LOC120558509


Basic Information

Item Value
gene id LOC120558509
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 22388549 ~ 22397004 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799530.1
GATTTGTCACACACATTTTGAAACATATGGAGCATTTCTTCTTTAGCTAAGTGTTGGGACATCTTACAATTAAATAGttacattattattgttatttttagttattattttgttgtattttgtcaTATTGTCATTACAGGAGTACATTTCACTTATGACGCACATATGCCCATGAGGCCATTGGCCAGAAGGAActggagttgtttttgtttgcagtaaaaaaacaaaattcagtTTAACGTTAAACTAAATGGAGCTTAAAGTGTTTACAGTGCTGTTTTTGAGTGCTTTGTATTTGAGTGATCTGACTTCACCACAGGACAGCTGTGGGCAGCGGCTCCTGGTCTCCCCCCCTGGTGCATTTCGTATAGTGGGGGGGCGGGAGGCTCCTGAGGGGGCTTGGCCCTGGCAGGTCAGCATCCAGATCCAGTCCAAGCACCACTGTGGCGGGACGATCCTCAGCAACCTCTGGGTGCTCACTGCCACACACTGCTTCCACAAATACCTAAGGATCATCAAAAGCCATTTCCATGTGGTGGCAGGACTTAATGTGTTATCTGCTCCAGGAGCTCAAACCCAGATCCGCTCCATCAGGGAAGTCAAAATGCATGAGGACTACGATGACGTCACGTCTGACAACGATGTGACACTCTTGCTCCTCAGCTCTCCCTTCAACTTCACTGACCACGTCCAACCAGTCTGCACTCCTCATAATTTGACTCATGAGTTCATCCTCAACTTCAGCCACTGTTTCATCAGTGGATGGGGGAGCTCCTATTACAGAGGCAGACTGATGAACAGATTGCAGGAAGCTGAGGTGGAGCTCATTGACAGGATTACGTGTAACCTGATCACCTGGTACAACGGCCTCATCACTGAAAACATGATCTGTGCTGGACTGGAGAGCGGGGCGGCTGATTCCTGTCAGgGTGACAGCGGGGGGCCCCTGCAGTGTTACAGCGAGGACGAGGACAGGTTTTATTTAGTCGGAGTCACGAGCTTCGGGCACGAGTGTGGACTTCCTCACAGGCCGGGGGTGTACGCCAGAACCAGCAGGTTTGCAGGTTGGCTGAAGACGAGTCAGACAGCATCAGTGTCTGCTGCACACAGACTGAACACAAGACTGATCTCAGCTCTGCTCAGTGCTGCTCTGATGCTGCTCTGAATCATCCATACAGTCTGTCAGCAATAAATATCACtgctatatatgtatatcagaCTGTTTAGATGTTTTTAGCCGTCTAAATTTGCGATGAGATGTTCCACAAACTTCACCAGTCAACGCGTTTAGACTGTTATGTCTATGAGAGCATGTTTAATGGCCTAATGGTTTCTCAATCAGCGTCTTACTCTGAGTGGTTTACAACATGAAAATTGTATTTTCTGCCAAAGttagactttttttgttatttcacaaggcatttctgtatttgcattttCAACAAGTGTACATAAGTAAGAGTTCTAATAACACAGTCAACAATATACTATAAAGTATTTATAAAAGAGAATAATATATTGAATACATTAAAAGATAAAGGCAGTAAGTAAGTTACATAATGaggaaaaaacataaaaaggctATTCAGTTTTCAATATTTTCTATAATGTAAGAACTGATAGCTTTTGTTCAACTCAATTAAGAGAAGAGGGAAGGTCGGAAACcagaatattttaaataaagaatttCTCCAATAGAATAATAGtaataagaaaagaaacatgtttGTTCTAGAAAATGTGTTCTAGAACAAACAGGACACTTGCTTTATCTATTCAAGCTTTTAATTAATCAGGAGTCCTCCTAACCCTTCAATGGACTGTTAGACCCCTCATCTTCTGGGAAAGGTTTTTAGAACATCTGGACCAAAATCTATCTAGTAACAACTTATTAACTAATTAATttacaattaattaatttacaaCAGCATATTGCATGGCATATTAGAAAGTGACAAACTCccaaattgttggaaatgtaagacgGAGGACGGCTaattacttcatgtcctatggtcctgtgataaggCCCAGGAATTTTGGACCGGGATACATGGTACCCTATGTCGGATTGCAGGGACCAGGGTTCCATTCAGTCCAAGATTATTTGTTCGGGGAGATAGGTCAATCCTAAAcgggatggataagcacataagaagctgggtccagactagtttacagatagccagacagattattttaagaggatggaagaatgaaggggtgcAGTCAATCCAgaagtgggcttgtgagatggctagggtggcagcatttgaaaaatgtcatatacAAAAAAGCGTTCATGTTGcgagttgtatgttttgtatgttgttaaaaaataaaaattgttaatcCCAAAAAAAGAGAAGTGAGATACCAATGAGCATTTATCAATGGTTCACCAACATTTATAATAGCTGTATTACCAAATATAAACAATCAATATCagacaaatgtatttttaacaaACTGGCAACTCAAGACTTGTTCTTATTAATGGCATGAACATCAAATGGCAGTTTCTTGAAACTCCATCACAACTTAATGAATGCTTGAAAACATCTCAAACACAGCAGTATGTTTTTCACAGCGGTTGGCGGTGATGTTAAGTGTAAGTGATTTGTAGCAAATAGGgtaaataaaacatgcaaacCACTAATGCATAGTGAAGAACCTGTCAGCCAGTT
