arhgef16 (arhgef16)


Basic Information

Item Value
gene id arhgef16
gene name arhgef16
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 26051537 ~ 26071198 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799745.1
GAAGTGAGTGAGTAAGAAGAAATATGTGACAGAGGGGAGCGGAGGACTAGGCTACATCTGCTGCTAGAGCTGCACTTCTCATAGAACCGGACAGCCCGAGAAGCGCCGGACTGAGTTGTCATATTATTTCATAGGAAGGCTGGTGTTTGAAAGGTCGCCTCACGCAGACTCCTTTAATGTTGTAAGTGCTGAAGAGCTTGTTAGACCGTGTCGAGGTGACGGTGGGAGGACGCCATGGCCAACAGCCAGTCAGACAGCTGCATGGGCGACCAGGTCCCTCTGGTTCTGGTGAGCCGCTTCTCCACAGAACTCCATATATCTGAGCCTGGCGATGATTGCTGCCAGTcccaaagcacccccacaccccaaTCTGAAACATCCACGCCCCAGGAAGATGTAGTAGAAAGGCTGGTGGTGCCTCAGCCGGTGGTTTTGAGCACCCAGAGTCCTGCAGCGCAGAAGGTTGGCACCCACCAGCTCATACCCAAGTATTTAGCCGGCCGGCCTAAAAACCGCCACCACACCACAGTGGTGACGTTCCCAGTGGGACTGGAAAACTCCACCAGTGTAACCCGGAGCCGTCACTCAACCCAGGGGCCAGATTTGTCCTGGGAGGATTATGACAGTGATGGAGACGGCTTTGCTTTGAGGAGGAACCGCAGGAACAAGTCATACAGAGCCGCTGTGACAAGCCTGGACATTGAAGCCATGGCATCGGAACAAGGGCCTGCAACCACACTGAAACCGGTCCTAGAGGACAGAGCAGCCAGTCCTGGTCGATCTCGCAGCACTGGACGCAAGCGATTCCTGGGGAGAAAGAGGAACCAGAACCAACATGGGTCCTTCAAAGATGCTACACCGTGCCTCTACCAGGAGATCCGTGAACGAGGGCTGCACTCCACCAACCAGGATGAGCTGCTGGATGACTTTGTGGTGGTGGAGCCTCCCGTGGAGGACCAGGGCATCGTAGTGAAGAGCTACCGGCCGGCACAACTCACTTGGAGCCAGCTGCCACAGGTGAGGGACACAGGTATCCTGACATTGGTCTCAcctcaggagagaaagagacaagagGCCATTTTTGAGATCATCACATCAGAGCATTCCTACCTGCACAGCCTGGGCATCCTGGTGCGTCACTTCAAGAGTAGTGAAGCTCTGAGGAAAACAATGACGGCCACAGAGCACCACCACCTCTTCTCCAACATCTCTGTCATTCACCAAGTCAGCAAACTGTTTTTTGAGGACCTTGAACGGCGTCACCATGACAACCCAGTGATCCGGGACATTAGCGATATTGTTCAGAATCACGCTGCCCACCACTTTGAGCCCTACATTGTCTACTGCTCCAACGAGACCTTCCAGCAGAGGACGCTGCAGAAGCTGCTGACCAGTAACGCTGCGTTCAAAGAGGCCCTGAAACAGATTGAAGGAAGCCGTGAATGCGGAGGCCTGCCCATGATCTCTTTCCTCATCCTTCCCATGCAGCGAGTCACCAGACTGCCACTGCTGCTGGATACGATCAGCCAGAAAACTCAAGACACGACAGCAGAGCACTTTGCTGCTGTTTGGGCGCTGCACGCCATCAGCAAGTTGGTCAATAGCTGCAATGATGGAGCTCGGCGAATGGAGAGGACAGAGCAGATGTACACCATCCAGAAACTTTTAAATTTTGGTAAAATTAAGCCATTTCCTCTGGTGTCGTCGTCGCGGTGGCTGAAGAAGCGCGGTGAGCTAGCCTTCGGCACTGAAGAGCTGAGCATCTGGAGGGCTTTCAGCAACCGGAGCTACTACCTGTTTCTCTTCAATGATGTACTGATCATCACCAAGAAGAAGAGTGAGGAGAGCTTTGTGGTGATGGACTACGCTACTCTGGAAAATGTGGAGGTTGGGGAGGATGCAGAAGGACGGACCTCTTCGCCTCCCAAAAACAGCCCCAGCTGCTATCTTTCCTTCAGGCTGCTAATGAGCAAGAACAGCGATGGGAAAGCAGAGCAGATGACCCTGGTGGCCGAGTCCAGGGTGGACCGGGCACGTTGGATAGTTGCTCTGACAGAACACAATCAGGCAGGAGTTTCCCCTTGTAAAGACGGTCTGCCACAGTATGAGGCCACCAAAGCCTACATGCCAAAGGAGCCGGATGAGTTGGGGCTGCAACAGGCTGAGCTTGTCATCCTGCtgcagaaagaggaagCCTGGTGCTATGGGGAGAGAAtgcgagatggagagagaggctGGTTTCCTGCTACCTGTGCCACAGAGATCACCAACCCCACTGCCATGGAGAACAATGTGCAACGCATGAAGCGCCTGCGCAAAGAGACCAATGTTTGAGGGACTCTCAGGATGTACAAAATAACAAACACCTTGCAGTAGACTGGTGACTCTCATAATGActcatgtttttgttgagacTGCATTGCAAGAATGGCCATTTATGCTATCCTGGTATCTCAGTGGTCCAAGATGAATACAATGTGACCATAAGGTTGCTGGATTGAATCCAGCTAGTGTCAATGTTTTGGAATTCTACTGTCAAGACTGTCCAATTATTTTAAAACAGGTTGGATTAACAGTTAAATCTCAACCAAAAACTGTATAAGGGTGTTTTTGTCCATCTTCTAAATGTGTAGCCAATAAAGGACAGACATTTGCAAGAGCAGGATTTACTGGCCAACAGTGGACATCTTTACTTGTACAGCACTATCCTGTTATTTTCTTGTTGGTGTGAATGTAAATTTAAACTTAATTGCTATAGTAAACAATGAGCCTCC

