LOC120558413 (LOC103372574)


Basic Information

Item Value
gene id LOC120558413
gene name LOC103372574
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 26216514 ~ 26218082 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799398.1
ACACACTCATTGTCCCCACGGCTATAAACACTTCATTGAGCATGTGGCAGCCCTGCGTTCCTCAAAGCCCTTCCCAGCGCTCTCATTGGCTGGTGGACTGTGAGAAACTCCAACAAGCCCAAGACCCACACATTCATATGGAGATTTGGGTGTATAAATACAGGGCAGAGGCAGAGAAGAAGGCAGCTCAGATTCAACTGGCTCTTCGCACCGAGCAGGAACGCTCTAACTCTACAGCTATGGCGCCCACTGTTTTTGGACATGCAAGCCATCCTAAGGAACACCTGACTCCTGCTCACAAGCTGAGAAAGCCAATGGTGGAGAAACTGCGCAGAGACCGCATCAACACCAGCATCGAGCAGCTGAAATCCCTGCTGGGTCCTGAGTTCCTCAGGCAGCAACCCGACTCTAAGCAAGAGAAGGCGGACATATTGGAGATGGCCGTGTCCTATCTGAGATGCtggcagcagcagaagcagcagcatcagACCAGCGCGGCCTCTGGCCTGATGACGGGCAGCGACGGCTACTCCCGCTGCGTGCAGGAGGCCGTCAGCTTCCTGTCCCACTGTGAGGTCCAGACTCAGGCTCACCGCCGGCTGCTCAGCCACTTCCAGGGCTTGCAGGGGTCCAGCCACAGTCCCTGCACCCTCTCCCCTCCTGGCTCTCCACTCCATCAGGTCAGCTCCAGCAAGGGTCAGGCCAGCAGTGCTCTGTGGAGGCCCTGGTAGGATGGAGGCAGCATCACctccacacagagagaaagagaactaCGTCTGTGAACGTCATGGACAGAATGTTGAAGACTTactgaagtctgttttatattGTTGAGTGTTTTACTAGTATAAAAGGGCACAACGTACCAGTATTCCTTTGGAAGGACTGAAATGATTCAGGTTTTACTGGACATGTACACTTTATCATTTAAAGTGGTTACTCTGTGATTGTTAAATGTTCCTGTGGGGAAAGACaacttgtgtttgtttgttttgcaaacGTCACTGAATGATCTTGTTCTAACACCCACATTGGGTTGAAACTATTTAAGTGTCTGAGACACTGTTTGATTTCTGTGTTTAAACTACTGTCTATCTTTGGTACTGAGTATCACTGACTGATACATTTCATCAGCTTGTTGTTGAGGAACACCATCCCATAAATGGATCCCATGGAtcctcttttactgtaaatCTTATTATGATTATACTTGATTATGACTATGTGTAACCATTTTTTGGCCTATATGTGAAGGAGTGTTGTACCTGTTAACTGTTCAGTTGTAATGTTCATTATAGATGTTTTTTCATCTTCAAGTGAATACCTTTTATAAAGGCATTTTATCTTGACATCAATCTTCACTGAAAGAATCTGTTAAATTGCTTCCTTGAGAAGTTTGCCTATGAActtgaaaaataaatggaaaactTCACATGAAGTTTTGCAAACATAAA

Function

NR:

description
PREDICTED: transcription factor HES-5-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K06055 HES5; hairy and enhancer of split 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799398.1 True 1454 mRNA 0.46 2 26216514 26218082

Neighbor

gene id symbol gene type direction distance location
ubr4 NA coding upstream 4358 26149350 ~ 26212156 (+)
LOC120559097 NA coding upstream 80337 26127317 ~ 26136177 (+)
zgc:154075 LOC104945171,LOC101464044,LOC102304528,LOC100692795,LOC102780086,LOC103362596 coding upstream 107170 26102648 ~ 26109344 (+)
si:dkeyp-100a1.6 NA coding upstream 130142 26084664 ~ 26086372 (+)
arhgef16 arhgef16 coding upstream 145316 26051537 ~ 26071198 (+)
her12 LOC101486328 coding downstream 4413 26222495 ~ 26223843 (+)
rprd1b rprd1b coding downstream 18757 26236839 ~ 26247282 (+)
LOC120559565 NA coding downstream 29915 26247997 ~ 26259954 (+)
LOC120559018 NA coding downstream 48725 26266807 ~ 26274788 (+)
LOC120559111 LOC104966951,LOC104926426,LOC101067761,LOC103384493 coding downstream 148008 26366090 ~ 26374329 (+)
G53109 NA non-coding upstream 116879 26096359 ~ 26099635 (+)
LOC120559215 NA non-coding upstream 219420 25995233 ~ 25997094 (+)
G53056 NA non-coding upstream 405467 25809713 ~ 25811047 (+)
LOC120558677 NA non-coding upstream 1201116 25009989 ~ 25015398 (+)
G52892 NA non-coding upstream 1256411 24959816 ~ 24960103 (+)
G53221 NA non-coding downstream 107139 26325221 ~ 26325468 (+)
G53222 NA non-coding downstream 107837 26325919 ~ 26329616 (+)
G53223 LOC103362778,LOC108236819,LOC101165391 non-coding downstream 112002 26330084 ~ 26330628 (+)
G53239 NA non-coding downstream 146360 26364442 ~ 26364837 (+)
G53248 LOC101164642,LOC104966947,LOC100690915,LOC102195969,LOC104926428,LOC101062277 non-coding downstream 179117 26397199 ~ 26402428 (+)
G53096 ybx1 other upstream 139850 26071585 ~ 26076664 (+)
tprg1l tprg1l,LOC102784883,LOC106513028 other upstream 468193 25743589 ~ 25748321 (+)
G52871 LOC104956590 other upstream 1259184 24953442 ~ 24957330 (+)
LOC120559118 LOC102791662 other upstream 1271194 24940795 ~ 24945320 (+)
ctnnbip1 ctnnbip1 other upstream 2402108 23791447 ~ 23814406 (+)
G53232 LOC104966952,LOC103362776,LOC102800046,LOC102208894 other downstream 134378 26352460 ~ 26353463 (+)
LOC120559113 LOC108236696,LOC104966950,LOC103362773,LOC103384494 other downstream 160110 26378192 ~ 26383047 (+)
atp5f1e NA other downstream 224968 26443050 ~ 26444890 (+)
LOC120559571 vapb,LOC100711919,LOC102796136,LOC101481364 other downstream 265450 26483532 ~ 26537351 (+)
gnas gnas,LOC102796627,LOC104936173 other downstream 272360 26490442 ~ 26523888 (+)

Expression


Co-expression Network