LOC120558334


Basic Information

Item Value
gene id LOC120558334
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 31113760 ~ 31125091 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799270.1
gaaagagtgagATACTTATCAGTGGCAAGGTGGAGCCTGCTTATCATTCCTTCACTTGCTTCAGTCACCTGTTGTCACACCTTGGACATCATGCAACAGACGACGTACACCATCTGGGGCACTCACGATAGCCACTGCCGACTGAAGTTAGTCGACTTTTGGGCTAATGAAAACCACATTTCCCATGAGACACAGGGGCTCAGCAAACAGCACCTGGTGGTGCGACGGGGGAAACCTTTCAAACTGACTCTGCTGTTTTTCAGCCGGTCATTGAACCCTCGCACAGAGAGGCTGGTGCTGGATGTTTCGCTAGGCCATCTGTCAGAGAGCTTCCCAGTCCAGTTCTCTGACGAGCAATCCGACCCACAAAGCTGGTCAGCCAAAGTCTACCCAGGCAACATACAGCCTCAGTCAGTCACCATCCACATCTGCTCCCCTGTTCAATCCGCAGTGGCTCTGTATAACCTTGTGGTCCACATAGAGACCATACAGAACAGAAGGAGCTATGCAGTGGGAACATTTGTGCTGCTCTGCAACCCTTGGCTAAAAGATGATCCAGTGTACATGCCACTGGATGCCCAAATAAAAGAGTATGTCAAGAGTGATTACGGGGTGGTTTTTATCGGCACCCATCTAAATGTTAGACAGCGGCCCTGGTCCTTTGGTCAGTATGAGCCTGGGGTCTTAGAGGCATGTCTGAAGCTTCTACAGgtcagcccacagcacctcaggAACAAAGACAAGGACTTCAGTCTACGGGCAGACCCTGTTTACCTCAGCAGGGTGATCTGTGCTATGGTAAACTGTAATGATGACCTGGGTATCTTGGCGGGGAAGTGGCAGGGCAGCTACAAAGATGGTATCAATCCTACAGAGTGGAGCGGCAGCGCCGACATCCTTCACCGGTGGGTCTCGTCCAACTACAGCCCCGTGCGCTATGGACAGTGCTGGGTCTTTGCATCTGTCCTCTGCACAGTGATGAGAGTGCTGGGAATTCCCTCCAGGGTGGTGACAGTTTTTAATGCAGCCCATGATGGAGATGGCAACCTAAACATTGAAGAATGTTACTCCAGCACAGGAGAAAAGCTCAACCTCAACAATAACGACAGCATTTGGAACTTCCATGTGTGGGTGGAGTGCTGGATGAGGAGACCAGACCTCGGTGCAGGGTTTGATGGCTGGCAGGTAGTGGACCCGACCCCCCAGGAGAGAAGTGCAGGGATATTCTGCTGTGGCCCCTGCCCAGTAGCTGCCATCCAGCAACATTGCCTCCGCGCCCCTTATGACACCTCGTTCGTCTATGCCTCTATTGACGCTGACGTCATACGGATGATTGTGCGCAATGGACTGGTGGTGGAGAGGAAGGTGGACACTGAGTGCGTGGGACAGCTGATCTACACAAAGAGCATTGGCTCAGACAGTCCGGAGAATCTGACGCAGACTTACAAGAGCAAGAACAGGGGACAACCAATAGCCACTCTAAGACACTCAGCGAGCAGTGGTCATCAGCGGTCATCTGAGGTCACTCGTGCAGGTTCCTTTTTTGCTTTATCATTCAATGGAAAAGACAGGTATACTGGATATGCTACTCCTCAGCCCAGACAAGTGGATTATGAAGCACGAGGAAGTTCTTCCGGTTTGGATGTATCCCTAAGGATAGATGGGGTGCCATCAGTGGGGGAGAGCATCGTCATGTGTGTGACAGTCAAAAACCAGTCAAGCAGCCCCAGGGTCCTGATGGAACACCTCAACGCTCAGCTTAAGGAGTACAACAGCAACCCACAGGAGAGCTTCTGGAGAGCACGCAATGAAGTGCACATACAGCCGGGTGAAGTTGTGTTGCTCCACCACACCATCCTCCCCTCTGAGTACGAGTCGGTCCTGGCAGCGGATGACATTGTGAACATGGCAGTGGTGATAAAGGACGTGATGACTGAAGAAAGAGCCCTGGCGATGCAGGAGTTCAACTTAAGATCCCTAAAGATAACCATAGAGATCGAAGGAGGGGACAGCATCCAGATAAAGAGGGAGCACAAAGCCCAGGTGTCCTTCATCAACAAACTTTCCAAAACTCTGAATGGAGTTGTGCTGACTGTAGAGGGATCTGGCTTGTTACAGGGCAAACAGGAAGCCAGAATGATTTCCCTGCAGCCAGACATGAAGATAGAGAAGACGGTGTTCATCATGGCAACTTCACCTGGCACTAAACTGCTGATGGCCACTTTATCACACAGCAACAGCGCCAACATGGTGTCCAGGAGCTTCCACAAAGTCTCTGTCATTACTGCATGACACTGAAGAGTCTGTCCTCCCAAGAAGCTTCAGCAACAAGAAATTAATTTCTTTCCACTGAGACATGCAGGAAGTATGCTTCAATATTGTGTtttgatatttgtttttaagaacACATCTCCGGCAAAGATgacatatttgtattttttggtAAAGTCTACAAAGGCAGTCTATATTCAGTAATCCATTTAAaagaatgtactgtatatacttgGTAAAATCCTACAATATTCCTGTATTTTA

