plod1a


Basic Information

Item Value
gene id plod1a
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 36903077 ~ 36952279 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799930.1
gagagagagagagaggggcacaaacagagagagggggCAGGCGTTGAAAGACGAGAAAAGTTCGCTGTCTCTTAAGGAATTGTACAGTTCCGTTAATACCGAAACTCGTGAAAGGATTTTAACTTTAACTGGCAAAAATGAGACTTTCGCCCTTTCTGTTGTTCCCAGGGATTTTTGTCTGTGCACTTTTCCCTTTGACAAACTGTGAAGAGCAGCAAATCCCTGAAGAGAAACTTCTAGTTGTGACAGTTGCAACCACAGAGACTGATGGCTTCAAGCGTTTCTTGGGGTCGGCTAAACACTTTAACTACACTGTCAAGGTTCTTGGTCGGGGCCAGAAATGGATGAGTGGCGACTACATGTCCGGTCCAGGAGGAGGCCAGAAAGTACGACTCCTTAAAGAGGCTCTGAAGGAGTTGAAGAATGAGGACAAAGTCATCCTTTTTATCGACAGCTACGATGTGGTTTTCGCCTCGGGTCCCAAAGAGCTGCTCAAGAAGTTCCAGCAGGCCAGACACAAAGTGGTGTTCTCCTCTGAGAGCCTGATCTGGCCCAACAGACACCTGGAGGACAAATACCCCCACGTCCTCGTTGGCAACAGGTTTCTAGGCTCAGGAGGTTTCATTGGCTACCTTCCCAACATCAAAGAAATGGTTGCTGACTGGACAGGAGAAGATAATGACAGCGACCAGCTGTTCTTCACCAAGATTTACATTGATCCAGTTAAAAGGaaatCCATAAATATCACACTGGACAGCAAATGCAGATTGTTCCAGAACCTTCATGGAGCCCTCGacGAGGTGGTGCTGAAGTTTGAGGATGGGCGGGTACGAGCCAGAAATGTGCTGTATGATACCCTGCCAGTCGTCATCCATGGGAACGGACCAACCAAGCTCCAGATCAACTACCTGGGTAACTACATCCCCAACACATGGACATTTGAGACAGGATGCACAGTGTGTCACGAGGACCTCAGCCCACTGACAGCTCTTAAGGAGAGTGAATACCCTCTGGTGGTCATTGGCGTCTTCATTCAGCAGCCCACCCCCTTTGTGACGATGTTCTTTGAACGCCTACTAAAGCTCCAGTACCCCAAAAACAGACTCAAACTCTTCATCTACAACCAGGAAGCTCATCATGAGCGTCACATCAGCTCTTTCCTGAAGGATCATGGGAGCCTTTATCAGGATGTCAAAGTCGTCGGGCCTGAAGAGGAGATGGACGAAGCTGCCTCCTGCAACATGGGCTTTGACATGTGCCGGAAGGACAAGGACTGTGACTATTTCTTCCTCTTGGACATTCAAGTGGTCTTAAAGAATGAGAACACACTTAAAATTCTCATTGAACAAAACCTGCCTATTGTGGCACCGATGATAACTCGAGTTGGTCGACTGTGGAGCAACTTCTGGGGAGCCCTGAGTGCAGAAGGCTACTACGCCCGGTCCGAGGACTACGTGGACATAGTTCAAGGACGCAGAGTGGGTGTGTGGAATGTCCCGTACGTGTCCAGCGTGTACCTGGTGAAGGCCAGCCTGCTTCGATCGGAGCTCGCAGACTACGAGCTGTTTAACTCAAACACCTTAGACCCCGACATGGCTTTCTGCCACAACATCCGCAACAAGggaatCTTCATGTACGTAACCAACATGCACACTTTCGGCCGCATCCTGTCAACAGACAACTATCAGACGAGCCATCTTCATAATGATCTGTGGCAGATCTTTGAAAACCCAGTGGACTGGCAGGAGCGCTACATTCATGAGAACTATACTTACATCATGAAAGACAAGCTGATTGAAAATCCTTGTCCCGATGTGTACTGGTTCCCAATTTTCTCTGATGTTGCTTGTAACCACATTGTTGAAGAAATGGAACATTATGGGAAATGGTCAGGAGGAGGCAATAAGGACACCAGAATCCAAGGTGGCTATGAGAATGTCCCCACTATCGATATCCACATGAATCAAATCAACTTTGAAAAGGAATGGCACAAGTTCTTACTGGAGTATATAGCACCGATAACGGAGAAAATGTATCCTGGTTACTACACCAAGTGTGCCTCTCCCCTGAACTTTGTGGTGAGGTACAAACCGGACGAGCAGCCCCTGCTCGCCCCTCACCACGACGCCTCCACATTCACTATTAACATAGCTCTCAACAGCAAAGACGTTGACTACCAGGGTGGAGGATGCCGGTTCCTCCGCTACGACTGCTCGGTCCAGGCTCCCCGTAAAGGCTGGAGCCTCATGCACCCGGGCCGCCTCACCCACTACCACGAAGGCCTGCCCACCACCGCCGGCGTGCGCTACATCGCCGTGTCCTTCGTGGATCCCTgaacgccccccccccctgaaGATGGCCTCACATCACCGGCGAGTCCAGACCAAacaggagagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagggctgcAGCTTTCAGCATCCCAACGCAGCTTCACCTTCTGATCTGGAGCGGTGACCAGCGCTCTTTCCATTAGTTCATTTCAGGGTTCATAAGCATTTTAACCATGActgtgtgtttctgaaaatgtcagtcgacattatacaataagaatacacatctgtgttaaagttcaccctcagaggtttaactataaaacacttattaatcacatattatt
