LOC120558559



Basic Information


Item Value
gene id LOC120558559
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 42128243 ~ 42134658 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>XM_039799608.1
AGACGGTCCGAGCTGCAGACTGTCAGTCGATGCCAACTGCACTGCAGAGATGGAGAACAGACGTATACATTTGGCTTGTGGACGTTTCTGCCCCTACATCGCAGTCATCGCCGTTTTCATCCTGTTTGGCATCAACTTCGAATGCACCCGCAAACCACAAGTCTTTGACTGCAACGTGTACCAGGCTCTACCATTTTTCATAGTTTTCCTGTTGATTCTGTGGACAGACAGCTCGTTTCAGAGCGTCTGCAGACTCCTGTGCTCAGGTGTGCCCCGaggcacacacacccacacctacAGTTTTTGGGGTTCTTTCTTCTATCACATTATCAAGGCAGCGTTCATCGGCCTGCTGTGGGTTGTTGTGGTTTTGATCAACGGAAACTGGTACGTCTGCTGTCAGAACGATGGCTCTGAACAACAGAGACAGTTGGCCTGCAAAGCCGTGGGGACGATCACTGAAGAGGAACGAGTGACCATCGCTGAACTGAAGAACAAGTCCAGGGTTATTGGCTCCTTTCTGCTCTTTGTTATCGTTTGTGTGCCAGCCCTGATGGCGTCTCTCGGATGGAGGAAATGTTCCAGAAGGAAACAGTTTGAGAAACTGATgttagaggaggaggaaaaggtgCTGAAGGAGGTTCTGAGGAAATCAGCCAGAGAGCACCTGAGCAGAGCGATTGAGGACAGAGTACGCAGGAGCCGATGGGAGGAGTGTTCTGATGTGGCTGCAGATCTGATCACATCTGAAGAGATCTTTCCTGAACACGAGGAGCGACATCCTCCACGGGAGACATGAGACCAGTTTCTGGTCACCTGGAATATTCCCTGCACCTCCGCCTAGCTGTCTACTTCACCAGTGTACTGGATCTTCACAGACCCTCCAGCTGGATCGCTTACACCCGCTGCTCCACCAGCTGCACTCGCCTGTTTTTTCCACATACAATATCCAAATAAAACCTCACCTTGTTCATTCAA
>XR_005639141.1
CAGACGGTCCGAGCTGCAGACTGTCAGTCGATGCCAACTGCACTGCAGAGATGGAGAACAGACGTATACATTTGGCTTGTGGACGTTTCTGCCCCTACATCGCAGTCATCGCCGTTTTCATCCTGTTTGGCATCAACTTCGAATGCACCCGCAAACCACAAGTCTTTGACTGCAACGTGTACCAGGCTCTACCATTTTTCATAGTTTTCCTGTTGATTCTGTGGACAGACAGCTCGTTTCAGAGCGTCTGCAGACTCCTGTGCTCAGGTGTGCCCCGaggcacacacacccacacctacAGTTTTTGGGGTTCTTTCTTCTATCACATTATCAAGGCAGCGTTCATCGGCCTGCTGTGGGTTGTTGTGGTTTTGATCAACGGAAACTGGTACGTCTGCTGTCAGAACGATGGCTCTGAACAACAGAGACAGTTGGCCTGCAAAGCCGTGGGGACGATCACTGAAGAGGAACGAGTGACCATCGCTGAACTGAAGAACAAGTCCAGGGTTATTGGCTCCTTTCTGCTCTTTGTTATCGTTTGTGTGCCAGCCCTGATGGCGTCTCTCGGATGGAGGAAATGTTCCAGAAGGAAACAGTTTGAGAAACTGATgttagaggaggaggaaaaggtgCTGAAGGAGGTTCTGAGGAAATCAGCCAGAGAGCACCTGAGCAGAGCGATTGAGGACAGAGTACGCAGGAGCCGATGGGAGGAGTGTTCTGATGTGGCTGCAGATCTGATCACATCTGAAGAGATCTTTCCTGAACACGAGGAGCGACATCCTCCACGGGAGACATGAGACCAGAGCGTGAAACCTCCATGATAAGCAGAACGAGACTAAACTCTGATTATGTTCCACAGATGTGACGTCTGAGCCCAAAGAATCAAATCCAGCTGTTTACTGGCTCACATGTATGTATGAggattagggatgcaccgatactGACGCCAGTATCGGTCCGATGCTGTGCGCATGGACTCGTACTTGTAATCATAAAGTTACTCTGATGATACCACACCTGATACCTCCTCATAGCAACGTGgcgttaacccttgtgttgtcgttgggtcaaatttgacccatttgaaaaaataatttatatcagaaatatgggtttctttcaaccaaattgcagaAAATTAACATGGGTGTATGGATAtatgttgtatgggttccatagAACATTCtatgcaggtaaaattaatgattactttcattgactTGGGGTGTTCCATTCAATTTtattgcatttgaaaaaaaggttttaaatggttttaaaccCGCATCCTGACTAAACCTGgacatataccagtctgtgttctactcaacatcctctggtctcgactattagtcaaaataattcataatttcagatTTTTTACCTCAAAAATGAGGTATAATATCATATAGAtttggtttattgaccatgataCAGAAAGCTTTGAAagcttttttgacaatttttttttttaaattgccaaAAGCATCgcaaaaaatgacaaacacgCTGGAAATCAATTATTAATTTTCAGTTTTGAAAGTTAATGATCAAGTTAATGACAAGTTCATTTTTCCAtcatcatttaaatgttttccaggcacaaggctgttgtttagtaaatctatcactGACTAGTTGTTCTAGTTGACAACAATATCCGAGCAGGCCAAAATcatctgtgtgtctgaaaaCACCCTCAGACCCCAGAGGGATCATTACAGTAATTACCAATATTGGTACTCGGTACCGGTGAGTACCCAAATGTAAGtacttgtatgtgtttttttaaaaagcgatattggtgcatccctagaaaTGATGATTTAGATTTGCTTAGTTTAAAAaagttctgttttctgttttgagtcttcatgaaaaaaacaatcatGCAGAACAATTGAattgttctttgttttttaattctAAAATCAGCATTTAATGTACGCTATGTTTAATAAGAAATCATCAGTGTTGTTAGTTTCCAAACGATATTCCAAAAATCTTCTCTTGTAATCACAGAATAGTATTGTGTTTTACTGAAACATAAatcctccatctctctgatTATTACTGCTGTTCTGTCAAATAATAAAGTACATTTAGGGACTGGtcgttttttatttaaatgcctACCAGAGGAGTTTTGGGGTCTTTGGTCAAAAAagacttgaccctcccttcgccaataatacatttttctacAACTGTCCAAAATGAATGgggaaaaaaggcatgaccctccaACATTTTTTATGCATTCTGTTATGGCTTGCGCTTGGCTAAGAGGAACAGCCAGGGGGGTTCATActgagagagctacatggagctaCATGTGCACCAAACAAGcaactttgaaattttgctgatTTCTGGGATagaaaagttgggtgacccacCCCACTAGACTAAAAAAAGTTGGATGACCCTCCACtcaaaaaagaataaagaaatatgaccctcccctattttcctctggtggtccattccataaaaaTGCCAAACGGTCCCTTAAGCAAGTAGTAATATCTACTGTTAGTGATGTTTTCAGCTACTCATTTCACATCTTAGAGACTCTATACTCTAAACCTCTGATGTtgctattttgtttttcttttacagtttgtgTACGAAGATTTCTCTGAACTAAGTCCTAATCATTTTAGATCTAATCATAGATTAGAGGTATATTATTGTAGTTTTGGTAGTTGAACCAACAGGCCTGTAGCTTCAGTGAGAAACTAAAAGCTGTTCACACAGTGTGCACTGCAGAGCTGGAGGAGCTGACACCTGCAGAATAGAAAGTATTCAGAACTCAACGCTGGTATGAACCGACCACAAGAACATGTGGTTTCTCTTTCTCAGGCCGACTCTTTCCTTCTTCAGCTGCGTCTCTCATCAGTATCCTGTTTGCATCCTGTCACTGCAGCGCTGCTCACCTTCATGTCTCTACTTCACAGTTTTACAATTCTGTGAAATTAATTTTCACTATGTaattattagaaaataaaaaagcagcGGAGTAGTAACGACCATTAAATGAGTTAACttaacttcatgcttcatccacacaaagcaaGTTGCTATCGCCACGAGTGGCAGCTTTATTCTGTCACGGCCCGCTGGCTGTGACCCTGGCCTCCTTCATGCTATGTGTGTGAACGTagtttttgtgttctttttctccttttgtgttttgttttggtgtCTGTCTCCGTGTTTTTGCTCTCTCCCACATGCTCTGGAAACCAATGGTGGGCGTGGTCACTCAGCTCCTGCCTACACACCTGTGGCTCATCAGACTACTCAGCACTCCTGTTCCTCAGCAACCGTTTACTTCCTTTATAAGCCAGGCCAACCTTCCAGTCCCCGCTGGATCGTTAGCCTTACCTTTTCTGGTCACCTGGAATATTCCCTGCACCTCCGCCTAGCTGTCTACTTCACCAGTGTACTGGATCTTCACAGACCCTCCAGCTGGATCGCTTACACCCGCTGCTCCACCAGCTGCACTCGCCTGTTTTTTCCACATACAATATCCAAATAAAACCTCACCTTGTTCATTCAA