Function

GO:

id name namespace
GO:0046930 pore complex cellular_component
GO:0098796 membrane protein complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799270.1 True 2535 mRNA 0.50 16 31113760 31125091

Neighbor

gene id symbol gene type direction distance location
ctnnbl1 ctnnbl1 coding downstream 56184 30988074 ~ 31057576 (-)
LOC120559110 vstm2l,LOC101479893,LOC102782703 coding downstream 132584 30928243 ~ 30981176 (-)
zgpat zgpat,LOC102796033 coding downstream 210852 30896977 ~ 30902908 (-)
tmco4 tmco4,LOC102793724 coding downstream 454868 30650112 ~ 30658892 (-)
csde1 csde1,LOC102790132 coding downstream 483212 30612093 ~ 30630548 (-)
e2f1 e2f1,LOC102780950 coding upstream 3137 31128228 ~ 31141874 (-)
itchb itch,LOC100697163,LOC101474118,LOC102781723 coding upstream 37428 31162519 ~ 31191356 (-)
trnaq-uug_1 NA coding upstream 101969 31227060 ~ 31227131 (-)
LOC120559902 twist3b,LOC104929895,LOC103352822 coding upstream 340677 31465768 ~ 31469785 (-)
LOC120559355 klf15,LOC103367789,LOC101076255 coding upstream 1256793 32381884 ~ 32392543 (-)
G54509 NA non-coding downstream 15575 31097980 ~ 31098185 (-)
G54508 NA non-coding downstream 48788 31064741 ~ 31064972 (-)
G54470 NA non-coding downstream 224542 30889018 ~ 30889218 (-)
G54444 NA non-coding downstream 327963 30785093 ~ 30785797 (-)
G54414 NA non-coding downstream 406999 30655670 ~ 30706761 (-)
G54549 NA non-coding upstream 110156 31235247 ~ 31235474 (-)
G54567 NA non-coding upstream 222190 31347281 ~ 31350577 (-)
G54599 NA non-coding upstream 366465 31491556 ~ 31527860 (-)
G54600 NA non-coding upstream 373686 31498777 ~ 31500889 (-)
G54609 NA non-coding upstream 498030 31623121 ~ 31623330 (-)
tafa5l LOC102786421,LOC104919510,LOC100700110,LOC103384901,LOC106518908,LOC107086703 other downstream 1041061 29971196 ~ 30072699 (-)
cdk11b LOC103366252,LOC101466870,LOC100697195 other downstream 1347887 29752661 ~ 29765873 (-)
clcnk clcnka,LOC104952128,LOC102786725 other downstream 1620785 29474503 ~ 29492975 (-)
LOC120559896 slc25a45 other downstream 1757876 29350078 ~ 29355884 (-)
ajap1 ajap1 other downstream 2084439 28971286 ~ 29029321 (-)
LOC120558955 LOC104919264,LOC102777709,LOC100695043,LOC102209489,LOC103373809,LOC103152775,LOC101470785,LOC106963186 other upstream 1167851 32292942 ~ 32323275 (-)
LOC120559593 plxnb1,LOC103373813,LOC107100289 other upstream 1465892 32590983 ~ 32666459 (-)
G54756 LOC107088573,LOC106566972 other upstream 1642266 32767357 ~ 32773486 (-)
G54834 NA other upstream 1755102 32880193 ~ 32887290 (-)
zgc:158296 NA other upstream 1841544 32966635 ~ 32971163 (-)

Expression


Co-expression Network