGAAACAGTGGGTCA
>TU76907
aaaTCTGATAGGTACACATACCCACCGTCCCCACTGAAATCAACTCCTATGACTTTTAAtagaaacatattttattttttatttctgaaaTTTGAACTTTCCCTCATTGTGTGAAACTCTTTGCAGGGATGGTGTCGTcgctatccatccatccatccatctatctatctttatcAGTCCAATATCTTAATAGAAGTTATTGTATGAAACACTCTGCTGGAGAAAGGAACTACTGTTACATTCAtctattttaaacattttctgtttttaacacaaaaacacaatattaaTGTTTCTCAGAGCCATAACACAGAAAACATGGAAAGGATTATGTGACAACTTCATGTGTTCTAATTTCTTTTCTGAAAATGGAAACATCTAAACTAACTGTATGAAACTCTTTGCAGGATCAAACAAATCATGAGGACATAGAGATGACCCCCCAacagcctgggtctgtctgaggtttctgcccaaAAGGaagtttctcctcgccactgttgcaccaaaggctcttgggggaattgttgggtctttgtaaattatagagtgtggtctagacctcctctatctggaaagtgtcttgagaagagtgaactaTTGTTAcaatttgatactatgaataaaattgaatttagctgaaattgaattaaatggctTGATCATATTTACTGATACAGACAATTAGAACATAATGTGTCTTATTTTATCagtaattttcatttttatcagtAATTAAGATACAATGTGTTTCATTATGGTTCTATTAACCCCCTGTTGTCCTCCCAGATCAAAACTGTAAATGAGCAATTTTTGatgctttgtttgttttgctttctttcACTACCATCAGTATACTGTACACACCACttacaccaacttattaccactagttttacaatCATTGTTTCAAATTCATGGTAAATTAACCTGATTTATATGAAGTTACATCTAATTTTTGTTTTAggaaagctgaaattatgaattattttgactaatagttcaGATCAGAGGAAGATTTTGGTCAAAGTTTAGTTTCAGGATACTGTTCTAGAAACCATTTAAAccaattttttttctgcaaatgctataaaattggaagaaaaaaacgcccataattcaatgaaagtagtaaaCTGATCCTTAATTTGACCTGCGAGTAGTGTTGTATGGAACATCCAtcttatttttgggcaatttggttgaaagaaacccaaatttctgacaaagaaacaaacaaacaaacaaatttgccccgaggataacaggagggttaagtgtgatattaattaaaaaatacacaaaaaatgtaaacttaATCATCTTGTGTGTAACTTCTCTGTGGTATAATGTTATTATGTTTAATCACCAATAGTTACTTTACTGTACTAATGATAAAGGTGTGGGACAGCAGCTCTGGTTTTAGATGCAGTGATGACCCCCCCTGCTGGTTAATGTTGAGAACAGCAGCTCCCTCCTCTATATCACTAACTCAAGTCACATCAGGTTAtacagaaatacatttattttgatttacTAAGTTTAATGTTTTTAAGGATTTCAAATGTGTTGTTCAGTCAATACAAGGCTGTGATTAATTCTGATGTTTTT
>XM_039800501.1
AATCCCTTCATTTGACAAACTTCACCTCTGAAGATGCAGGCCTTAGCCGTGCCCCTGCAGGGCCTCATCACTACGGTCAAGGACAACGCCAACGCCATGGTTTTTAGCGTGCTTATTTTTTCCTATCAAGCTCTCGAGAATGAGTTTCCATGCTCTTGTAAACCAGAGCCTGGTTACTGCAGTTTATACATGACTGCTCCGTGTCTTGTCGTGACCGTGTTGATGCTGTCGACGGACGTGCAGTTTCAGAGAGCGTGGAGATACACATGTTCGAAGGGATCGTGTCATTTCAGTGGCGTGTTGTTCCGTCGCCTGGTCAAGGCGTTGTGCGTGGGTCTGCTCTGGGTTGTGTCGGTGCTAATCGATGCCGAGTGGTTTGTTTGCTGTTGTAATCCCAATCCCAAGACGGTGGCAGATTTACAATGCAAAGCCAAGACTGACATCACAAATCCATTTGTTGTGACCATCAATGACATGAAACTGAATTCAATGATGTATGGCCTGGCTTTGCTCTTGGGTATAAGTTTTGTTGGTGCCTTCTTGCTGTCGACCTGGACGATCTGCGCCGAGGAAAGCTGCTGTCCGACATGTTGCACGAGAAACATTCAAGTGCATGAGCTGATGTTGGAAGTTGGGGAAAATGTATcagaaattatgaaaaaaaaacaaaaagagtggTTGTCTGGTAAAGTGGACGAGTACATCGAAGAGAAACAGTGGGTCAAATGTTTTGATGTTGTTGGAGACTTCATTCATCAGGGGGAGGGAGAACCTTCCACCAGGAAACCACCAGGAAACCAGGATCAAACAAATCATGAGGACATAGAGATGACCCCCCAacagcctgggtctgtctga

