LOC120558637 (syp,LOC103367257,LOC102314167,LOC102203308)


Basic Information

Item Value
gene id LOC120558637
gene name syp,LOC103367257,LOC102314167,LOC102203308
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 38538673 ~ 38567635 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799720.1
ctctctcctcctcctcctcacccatcctccctccatctcctaTCTCTCTCCTCTCGACACACGGCAGGATGGACGTCGTAAATCAGcTGGTGGCCCAGGGCCAATTCAGGGTGCTGAAGGTTCCTCTGGGCTTCATTAAGGTCTTACAATGGTTCTTCGCCATCTTTGCCTTCTCCACCTGTGGTAGTTATTCTGGGATGTTCCGGATGGCGGTGGAGTGTAAGAACCGGACAGAGAGCGACCTGAGCATAGAGGTGGAGTTTGAGTATCCGTTCAGACTTCACCAGGTGTATTTTGACGCCCCTACCTGTAAGGGTGAGGACAAGGAGCGTCTCTTCCTGATTGGCGACTACTCCTCCTCGGCAGAGTTCTTCGTCACCATCGGCGTCTTCGCCTTCCTCTACTCCACGGCGGCTATCACCATCTACGTCTTGTTCTTCGAGAAGTACAAGGAGAACAACAAGGGGCCGCTGATCGACCTGGGTGTGACCGCGGTGTTTGCCTTCATGTGGCTGGTGAGTTCGGCGGCCTGGGCCAAAGGTCTGTCCGACGTGAAGACGGCGACTGACCCCGACAAAGTGATTACTCTGATTACCGCCTGCGACAGTGAGGGGAACAGCTGCCGTGAAGTCCACGACCCTGTCATGTCTGGACTCAACACCTCCGTGgCTTTTGGTTTTATTAACTTGGTCCTGTGGGTGGGAAACCTGTGGTTCGTCTTTAAGGAGACAGGCATCATCGCTCCCTTCATGCGAGCTCCACCTCCTCAGGAGAAAGCTGCTGCACCAGACGCTTACGGCCAGCAGGGGGCGTACGAACAAGACCCGTACGCCAGCAACCAGGGAGGCTACCAACCCGATTACAGCCAGCAAGGATACAACCAGGATGCAGAGTACGGTCAGGGGGCGCCCACCTCCTTCGCCAATCAGATGTGAACTGACAGGAAGCAGAAAACACCGGAGTAAACCACCAGTGGGTCGCCTGCAAactacccacaatgcaacactcctgtctgtctgcaaaGTCAATGGGGGAGGGGAAGGGAGGGTTAAAAGAGGGATGGGGTTTTAAATGTTCACTATAAATGAATCGATGTgtaaaggataaaaaaaaaaaaaagaga

Function

symbol description
syp Enables cholesterol binding activity. Predicted to be involved in endocytosis; regulation of neuronal synaptic plasticity; and regulation of opioid receptor signaling pathway. Predicted to act upstream of or within cellular response to organic substance. Located in neuron projection. Implicated in non-syndromic X-linked intellectual disability 96. Biomarker of Alzheimer's disease.

NR:

description
PREDICTED: synaptophysin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799720.1 True 1123 mRNA 0.54 8 38538673 38567635

Neighbor

gene id symbol gene type direction distance location
pcsk1nl NA coding downstream 7610 38508492 ~ 38531063 (-)
LOC120559059 LOC103370165 coding downstream 186120 38343487 ~ 38352553 (-)
LOC120559058 NA coding downstream 201767 38329266 ~ 38336906 (-)
LOC120559803 LOC102788279,LOC102300940,LOC107099231,LOC104961425 coding downstream 332582 38193260 ~ 38206091 (-)
fgd1 fgd1,LOC103367265 coding downstream 349881 38133222 ~ 38188792 (-)
LOC120558856 slc6a8,LOC100704248,LOC102310663 coding upstream 765627 39333262 ~ 39348187 (-)
gripap1 gripap1 coding upstream 1472350 40039985 ~ 40132853 (-)
LOC120558739 NA coding upstream 1683921 40251556 ~ 40254265 (-)
LOC120559070 NA coding upstream 1968437 40536072 ~ 40566494 (-)
LOC120559367 NA coding upstream 2013036 40580671 ~ 40594368 (-)
G56493 NA non-coding downstream 4430 38533986 ~ 38534243 (-)
G56563 NA non-coding downstream 34385 38503603 ~ 38504288 (-)
G56559 NA non-coding downstream 56965 38480285 ~ 38481708 (-)
G56534 NA non-coding downstream 99362 38437766 ~ 38439311 (-)
G56541 LOC106536805,LOC103384381,LOC103130742 non-coding downstream 114891 38420981 ~ 38423782 (-)
G56547 NA non-coding upstream 21738 38589373 ~ 38659203 (-)
G56575 NA non-coding upstream 35412 38603047 ~ 38604979 (-)
G56579 LOC101065103,LOC105912194,LOC105906823 non-coding upstream 54183 38621818 ~ 38623939 (-)
G56593 NA non-coding upstream 87340 38654975 ~ 38657609 (-)
G56631 NA non-coding upstream 105444 38673079 ~ 38673367 (-)
G56564 NA other downstream 6916 38531252 ~ 38531757 (-)
G56540 NA other downstream 24814 38419282 ~ 38513859 (-)
G56544 NA other downstream 37962 38429216 ~ 38500711 (-)
G56557 NA other downstream 59509 38477650 ~ 38479164 (-)
G56539 NA other downstream 132486 38405260 ~ 38406187 (-)
G56590 NA other upstream 74719 38642354 ~ 38645449 (-)
G56600 NA other upstream 227337 38794972 ~ 38805188 (-)
G56645 NA other upstream 334849 38902484 ~ 38902968 (-)
LOC120558769 NA other upstream 346085 38913720 ~ 38916360 (-)
LOC120558774 NA other upstream 387769 38955404 ~ 38957200 (-)

Expression


Co-expression Network