LOC120558593 (LOC106915442,LOC106565226,LOC103152765,LOC106947658)


Basic Information

Item Value
gene id LOC120558593
gene name LOC106915442,LOC106565226,LOC103152765,LOC106947658
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 32688887 ~ 32694442 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799643.1
ACGGACAGGGAGAAGATACTTAGAGGGACTTGACTCTCCTCTTTGTGTTCTCCACTGCTTTGCCatacctctctttctctgctcccCCTTCTCTCTGTGGATTCTTTCCTTTCAGAGGAAACAAAACCGGCCATCAAGATGACAACAAAAGTTAGGACCTCGAGCATGCGGTCCAGCAGTGGAGGCTTTTCTAGTGGAGGAGGCCGCAGCAGCGGCGGTGGTTTAAGCTTTAGTAGTGGTAGCTACGCCGGTGGTGGTGGCGGCGGTGGTGGCGTCCGCCAATTTTCCTCAAGATCCATGTCGTTCATGGCGCCAGCCAGAGTGTCAAGTACCTCAGTGCGGCAAAACTTTagcagtggtggtggtggtggtggttttggtggtggtggttttggtggtggtggtttcGGCAGTGGTTTTGGCGGTGGATTTGgcgctggtggtggtggtggcggcAGCGGTGGCGGCGGCGGCGGTTTCAGTGCTTATGGTTTCAGTGGTATGGGtatgggtggtggtggtggtggcggcgGAGGTATGGGAATGCCCATCACAAACGTCCAAGTCAACCAGAGCCTGCTGGCCCCCCTGAACCTTGAGATCGACCCCAACATCCAGACTGTCCGAACCCATGAGAAAGAGCAGATCAAGACTCTAAACAACCGCTTCGCCAGCTTCATTGACAAGGTTCGCTTCCTGGAGCAGCAGAACAAAATGCTGGAGACCAAGTGGAACCTGCTGCAGGAACAGACCACCACCCGCTCCAACATCGACGCCATGTTCGAGGCCTACATCGCCAACCTGCGCAGACAGCTGGATGGGCTCGGCAATGAGAAGGTTAAGCTGGAGGGAGAGCTGAGGAACATGCAGGGACTTGTGGAGGACTTCAAGAACAAatatgaagatgaaatcaaCAAGCGTGCTTCTGTGGAGAATGAGTTTGTGCTGCTTAAGAAGGATGTAGATGGCGCCTACATGAACAAGGTTGAGCTGGAGGCCAAGGTTGACGCCCTGCAGGATGAGATCAACTTCCTCAGAGCTGTCTATGAGGCTGAACTTCGTGAGCTCCAGGGACAGATCAAGGACACCTCAGTCATCGTGACGATGGACAACAGCCGCGATTTGGACATGGACTCCATTGTGGCTGAAGTCAAGGCTCAGTACGAGGCCATCGCCAACCAGAGCCGTGCTGATGCTGAATCATGGTATCAACAGAAGTACCAGGAGATGCAGAGCAGTGCAGGCCAGACCGGAGATGAACTTCGCAACACCAAGAGTGAGATTGCTGAGCTGAACCGCATGATTAGCCGCCTACAGAATGAGATTGAGGCAGTCAAGGGACAGCGTGCCAACCTGGAGGCCCAGATCGCTGAGGCTGAGGAGCGCGGTGAGCTGGCAGTGAAGGATGCCAAGGCCCGCATTAGGGACCTGGAGGAAGCCCTGCAGAGAGCCAAACAGGACATGGCCCGCCAAGTCCGCGAGTACCAGGAGCTCATGAACGTCAAGCTGGCTCTGGACATTGAGATCGCCACCTACAGGAAGCTTCTGGAAGGAGAGGAATTAAGAATTGGCCATGGCGGTGAAAACGCAACCATCCACATACAGTCCTCAAGCAGCGGTGGCGGTGGCGGAGGCGGCGGCGGATTTGGTATGGGCTTTGGTTCCGGAGGCGGCGGAGGCGGCGGCGGttatggcagcagcagcagctttggCGGCGGGATGTCCATGTCCGGTGGTGGCTACAGCAGCGGCGGCTTTGGCAGCGGGATGTCCATGTCCGGTGGTGGCTACagcagcggcggcggcggcggctttgggagcggcggcggcggcagcagcagcagcagtttcatCACAAAAAAGACCACCAGCCAAGTCTCTAGCCGCCGTTATTAAAAACAGCAGTTGTCTTTATCTCACTCTTCTTCTATAAGGTTCTTCTCCCCTTTCCCTGACAACCACTTATAAAAGCTTCCATAAACCCCATCACTTGTCTCCTTGGAGACACAGCAGCCTCACAGACATTTGCATTTGACAATTTTCAGATGGCAGATCCATGTAATGGGACAGCTCTCTTTGGCATTTAGTTACTGTGTTGCTGCTCCCTCTTTGGCACCACCTACCTACAGAGAGTCAAAGATTACATAAAAATAGAAGTAGAGGCAGAGAAATGGTTAgaccaaaaacaaagaacaacagAGATGTGAGTCAGCCCTCTCTGGCTGTCTTTTGGTTGCTGGATCTGCTGTCATGCAGACAAGAGGATACTTGTAGTGTGATGACAGAGAATCCGTACAAGGCAACAATCATTGCACATAAAATGCCAACAGCAGTTCTTAGATTTGCACAGAAGGAGGTCCAAATGTGGTTGTTCATGATTTTTTAAAGCAAACATGGGATAACTCCTCCTATCTGCAATGTTTCATCTGTTGTCTCACATAGGTCATTTTGTTGTGCATTTTGACATCATCAAAAGCAGCCACATTCACAATACTTTCATATATGAAATTTGGgatcctcttttcttctcctgtTCAGAGGGAAAATGAGCTCTCCAGTACAGTAAATAAATGGTGTTTTGATCCTCCTTTACCTCCATTTCCactctgaataaaaaaagaaaccagATTTATTGTGAATTTGTACCACTAAACCATCTGGAATAAACCTGATTTCATATTCA

