alas2 (alas2,LOC108236847,LOC106524166)



Basic Information


Item Value
gene id alas2
gene name alas2,LOC108236847,LOC106524166
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 24990894 ~ 24999555 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>XM_039799789.1
cacacacacacaccctaagcTGAGACCCATACCACCCCTCTGAAGGGTGGGAGCAGAGCTGATTGCTTTTCAACATCTGACTAATAACTGTTGACACTTTCTGACGTTCTGTCTATTTGCTGTTCTGAAGTTCGTCCTCAGTGCAGGTCAACAGAGTAAGAACAGCTGCACTGCAATGGCTGCCTTCCTTCATCACTGCCCCTTCCTAAAGTCTGTGCCTAAGCCAGCTTTGAGGAGAACTGGAGCCACCTTGCTGTCTCTGGCCGATCAATGCCCCATCATCACTCGCCAGATCAGTGTGAGCGGCACAGCTTCTCTGGAGGCCAAGGTGGGCGTCTCACCCATCAAACCCAGGAGTCACCAACTTTCCACAGTTGATCAAAGGAGGCTGTTTGCTCTGAGAGCTACTGAGGTTGCTGTGTCTGTATCGAAGGGCTGCCCCTTTGTCACCTCTGAGATTGGGATTGTCCGAGCCAGCCCTGAAGTACAGGAGGACGTCCAAGATGGTTTGATGACTTCTCTGTTGAAGGGTTTAAAGGATGCAATCCTCCCAACACCAGCTCAACCCAACACTGTCACCCACCTCCTCAAAGACAACATGGTTGGCCCCAGCTATGACTATGACCGCTTCTTTATTGAGAAGATCGCTGAGAAAAAGAAGGACCACACATACAGAGTCTTCAAGACCGTGAATAGGAGCGCTGAGGTCTTCCCGTTTGCTGAGGATTACTCCATCTCTGGGCGGGAGGGCTCCCAGGTTTCCGTCTGGTGCAGCAATGACTATCTGGGAATGAGTCGACACCCACAGGTGCTCAGTGCAATCAGAGATGCTGTGGAAAAGCACGGCGCAGGAGCAGGCGGGACCAGGAACATCTCAGGCACCAGTAACTTCCATGTGTCACTGGAAAAGGAGCTGGCACAGCTGCACCAGAAAGACGCAGCTCTGGCCTTCTCCTCCTGCTTCGTGGCAAATGACTCCACCCTCTTCACTTTGGCTAAGATGCTGCCAGGGTGCGAGATCTACTCTGATGCAGGGAACCACGCATCGATGATTCAGGGCATCAGGAACAGCGGAGCCAAGCGCTTCATCTTCCGCCACAATGACAGTCGACACCTGGAGGAACTGCTGCAACGCTCTGACCCCAAGACACCCAAAATAGTAGCTTTCGAGACTGTGCACTCAATGGATGGTGCCATATGTCCTCTGGAAGAGTTATGCGATGTCGCTCATCGTTATGGAGCTCTGACGTTTGTCGATGAAGTTCACGCTGTGGGCCTGTACGGAGCCCATGGAGCTGGAGTGGGAGAGAGGGACAACATTATGCACAAGATTGACATTGTTTCTGGAACTTTAGGCAAAGCCTTTGGATGTTTTGGAGGCTACATCGCCAGCAGCGCCGCCCTGGTGGACACAGTGCGCTCCTTCGCAGCCGGCTTCATCTTCACCACTGCCCTGCCCCCGATGGTCCTGGCTGGAGCCCTGGAGTCTGTCCGGGTCCTGAAGAGCCCCGAGGGGCAGGTGCTCCGCAGAGCCCACCAGAGGAACGTCAAACACATGAGGCAGCTGCTCATGGATAAGGGCCTACCTGTGGTCAACTGTCCTAGCCACATCATCCCCATACGGGTGGGCAACGCTGAGCTCAACACCAAGGTGTGTGACACCCTGCTGGAGAGACACAACATCTACGTCCAGGCCATCAACTACCCCACGGTGCCTCGTGGTGAGGAGTTGCTGCGCCTGGCTCCTTCTCCTCATCACAACCCCGCCATGATGGACTACTTTGTGGAGAAACTGGTGGAGGTGTGGCAGGAGGCAGGGCTCCAGGTCAGCAGCCCGGCCACAGCTTCCTGCACCTTCTGTGACCGTCCGCTGCATTTTGACCTTATGAGTGAGTGGGAGAGATCTTACTTCGGCAACATGGAACCACAATACATTACTGTGTTGGCATAATACCAAAGTACATGTAGCTTCTCAACAGAagttacacatacagtaaatgcatAAATGTTATTCTAAATTCAACATCTTTTTAAATGATAAAGTCCTTCTTCAAATGCACTGAGAAGAGTACTGATTTTAGCTTTAACGTGAGTGGTATGAACTAAATTCcaatatttatttctgttttcctGTATTTATGCTTATTAAATTGTTTGCTGTCATGGATATGATTAAAGAAATTGTGCCTTCTCCATTTCAAAAGCATAAAACCTGCACGTGGGCACTTTCTTAAATCTATTATCTAGGTGTGATGGTttgaattaaaatatatttaatttcatTATGCATGATTTCCTTCATACAATATAATGATCATGACCATcatgttttgtttatgttaCAATAATTCAATTACTGATTATTCAGTCATAAAATGTATGAAGTGCTGAGGTTAAATCATTCATAAAATACGGGATAATAAAACATTCTATACA