>XM_039799932.1
tgagagagagagagaggggcacaaacagagagagggggCAGGCGTTGAAAGACGAGAAAAGTTCGCTGTCTCTTAAGGAATTGTACAGTTCCGTTAATACCGAAACTCGTGAAAGGATTTTAACTTTAACTGGCAAAAATGAGACTTTCGCCCTTTCTGTTGTTCCCAGGGATTTTTGTCTGTGCACTTTTCCCTTTGACAAACTGTGAAGAGCAGCAAATCCCTGAAGAGAAACTTCTAGTTGTGACAGTTGCAACCACAGAGACTGATGGCTTCAAGCGTTTCTTGGGGTCGGCTAAACACTTTAACTACACTGTCAAGGTTCTTGGTCGGGGCCAGAAATGGATGAGTGGCGACTACATGTCCGGTCCAGGAGGAGGCCAGAAAGTACGACTCCTTAAAGAGGCTCTGAAGGAGTTGAAGAATGAGGACAAAGTCATCCTTTTTATCGACAGCTACGATGTGGTTTTCGCCTCGGGTCCCAAAGAGCTGCTCAAGAAGTTCCAGCAGGCCAGACACAAAGTGGTGTTCTCCTCTGAGAGCCTGATCTGGCCCAACAGACACCTGGAGGACAAATACCCCCACGTCCTCGTTGGCAACAGGTTTCTAGGCTCAGGAGGTTTCATTGGCTACCTTCCCAACATCAAAGAAATGGTTGCTGACTGGACAGGAGAAGATAATGACAGCGACCAGCTGTTCTTCACCAAGATTTACATTGATCCAGTTAAAAGGaaatCCATAAATATCACACTGGACAGCAAATGCAGATTGTTCCAGAACCTTCATGGAGCCCTCGacGAGGTGGTGCTGAAGTTTGAGGATGGGCGGGTACGAGCCAGAAATGTGCTGTATGATACCCTGCCAGTCGTCATCCATGGGAACGGACCAACCAAGCTCCAGATCAACTACCTGGGTAACTACATCCCCAACACATGGACATTTGAGACAGGATGCACAGTGTGTCACGAGGACCTCAGCCCACTGACAGCTCTTAAGGAGAGTGAATACCCTCTGGTGGTCATTGGCGTCTTCATTCAGCAGCCCACCCCCTTTGTGACGATGTTCTTTGAACGCCTACTAAAGCTCCAGTACCCCAAAAACAGACTCAAACTCTTCATCTACAACCAGGAAGCTCATCATGAGCGTCACATCAGCTCTTTCCTGAAGGATCATGGGAGCCTTTATCAGGATGTCAAAGTCGTCGGGCCTGAAGAGGAGATGGACGAAGCTGCCTCCTGCAACATGGGCTTTGACATGTGCCGGAAGGACAAGGACTGTGACTATTTCTTCCTCTTGGACATTCAAGTGGTCTTAAAGAATGAGAACACACTTAAAATTCTCATTGAACAAAACCTGCCTATTGTGGCACCGATGATAACTCGAGTTGGTCGACTGTGGAGCAACTTCTGGGGAGCCCTGAGTGCAGAAGGCTACTACGCCCGGTCCGAGGACTACGTGGACATAGTTCAAGGACGCAGAGTGGGTGTGTGGAATGTCCCGTACGTGTCCAGCGTGTACCTGGTGAAGGCCAGCCTGCTTCGATCGGAGCTCGCAGACTACGAGCTGTTTAACTCAAACACCTTAGACCCCGACATGGCTTTCTGCCACAACATCCGCAACAAGggaatCTTCATGTACGTAACCAACATGCACACTTTCGGCCGCATCCTGTCAACAGACAACTATCAGACGAGCCATCTTCATAATGATCTGTGGCAGATCTTTGAAAACCCAGTGGACTGGCAGGAGCGCTACATTCATGAGAACTATACTTACATCATGAAAGACAAGCTGATTGAAAATCCTTGTCCCGATGTGTACTGGTTCCCAATTTTCTCTGATGTTGCTTGTAACCACATTGTTGAAGAAATGGAACATTATGGGAAATGGTCAGGAGGAGGCAATAAGGACACCAGAATCCAAGGTGGCTATGAGAATGTCCCCACTATCGATATCCACATGAATCAAATCAACTTTGAAAAGGAATGGCACAAGTTCTTACTGGAGTATATAGCACCGATAACGGAGAAAATGTATCCTGGTTACTACACCAAGgCTCAGTTTGAGTTGGCCTTTGTAGTTAGATATAAGCCAGACGAGCAGCCCTCTTTGAGACCGCACCATGATGCCTCCACTTTCACTATTAACATTGCGCTCAATCAAGTGGGCCCTGATTACCAGGGTGGAGGATGCCGGTTCCTCCGCTACGACTGCTCGGTCCAGGCTCCCCGTAAAGGCTGGAGCCTCATGCACCCGGGCCGCCTCACCCACTACCACGAAGGCCTGCCCACCACCGCCGGCGTGCGCTACATCGCCGTGTCCTTCGTGGATCCCTga