Function

symbol description
arhgef16 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in activation of GTPase activity. Orthologous to human ARHGEF16 (Rho guanine nucleotide exchange factor 16).

NR:

description
rho guanine nucleotide exchange factor 16

GO: NA

KEGG:

id description
K20688 ARHGEF16; Rho guanine nucleotide exchange factor 16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799745.1 True 2774 mRNA 0.51 15 26051537 26071198

Neighbor

gene id symbol gene type direction distance location
espn espn coding upstream 1051 26001292 ~ 26050486 (+)
her3 NA coding upstream 183559 25866763 ~ 25867978 (+)
LOC120559217 LOC103362599 coding upstream 193656 25853734 ~ 25857881 (+)
LOC120559220 NA coding upstream 211105 25834546 ~ 25840432 (+)
LOC120559218 NA coding upstream 221635 25823768 ~ 25829902 (+)
si:dkeyp-100a1.6 NA coding downstream 13466 26084664 ~ 26086372 (+)
zgc:154075 LOC104945171,LOC101464044,LOC102304528,LOC100692795,LOC102780086,LOC103362596 coding downstream 31450 26102648 ~ 26109344 (+)
LOC120559097 NA coding downstream 56119 26127317 ~ 26136177 (+)
ubr4 NA coding downstream 78152 26149350 ~ 26212156 (+)
LOC120558413 LOC103372574 coding downstream 145316 26216514 ~ 26218082 (+)
LOC120559215 NA non-coding upstream 54443 25995233 ~ 25997094 (+)
G53056 NA non-coding upstream 240490 25809713 ~ 25811047 (+)
LOC120558677 NA non-coding upstream 1036139 25009989 ~ 25015398 (+)
G52892 NA non-coding upstream 1091434 24959816 ~ 24960103 (+)
G52827 LOC107550338,LOC103365918,LOC107551495,LOC104947949 non-coding upstream 1298357 24751895 ~ 24753180 (+)
G53109 NA non-coding downstream 25161 26096359 ~ 26099635 (+)
G53221 NA non-coding downstream 254023 26325221 ~ 26325468 (+)
G53222 NA non-coding downstream 254721 26325919 ~ 26329616 (+)
G53223 LOC103362778,LOC108236819,LOC101165391 non-coding downstream 258886 26330084 ~ 26330628 (+)
G53239 NA non-coding downstream 293244 26364442 ~ 26364837 (+)
tprg1l tprg1l,LOC102784883,LOC106513028 other upstream 303216 25743589 ~ 25748321 (+)
G52871 LOC104956590 other upstream 1094207 24953442 ~ 24957330 (+)
LOC120559118 LOC102791662 other upstream 1106217 24940795 ~ 24945320 (+)
ctnnbip1 ctnnbip1 other upstream 2237131 23791447 ~ 23814406 (+)
tmem201 tmem201,LOC102777799 other upstream 2286372 23746365 ~ 23765165 (+)
G53096 ybx1 other downstream 387 26071585 ~ 26076664 (+)
G53232 LOC104966952,LOC103362776,LOC102800046,LOC102208894 other downstream 281262 26352460 ~ 26353463 (+)
LOC120559113 LOC108236696,LOC104966950,LOC103362773,LOC103384494 other downstream 306994 26378192 ~ 26383047 (+)
atp5f1e NA other downstream 371852 26443050 ~ 26444890 (+)
LOC120559571 vapb,LOC100711919,LOC102796136,LOC101481364 other downstream 412334 26483532 ~ 26537351 (+)

Expression


Co-expression Network