Function


symbol description
alas2 Predicted to enable 5-aminolevulinate synthase activity. Acts upstream of or within heme biosynthetic process; hemoglobin biosynthetic process; and hemopoiesis. Predicted to be located in mitochondrial inner membrane. Predicted to be active in mitochondrion. Is expressed in erythroid progenitor cell; hematopoietic system; mesoderm; and pronephric duct. Used to study sideroblastic anemia. Human ortholog(s) of this gene implicated in cutaneous porphyria; erythropoietic protoporphyria; hemochromatosis; sideroblastic anemia; and sideroblastic anemia 1. Orthologous to human ALAS2 (5'-aminolevulinate synthase 2).

NR:

description
5-aminolevulinate synthase, erythroid-specific, mitochondrial-like

GO:

id name namespace
GO:0006782 protoporphyrinogen IX biosynthetic process biological_process
GO:0035162 embryonic hemopoiesis biological_process
GO:0020027 hemoglobin metabolic process biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0003870 5-aminolevulinate synthase activity molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG:

id description
K00643 E2.3.1.37, ALAS; 5-aminolevulinate synthase

RNA


RNA id representative length rna type GC content exon number start site end site
XM_039799789.1 True 2436 mRNA 0.49 10 24990894 24999555

Neighbor


gene id symbol gene type direction distance location
LOC120559115 LOC104919424,LOC101480694 coding upstream 71128 24838584 ~ 24919766 (+)
pigt pigt,LOC102793327 coding upstream 197792 24785963 ~ 24793102 (+)
sycp2 NA coding upstream 240552 24722289 ~ 24750342 (+)
ppp1r3da ppp1r3d,LOC104919428,LOC100701819 coding upstream 269046 24719775 ~ 24721848 (+)
ttll9 ttll9 coding upstream 275261 24710783 ~ 24715633 (+)
znf362b LOC104920215,LOC103353008 coding downstream 23070 25022625 ~ 25034515 (+)
LOC120558682 LOC103353010 coding downstream 55582 25055137 ~ 25058398 (+)
zmynd12 zmynd12 coding downstream 58905 25058460 ~ 25065176 (+)
LOC120558685 foxj3,LOC100698572,LOC102787620 coding downstream 89350 25088905 ~ 25154501 (+)
si:ch211-156j16.1 NA coding downstream 155797 25155352 ~ 25165194 (+)
G52892 NA non-coding upstream 30791 24959816 ~ 24960103 (+)
G52827 LOC107550338,LOC103365918,LOC107551495,LOC104947949 non-coding upstream 237714 24751895 ~ 24753180 (+)
G52817 NA non-coding upstream 284988 24705538 ~ 24705906 (+)
G52756 NA non-coding upstream 600767 24387153 ~ 24390127 (+)
G52742 NA non-coding upstream 628627 24360806 ~ 24362267 (+)
LOC120558677 NA non-coding downstream 10434 25009989 ~ 25015398 (+)
G53056 NA non-coding downstream 810158 25809713 ~ 25811047 (+)
LOC120559215 NA non-coding downstream 995678 25995233 ~ 25997094 (+)
G53109 NA non-coding downstream 1096804 26096359 ~ 26099635 (+)
G53221 NA non-coding downstream 1325666 26325221 ~ 26325468 (+)
G52871 LOC104956590 other upstream 33564 24953442 ~ 24957330 (+)
LOC120559118 LOC102791662 other upstream 45574 24940795 ~ 24945320 (+)
ctnnbip1 ctnnbip1 other upstream 1176488 23791447 ~ 23814406 (+)
tmem201 tmem201,LOC102777799 other upstream 1225729 23746365 ~ 23765165 (+)
atxn7l2b kcnc4 other upstream 1922415 22991252 ~ 23068479 (+)
tprg1l tprg1l,LOC102784883,LOC106513028 other downstream 744034 25743589 ~ 25748321 (+)
G53096 ybx1 other downstream 1072030 26071585 ~ 26076664 (+)
G53232 LOC104966952,LOC103362776,LOC102800046,LOC102208894 other downstream 1352905 26352460 ~ 26353463 (+)
LOC120559113 LOC108236696,LOC104966950,LOC103362773,LOC103384494 other downstream 1378637 26378192 ~ 26383047 (+)
atp5f1e NA other downstream 1443495 26443050 ~ 26444890 (+)

Expression



Co-expression Network