>XM_039799531.1
GATTTGTCACACACATTTTGAAACATATGGAGCATTTCTTCTTTAGCTAAGTGTTGGGACATCTTACAATTAAATAGttacattattattgttatttttagttattattttgttgtattttgtcaTATTGTCATTACAGGAGTACATTTCACTTATGACGCACATATGCCCATGAGGCCATTGGCCAGAAGGAActggagttgtttttgtttgcagtaaaaaaacaaaattcagtTTAACGTTAAACTAAATGGAGCTTAAAGTGTTTACAGTGCTGTTTTTGAGTGCTTTGTATTTGAGTGATCTGACTTCACCACAGGACAGCTGTGGGCAGCGGCTCCTGGTCTCCCCCCCTGGTGCATTTCGTATAGTGGGGGGGCGGGAGGCTCCTGAGGGGGCTTGGCCCTGGCAGGTCAGCATCCAGATCCAGTCCAAGCACCACTGTGGCGGGACGATCCTCAGCAACCTCTGGGTGCTCACTGCCACACACTGCTTCCACAAATACCTGATCATCAAAAGCCATTTCCATGTGGTGGCAGGACTTAATGTGTTATCTGCTCCAGGAGCTCAAACCCAGATCCGCTCCATCAGGGAAGTCAAAATGCATGAGGACTACGATGACGTCACGTCTGACAACGATGTGACACTCTTGCTCCTCAGCTCTCCCTTCAACTTCACTGACCACGTCCAACCAGTCTGCACTCCTCATAATTTGACTCATGAGTTCATCCTCAACTTCAGCCACTGTTTCATCAGTGGATGGGGGAGCTCCTATTACAGAGGCAGACTGATGAACAGATTGCAGGAAGCTGAGGTGGAGCTCATTGACAGGATTACGTGTAACCTGATCACCTGGTACAACGGCCTCATCACTGAAAACATGATCTGTGCTGGACTGGAGAGCGGGGCGGCTGATTCCTGTCAGgGTGACAGCGGGGGGCCCCTGCAGTGTTACAGCGAGGACGAGGACAGGTTTTATTTAGTCGGAGTCACGAGCTTCGGGCACGAGTGTGGACTTCCTCACAGGCCGGGGGTGTACGCCAGAACCAGCAGGTTTGCAGGTTGGCTGAAGACGAGTCAGACAGCATCAGTGTCTGCTGCACACAGACTGAACACAAGACTGATCTCAGCTCTGCTCAGTGCTGCTCTGATGCTGCTCTGAATCATCCATACAGTCTGTCAGCAATAAATATCACtgctatatatgtatatcagaCTGTTTAGATGTTTTTAGCCGTCTAAATTTGCGATGAGATGTTCCACAAACTTCACCAGTCAACGCGTTTAGACTGTTATGTCTATGAGAGCATGTTTAATGGCCTAATGGTTTCTCAATCAGCGTCTTACTCTGAGTGGTTTACAACATGAAAATTGTATTTTCTGCCAAAGttagactttttttgttatttcacaaggcatttctgtatttgcattttCAACAAGTGTACATAAGTAAGAGTTCTAATAACACAGTCAACAATATACTATAAAGTATTTATAAAAGAGAATAATATATTGAATACATTAAAAGATAAAGGCAGTAAGTAAGTTACATAATGaggaaaaaacataaaaaggctATTCAGTTTTCAATATTTTCTATAATGTAAGAACTGATAGCTTTTGTTCAACTCAATTAAGAGAAGAGGGAAGGTCGGAAACcagaatattttaaataaagaatttCTCCAATAGAATAATAGtaataagaaaagaaacatgtttGTTCTAGAAAATGTGTTCTAGAACAAACAGGACACTTGCTTTATCTATTCAAGCTTTTAATTAATCAGGAGTCCTCCTAACCCTTCAATGGACTGTTAGACCCCTCATCTTCTGGGAAAGGTTTTTAGAACATCTGGACCAAAATCTATCTAGTAACAACTTATTAACTAATTAATttacaattaattaatttacaaCAGCATATTGCATGGCATATTAGAAAGTGACAAACTCccaaattgttggaaatgtaagacgGAGGACGGCTaattacttcatgtcctatggtcctgtgataaggCCCAGGAATTTTGGACCGGGATACATGGTACCCTATGTCGGATTGCAGGGACCAGGGTTCCATTCAGTCCAAGATTATTTGTTCGGGGAGATAGGTCAATCCTAAAcgggatggataagcacataagaagctgggtccagactagtttacagatagccagacagattattttaagaggatggaagaatgaaggggtgcAGTCAATCCAgaagtgggcttgtgagatggctagggtggcagcatttgaaaaatgtcatatacAAAAAAGCGTTCATGTTGcgagttgtatgttttgtatgttgttaaaaaataaaaattgttaatcCCAAAAAAAGAGAAGTGAGATACCAATGAGCATTTATCAATGGTTCACCAACATTTATAATAGCTGTATTACCAAATATAAACAATCAATATCagacaaatgtatttttaacaaACTGGCAACTCAAGACTTGTTCTTATTAATGGCATGAACATCAAATGGCAGTTTCTTGAAACTCCATCACAACTTAATGAATGCTTGAAAACATCTCAAACACAGCAGTATGTTTTTCACAGCGGTTGGCGGTGATGTTAAGTGTAAGTGATTTGTAGCAAATAGGgtaaataaaacatgcaaacCACTAATGCATAGTGAAGAACCTGTCAGCCAGTT