Function

GO: NA

KEGG:

id description
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU76906 False 699 TUCP 0.48 2 41728043 41731776
TU76907 True 1611 lncRNA 0.33 2 41716870 41718898
XM_039800501.1 False 858 mRNA 0.48 6 41718017 41731801

Neighbor

gene id symbol gene type direction distance location
LOC120558615 NA coding downstream 9524 41296080 ~ 41707346 (-)
LOC120558622 NA coding downstream 155235 41548861 ~ 41561635 (-)
LOC120558618 NA coding downstream 194581 41516985 ~ 41522289 (-)
LOC120559078 NA coding downstream 220365 41488131 ~ 41496505 (-)
LOC120558620 NA coding downstream 301972 41414038 ~ 41414898 (-)
LOC120558363 NA coding upstream 166014 41897815 ~ 41902768 (-)
LOC120558562 NA coding upstream 385943 42117744 ~ 42121471 (-)
LOC120559081 NA coding upstream 533725 42265526 ~ 42267943 (-)
LOC120558557 NA coding upstream 552835 42284636 ~ 42309616 (-)
LOC120559083 NA coding upstream 605692 42337493 ~ 42344971 (-)
G57265 NA non-coding downstream 137954 41575016 ~ 41578916 (-)
G57199 NA non-coding downstream 175315 41541337 ~ 41541555 (-)
G57169 NA non-coding downstream 335751 41380617 ~ 41381119 (-)
G57155 NA non-coding downstream 536384 41179423 ~ 41180486 (-)
G57149 NA non-coding downstream 557265 41155931 ~ 41159605 (-)
LOC120559836 NA non-coding upstream 25741 41757542 ~ 41758659 (-)
G57533 NA non-coding upstream 361644 42093445 ~ 42093777 (-)
G57544 NA non-coding upstream 438891 42170692 ~ 42175743 (-)
G57546 NA non-coding upstream 448382 42180183 ~ 42180507 (-)
G57543 NA non-coding upstream 449925 42181726 ~ 42182319 (-)
LOC120559188 arl8a,LOC100698319,LOC105027762,LOC103362481 other downstream 579144 41126335 ~ 41137726 (-)
G57146 NA other downstream 585400 41130882 ~ 41131470 (-)
G57134 NA other downstream 606203 41012073 ~ 41110667 (-)
G57041 NA other downstream 812946 40834098 ~ 40903924 (-)
G57036 NA other downstream 832264 40877882 ~ 40884606 (-)
LOC120558546 NA other upstream 172339 41904140 ~ 41918743 (-)
LOC120558559 NA other upstream 396442 42128243 ~ 42134658 (-)
LOC120559080 NA other upstream 442189 42173990 ~ 42188455 (-)
G57595 NA other upstream 804421 42536222 ~ 42651415 (-)
G57599 NA other upstream 895955 42627756 ~ 42650751 (-)

Expression


Co-expression Network