>XM_039799933.1
tgagagagagagagaggggcacaaacagagagagggggCAGGCGTTGAAAGACGAGAAAAGTTCGCTGTCTCTTAAGGAATTGTACAGTTCCGTTAATACCGAAACTCGTGAAAGGATTTTAACTTTAACTGGCAAAAATGAGACTTTCGCCCTTTCTGTTGTTCCCAGGGATTTTTGTCTGTGCACTTTTCCCTTTGACAAACTGTGAAGAGCAGCAAATCCCTGAAGAGAAACTTCTAGTTGTGACAGTTGCAACCACAGAGACTGATGGCTTCAAGCGTTTCTTGGGGTCGGCTAAACACTTTAACTACACTGTCAAGGTTCTTGGTCGGGGCCAGAAATGGATGAGTGGCGACTACATGTCCGGTCCAGGAGGAGGCCAGAAAGTACGACTCCTTAAAGAGGCTCTGAAGGAGTTGAAGAATGAGGACAAAGTCATCCTTTTTATCGACAGCTACGATGTGGTTTTCGCCTCGGGTCCCAAAGAGCTGCTCAAGAAGTTCCAGCAGGCCAGACACAAAGTGGTGTTCTCCTCTGAGAGCCTGATCTGGCCCAACAGACACCTGGAGGACAAATACCCCCACGTCCTCGTTGGCAACAGGTTTCTAGGCTCAGGAGGTTTCATTGGCTACCTTCCCAACATCAAAGAAATGGTTGCTGACTGGACAGGAGAAGATAATGACAGCGACCAGCTGTTCTTCACCAAGATTTACATTGATCCAGTTAAAAGGaaatCCATAAATATCACACTGGACAGCAAATGCAGATTGTTCCAGAACCTTCATGGAGCCCTCGacGAGGTGGTGCTGAAGTTTGAGGATGGGCGGGTACGAGCCAGAAATGTGCTGTATGATACCCTGCCAGTCGTCATCCATGGGAACGGACCAACCAAGCTCCAGATCAACTACCTGGGTAACTACATCCCCAACACATGGACATTTGAGACAGGATGCACAGTGTGTCACGAGGACCTCAGCCCACTGACAGCTCTTAAGGAGAGTGAATACCCTCTGGTGGTCATTGGCGTCTTCATTCAGCAGCCCACCCCCTTTGTGACGATGTTCTTTGAACGCCTACTAAAGCTCCAGTACCCCAAAAACAGACTCAAACTCTTCATCTACAACCAGGAAGCTCATCATGAGCGTCACATCAGCTCTTTCCTGAAGGATCATGGGAGCCTTTATCAGGATGTCAAAGTCGTCGGGCCTGAAGAGGAGATGGACGAAGCTGCCTCCTGCAACATGGGCTTTGACATGTGCCGGAAGGACAAGGACTGTGACTATTTCTTCCTCTTGGACATTCAAGTGGTCTTAAAGAATGAGAACACACTTAAAATTCTCATTGAACAAAACCTGCCTATTGTGGCACCGATGATAACTCGAGTTGGTCGACTGTGGAGCAACTTCTGGGGAGCCCTGAGTGCAGAAGGCTACTACGCCCGGTCCGAGGACTACGTGGACATAGTTCAAGGACGCAGAGTGGGTGTGTGGAATGTCCCGTACGTGTCCAGCGTGTACCTGGTGAAGGCCAGCCTGCTTCGATCGGAGCTCGCAGACTACGAGCTGTTTAACTCAAACACCTTAGACCCCGACATGGCTTTCTGCCACAACATCCGCAACAAGggaatCTTCATGTACGTAACCAACATGCACACTTTCGGCCGCATCCTGTCAACAGACAACTATCAGACGAGCCATCTTCATAATGATCTGTGGCAGATCTTTGAAAACCCAGTGGACTGGCAGGAGCGCTACATTCATGAGAACTATACTTACATCATGAAAGACAAGCTGATTGAAAATCCTTGTCCCGATGTGTACTGGTTCCCAATTTTCTCTGATGTTGCTTGTAACCACATTGTTGAAGAAATGGAACATTATGGGAAATGGTCAGGAGGAGGCAATAAGGACACCAGAATCCAAGGTGGCTATGAGAATGTCCCCACTATCGATATCCACATGAATCAAATCAACTTTGAAAAGGAATGGCACAAGTTCTTACTGGAGTATATAGCACCGATAACGGAGAAAATGTATCCTGGTTACTACACCAAGgCTCAGTTTGAGTTGGCCTTTGTAGTTAGATATAAGCCAGACGAGCAGCCCTCTTTGAGACCGCACCATGATGCCTCCACTTTCACTATTAACATTGCGCTCAATCAAGTGGGCCCTGATTACCAGGTCTACAAATGAACCCACACCGGAGCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K00473 PLOD1; procollagen-lysine,2-oxoglutarate 5-dioxygenase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799930.1 True 2673 mRNA 0.49 19 36916028 36952278