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799530.1 True 2687 mRNA 0.41 5 22388549 22397004
XM_039799531.1 False 2684 mRNA 0.41 5 22388549 22397004

Neighbor

gene id symbol gene type direction distance location
mipa LOC103368323,LOC101065051,LOC100704616 coding upstream 139819 22246955 ~ 22248730 (+)
ptges3a LOC107390842,LOC103368333,LOC104967534,LOC100704884,LOC106525288,LOC108244561,LOC101471106 coding upstream 143786 22240482 ~ 22244763 (+)
rnd1b LOC101472065,LOC103358261,LOC100705424,LOC104932892,LOC103384592 coding upstream 174685 22203091 ~ 22213864 (+)
cacnb3b LOC103363728,LOC104967530,LOC100705687,LOC101472360 coding upstream 189439 22184296 ~ 22199110 (+)
zgc:158263 LOC104932850,LOC104967525,LOC101474144,LOC102796628 coding upstream 268940 22110987 ~ 22119609 (+)
LOC120559492 def6 coding downstream 104452 22501456 ~ 22515546 (+)
ppardb ppard coding downstream 120235 22517239 ~ 22524940 (+)
mkrn4 NA coding downstream 128293 22525297 ~ 22530706 (+)
fance NA coding downstream 133902 22530906 ~ 22534605 (+)
rpl10a rpl10a,LOC103141192 coding downstream 138493 22535497 ~ 22538153 (+)
G52054 NA non-coding upstream 41903 22340383 ~ 22346646 (+)
G52064 NA non-coding upstream 133576 22254295 ~ 22254973 (+)
G52060 LOC104967533,LOC103368342 non-coding upstream 151367 22235156 ~ 22237182 (+)
LOC120558498 NA non-coding upstream 212138 22173144 ~ 22176411 (+)
G52035 NA non-coding upstream 251217 22111469 ~ 22137332 (+)
G52179 NA non-coding downstream 77226 22474230 ~ 22476314 (+)
G52185 NA non-coding downstream 83539 22480543 ~ 22484101 (+)
G52272 lhfpl5,LOC102777996 non-coding downstream 233590 22630594 ~ 22631144 (+)
G52287 NA non-coding downstream 328869 22725873 ~ 22726131 (+)
G52288 NA non-coding downstream 329593 22726597 ~ 22729555 (+)
LOC120558641 LOC103363734,LOC104967523 other upstream 293659 22090197 ~ 22094890 (+)
avpr2aa avpr2,LOC105897269 other upstream 327904 22046763 ~ 22060645 (+)
G51926 NA other upstream 484472 21903542 ~ 21904077 (+)
LOC120559721 cacna1s,LOC103368470 other upstream 580635 21783217 ~ 21807914 (+)
birc5b LOC107086758,LOC102206178,LOC102295711,LOC100709346,LOC106950807,LOC103141143,LOC106920826 other upstream 668426 21717109 ~ 21720123 (+)
G52210 LOC104964406,LOC106525460,LOC105931770 other downstream 159325 22556329 ~ 22560328 (+)
LOC120559933 NA other downstream 165150 22562154 ~ 22562521 (+)
lamtor5 lamtor5,LOC102787529 other downstream 445040 22842044 ~ 22846938 (+)
atxn7l2b kcnc4 other downstream 594248 22991252 ~ 23068479 (+)
tmem201 tmem201,LOC102777799 other downstream 1349361 23746365 ~ 23765165 (+)

Expression


Co-expression Network