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_039799608.1 False 978 mRNA 0.51 3 42128243 42134657
XR_005639141.1 True 3565 transcript 0.42 4 42128243 42134658
Loading

Neighbor


gene id symbol gene type direction distance location
LOC120558562 NA coding downstream 6772 42117744 ~ 42121471 (-)
LOC120558363 NA coding downstream 225475 41897815 ~ 41902768 (-)
LOC120558622 NA coding downstream 566608 41548861 ~ 41561635 (-)
LOC120558618 NA coding downstream 605954 41516985 ~ 41522289 (-)
LOC120559078 NA coding downstream 631738 41488131 ~ 41496505 (-)
LOC120559081 NA coding upstream 130868 42265526 ~ 42267943 (-)
LOC120558557 NA coding upstream 149978 42284636 ~ 42309616 (-)
LOC120559083 NA coding upstream 202835 42337493 ~ 42344971 (-)
LOC120558564 NA coding upstream 383126 42517784 ~ 42521088 (-)
edem2 edem2 coding upstream 592737 42727395 ~ 42740582 (-)
G57533 NA non-coding downstream 34466 42093445 ~ 42093777 (-)
G57271 NA non-coding downstream 354810 41621522 ~ 41773433 (-)
LOC120559836 NA non-coding downstream 369584 41757542 ~ 41758659 (-)
G57265 NA non-coding downstream 549327 41575016 ~ 41578916 (-)
G57199 NA non-coding downstream 586688 41541337 ~ 41541555 (-)
G57544 NA non-coding upstream 36034 42170692 ~ 42175743 (-)
G57546 NA non-coding upstream 45525 42180183 ~ 42180507 (-)
G57543 NA non-coding upstream 47068 42181726 ~ 42182319 (-)
LOC120558571 NA non-coding upstream 62498 42197156 ~ 42235046 (-)
G57548 NA non-coding upstream 90708 42225366 ~ 42284125 (-)
LOC120558546 NA other downstream 209500 41904140 ~ 41918743 (-)
LOC120559079 NA other downstream 396442 41716870 ~ 41731801 (-)
LOC120559188 arl8a,LOC100698319,LOC105027762,LOC103362481 other downstream 990517 41126335 ~ 41137726 (-)
G57146 NA other downstream 996773 41130882 ~ 41131470 (-)
G57134 NA other downstream 1017576 41012073 ~ 41110667 (-)
LOC120559080 NA other upstream 39332 42173990 ~ 42188455 (-)
G57595 NA other upstream 401564 42536222 ~ 42651415 (-)
G57599 NA other upstream 493098 42627756 ~ 42650751 (-)
LOC120559085 LOC106531971 other upstream 497559 42632217 ~ 42660186 (-)
LOC120558550 LOC101476713,LOC102213613,LOC102303270,LOC100708795,LOC107104441,LOC107391492,LOC103384463 other upstream 545660 42680318 ~ 42698353 (-)

Expression


LOC120558559 Expression in all Baseline Samples

Bar chart with 13 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
End of interactive chart.

LOC120558559 Expression in each Bioproject

Bar chart with 8 bars.
LOC120558559 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
End of interactive chart.

Co-expression Network