Function

NR:

description
PREDICTED: keratin, type II cytoskeletal 8-like isoform X2

GO: NA

KEGG:

id description
K07605 KRT2; type II keratin, basic

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799643.1 True 2683 mRNA 0.52 9 32688887 32694442

Neighbor

gene id symbol gene type direction distance location
si:ch211-220i18.4 LOC103373814,LOC108233036,LOC102211047,LOC100693975,LOC102782987,LOC102291816 coding downstream 101924 32570308 ~ 32586963 (-)
cpne9 cpne9,LOC100694516,LOC101469997,LOC102776939 coding downstream 177822 32413064 ~ 32511065 (-)
LOC120559355 klf15,LOC103367789,LOC101076255 coding downstream 296344 32381884 ~ 32392543 (-)
LOC120559902 twist3b,LOC104929895,LOC103352822 coding downstream 1219102 31465768 ~ 31469785 (-)
trnaq-uug_1 NA coding downstream 1461756 31227060 ~ 31227131 (-)
krt8 LOC104959359,LOC106525573,LOC108233108,LOC107391340,LOC107088570,LOC100702817,LOC103152763 coding upstream 26391 32720833 ~ 32726627 (-)
tmem106c tmem106c,LOC108233084 coding upstream 197823 32892265 ~ 32903713 (-)
sars1 sars coding upstream 216316 32910758 ~ 32933014 (-)
LOC120559545 NA coding upstream 229408 32923850 ~ 32927539 (-)
si:ch211-207e14.4 NA coding upstream 240025 32934467 ~ 32949982 (-)
G54735 NA non-coding downstream 249 32688205 ~ 32688638 (-)
G54734 NA non-coding downstream 2273 32683360 ~ 32686614 (-)
G54733 NA non-coding downstream 6371 32682162 ~ 32682516 (-)
G54731 NA non-coding downstream 13422 32675265 ~ 32675465 (-)
G54724 NA non-coding downstream 91394 32596572 ~ 32597493 (-)
LOC120558525 NA non-coding upstream 479424 33173866 ~ 33183318 (-)
LOC120558313 NA non-coding upstream 613689 33308131 ~ 33308924 (-)
G54922 NA non-coding upstream 624378 33318820 ~ 33319024 (-)
G54947 NA non-coding upstream 810371 33504813 ~ 33507223 (-)
G54949 NA non-coding upstream 812992 33507434 ~ 33508423 (-)
LOC120559593 plxnb1,LOC103373813,LOC107100289 other downstream 22428 32590983 ~ 32666459 (-)
LOC120558955 LOC104919264,LOC102777709,LOC100695043,LOC102209489,LOC103373809,LOC103152775,LOC101470785,LOC106963186 other downstream 365612 32292942 ~ 32323275 (-)
tafa5l LOC102786421,LOC104919510,LOC100700110,LOC103384901,LOC106518908,LOC107086703 other downstream 2616188 29971196 ~ 30072699 (-)
cdk11b LOC103366252,LOC101466870,LOC100697195 other downstream 2923014 29752661 ~ 29765873 (-)
clcnk clcnka,LOC104952128,LOC102786725 other downstream 3195912 29474503 ~ 29492975 (-)
G54756 LOC107088573,LOC106566972 other upstream 72915 32767357 ~ 32773486 (-)
G54834 NA other upstream 185751 32880193 ~ 32887290 (-)
zgc:158296 NA other upstream 272193 32966635 ~ 32971163 (-)
lamb2 NA other upstream 861358 33555800 ~ 33614940 (-)
G55124 fam110a,LOC104960682 other upstream 1329576 34024018 ~ 34127495 (-)

Expression


Co-expression Network