XM_039799932.1 False 2337 mRNA 0.49 19 36916365 36952279
XM_039799933.1 False 2208 mRNA 0.48 19 36903077 36952279

Neighbor

gene id symbol gene type direction distance location
gmeb2 gmeb2,LOC102776727 coding downstream 36775 36850850 ~ 36866302 (-)
stk35 LOC105921027,LOC108249422 coding downstream 98407 36780301 ~ 36804670 (-)
lrif1 NA coding downstream 277108 36610137 ~ 36625969 (-)
si:dkeyp-110g5.4 NA coding downstream 296309 36599573 ~ 36606768 (-)
igf3 LOC108228312 coding downstream 314365 36581523 ~ 36588712 (-)
LOC120559725 rpl22,LOC102779685,LOC106566811,LOC106572248,LOC100699599,LOC101484027,LOC102785448,LOC103376530,LOC102235575,LOC104936395 coding upstream 101508 37053787 ~ 37061695 (-)
tbc1d25 tbc1d25 coding upstream 204089 37156368 ~ 37172204 (-)
LOC120559612 LOC103363412,LOC108249421,LOC107391357 coding upstream 268255 37220534 ~ 37254041 (-)
mthfr mthfr coding upstream 345226 37297505 ~ 37329403 (-)
LOC120559054 NA coding upstream 1122138 38074417 ~ 38077028 (-)
G56213 NA non-coding downstream 23918 36870769 ~ 36879159 (-)
G56215 NA non-coding downstream 104881 36797443 ~ 36798196 (-)
G56197 NA non-coding downstream 144426 36757955 ~ 36758651 (-)
G56195 NA non-coding downstream 146606 36756213 ~ 36756471 (-)
G56191 NA non-coding downstream 150023 36752757 ~ 36753054 (-)
G56245 NA non-coding upstream 23315 36975594 ~ 36980336 (-)
G56250 NA non-coding upstream 72655 37024934 ~ 37025355 (-)
G56265 NA non-coding upstream 114386 37066665 ~ 37118456 (-)
G56279 NA non-coding upstream 150457 37102736 ~ 37118149 (-)
G56291 NA non-coding upstream 193055 37145334 ~ 37147442 (-)
rhoaa LOC106529366,LOC107558917,LOC102777028,LOC107687289,LOC103367639,LOC107599000,LOC103384870,LOC106572042 other downstream 7537 36884803 ~ 36895540 (-)
LOC120559655 mtch1,LOC102799640 other downstream 158945 36723238 ~ 36744132 (-)
G56160 NA other downstream 178868 36681899 ~ 36724209 (-)
LOC120559361 NA other downstream 343118 36557530 ~ 36559959 (-)
si:ch73-70k4.1 NA other downstream 1004341 35874622 ~ 35898736 (-)
phc2a LOC103367632,LOC102778931,LOC100708466,LOC102197996 other upstream 32606 36984885 ~ 37001151 (-)
G56335 NA other upstream 420356 37372635 ~ 37373316 (-)
G56376 NA other upstream 616781 37569060 ~ 37839849 (-)
LOC120559227 esd other upstream 929889 37882168 ~ 37900343 (-)
G56436 NA other upstream 973915 37926194 ~ 37940548 (-)

Expression


Co-expression Network