her12 (LOC101486328)


Basic Information

Item Value
gene id her12
gene name LOC101486328
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 26222495 ~ 26223843 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799533.1
TGCagtccacaagaagctgctaaCTTCACCTGCACAGACATGGCTCCCTGCTCCACCAACTACTCCTCTATTCACCACACCAGGATCTCTGAGAAAGACAACATCAAATTGCGAAAACCTGCTGTGGAGAAAATGCGCAGAGATCGCATTAACAGCTGCATCGAACAACTCAAGATCATTCTGGAGAAGGAGTTCCACAAGCAGGAGCCCAACTCCAAGCTGGAGAAAGCCGACATCCTGGAGATGACTGTGAGCTTCCTGAGGCAGCAGCTGCAGCCGGGCCTCTGTCAGAGCGACTACAACCAAGGCTACTCTCACTGCTGGAGGGACTCTGTACACCTACTGTCTGCTGGATCCAACGCAGAGGCCTCTGTCACTCCTCTGCAGGTCCtccagcagcaggagcagcagctcCATCAGACCCAGAGAGACAGCAGCTCCTCCCCAGTCTGCTCCCCCCTCAGACCCACCACACTgcaggacagcagcagcagcagcagaggcccCGTGTGGAGGCCTTGGTAGAGACTCTCTAAGACCTGAGGGGACTGTCCCTCACTATGTAGGAAATATATTTCCAGCCTGCTCACTCATGATGGGTTTAATTATTGTCTCATCACATTGATGGACAAGTAGTAAAAGCAAAGGCTCTCACTTATTTGAAGGTTGTCCTGCTTTGACTTTGATTCACATTTGATGTTTGCTTTTGCGTTGTGTTTAAAGCTGGAAGTTGATTTTGAGTGATAATGGTTTTGTCAAATCTTGTGAAATGACTGTTTACTCCAGTGGAGTTTATCTTTAGGACTGCTTGAAGTAACAGTATCTGCCATACTGCGTTATACTGACAGCTGCTGTTGAGAATATTTCTCTTGTGTTTTGAATTATCTATGCCAAATTGTATGTGAGGATGAGGATCATGAGGATGATgataatggtgtgtgtgtttgtatgtttgtgcaAATGGATGTACATATTAACATTTTTGTTGATATTGTTGTTTTGCTATCCCATTTAGGCTCTTAAAATGCATTTCTAACATTTGTATGACAATTAACAATAAAAAGATACAATCATTAAAAAAGCACTGATTCCAGATTGTTTATTTTAATGAACTAAGCGTAAATATTTGTATTGTTAtttgagaattaaaaaaaacctaGTGATAGTGGTAGTGGAGGTGATGGctcagtggatatgacacatgcctttggtgtgggagatgggagggtttgat

Function

NR:

description
transcription factor HES-5

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0001756 somitogenesis biological_process
GO:0007420 brain development biological_process
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K06055 HES5; hairy and enhancer of split 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799533.1 True 1234 mRNA 0.44 2 26222495 26223843

Neighbor

gene id symbol gene type direction distance location
LOC120558413 LOC103372574 coding upstream 4413 26216514 ~ 26218082 (+)
ubr4 NA coding upstream 10339 26149350 ~ 26212156 (+)
LOC120559097 NA coding upstream 86318 26127317 ~ 26136177 (+)
zgc:154075 LOC104945171,LOC101464044,LOC102304528,LOC100692795,LOC102780086,LOC103362596 coding upstream 113151 26102648 ~ 26109344 (+)
si:dkeyp-100a1.6 NA coding upstream 136123 26084664 ~ 26086372 (+)
rprd1b rprd1b coding downstream 12996 26236839 ~ 26247282 (+)
LOC120559565 NA coding downstream 24154 26247997 ~ 26259954 (+)
LOC120559018 NA coding downstream 42964 26266807 ~ 26274788 (+)
LOC120559111 LOC104966951,LOC104926426,LOC101067761,LOC103384493 coding downstream 142247 26366090 ~ 26374329 (+)
LOC120559112 shmt2,LOC103362774,LOC102296343,LOC102798994 coding downstream 159748 26383591 ~ 26393733 (+)
G53109 NA non-coding upstream 122860 26096359 ~ 26099635 (+)
LOC120559215 NA non-coding upstream 225401 25995233 ~ 25997094 (+)
G53056 NA non-coding upstream 411448 25809713 ~ 25811047 (+)
LOC120558677 NA non-coding upstream 1207097 25009989 ~ 25015398 (+)
G52892 NA non-coding upstream 1262392 24959816 ~ 24960103 (+)
G53221 NA non-coding downstream 101378 26325221 ~ 26325468 (+)
G53222 NA non-coding downstream 102076 26325919 ~ 26329616 (+)
G53223 LOC103362778,LOC108236819,LOC101165391 non-coding downstream 106241 26330084 ~ 26330628 (+)
G53239 NA non-coding downstream 140599 26364442 ~ 26364837 (+)
G53248 LOC101164642,LOC104966947,LOC100690915,LOC102195969,LOC104926428,LOC101062277 non-coding downstream 173356 26397199 ~ 26402428 (+)
G53096 ybx1 other upstream 145831 26071585 ~ 26076664 (+)
tprg1l tprg1l,LOC102784883,LOC106513028 other upstream 474174 25743589 ~ 25748321 (+)
G52871 LOC104956590 other upstream 1265165 24953442 ~ 24957330 (+)
LOC120559118 LOC102791662 other upstream 1277175 24940795 ~ 24945320 (+)
ctnnbip1 ctnnbip1 other upstream 2408089 23791447 ~ 23814406 (+)
G53232 LOC104966952,LOC103362776,LOC102800046,LOC102208894 other downstream 128617 26352460 ~ 26353463 (+)
LOC120559113 LOC108236696,LOC104966950,LOC103362773,LOC103384494 other downstream 154349 26378192 ~ 26383047 (+)
atp5f1e NA other downstream 219207 26443050 ~ 26444890 (+)
LOC120559571 vapb,LOC100711919,LOC102796136,LOC101481364 other downstream 259689 26483532 ~ 26537351 (+)
gnas gnas,LOC102796627,LOC104936173 other downstream 266599 26490442 ~ 26523888 (+)

Expression


Co-expression Network