LOC120558833


Basic Information

Item Value
gene id LOC120558833
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 22538280 ~ 22545840 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800103.1
ATTTAAATCAATAGAATATTAGGCTTCTATTACGGTCTATGAATCACTCAGTTTTGAAGAAATGATGGATGGAAAGAAACTAAACTAACACTTAAGGATACTACATAGGAACAAAAACAAGTCAACAAGTACCTATTTTTTCCCCAGTTTTAAATAAGAGTGAGAGCCTGGCTTATTTCTTGTCTTATGTTAATGTATCCTGACAACACAATTGTGCTTTACCTTAAAAACATTAGGCATGTGGGTTTTCCCATTTTTCAGTAGTTTTAGCAAATGTGTGTTCTGCGGTTGACCATATTCCTAGCTTTTGTGACCAGAGTATTTAACATGAGATGGATGAAACAAGTTTTTTGTCCTACTTACCCTAGTTATTAGTATTGCTGCCTTGTATATTAATACTACTAAGATCAGCCCATCCCTGCTTCAGTGGCTTCTAAAGGTCTGAAATATTGACCAAATGGAGCCCTGTCTATGTTCTTGATACAGAATAATCCCtcaaattgtaattatttagGAACTAGAGATGTTTCTTGAAGTAATCAAACTTGTCTGGCCAATGCCGTCCTAGTGGTCTGGGGGTGGCCCAAAGCTGGTCTAATATTGTACTCATACTACTACATGGATAATATAAGAAGTAATAACATCCAGCTGACCTGATCAGTGGGAGAATACAGTAGTGTAATCGGTGAACACCATTGTACACCCCTTTGTGTCACATTTGTGTACAGTAAAGGTATATGCATCCACCAATCATTTTAAAGATATTAAAGTATCCCTGTGTCTTTGCAGTGTTTGGATTTAGTGCTGTGTATAGGTACATTTATTGGTACATTTGATTCATCACTTGGGACAACACcagcatttatttatatattatttaaagatAAAAACACTGCAACAGGTACAGCCACGGCTCCCCATGATCCTCTTGGGGCGGATGTCCTGCTCAGGTTTGACTGTCTTAATAGGATTATCTATTCTCAGTACAGGAGAAAGGCCAGGGGAGAAAAGAACCAAACGCGTTTAAGACCTTGTGAGAACGTATTTGTGTTTACAGCAACAATAAAAAATCCAGTGTTGACTGTGAAGAGGATTTGAAGACTTGATTCTGTTTTTTACCTGAGGAGGACATTTGGATTATTCTTTTGAAGACAGTAGTGATGAACGCCCAGCCTGTTGCCGAGACAACCAACTGCAGTCTGTCCACCATGCTGGGCAGTGAGGACAGTGACGAAGAAACCAGTCAAGAGGAGCCCTCAATCCCAAACTGGAACGAGCTGTCCATCATAGAACGTGTAGGCCTCAACAGCATGGAGATGTCAGAGAAAGATTTGGAGACGGCCTTCTGTCAGATCGCCCTGGCCTTCCGCTGTGATCAGTACACCCTGAAGCAGAGGCTGCAGGCGGAGGAGCACGCCCGCAACCTGGCTGAGGAGAACATCCAGCTGGAGCTGACCAGAGGCAGGGAGACCCTGGAGaCGCTGAAAGGCCTGTGTCTGGACAGTAAGCGCAGTATGATCCTGCAGAGGCTGGAGCTGTCTCTCGACATCCTCGGTGGGACCGTGGAACGAATCTCCAACACAGCGGAGGTGCTCGGCGCTGTGCACCAGGAGGCTAGAGTGAGTCATGAAGTCGAACTGATGGTTGCTCATGTGGAGAATCTGAGGAGACAACATGAGAGAAACGTGCTAGAGCTGGAGGAGGCCAAGAAGACGATCCAGCAGCAAAAGAGCATCGACCAAAGAGCATCGCCAGATCCAGAGGAAAGTGACATCAGAAAGAAAAGCTCTCATCAGagCCTTCGTCGCAGAGTCAGCATAACACTTATTCCCAGCCAAATCCAGGAGAAGATAAAGCAAGACTTAAAGAAACAAGCTACTCCCAGAAGGTCCTTCAGCAAAGAATCCTTCCTCACCTGTCCGTCTCCCCCCCTGAGATCAGAGTCCAGCTGCTCTGTGACCAATGACAACAGCTTCTCAGTGGATGACAGgccACTGGATCCAGATGACACTCCATCAGAAGCTCCAGCTGCTGAGCTTCCTTCACCTCCCATCCCCAAATCAGAGTACCTCCCATCGAAACAACTGGCCACCAGAAAGATACACAACAAAAAATCCCCTCTGGAGACTTTGCGGCAGAGACACAAGGGCAAAGCTGCGTTATCAAAGAAAAAGGCAGACAAGGATAAAAAAAGTGCAAATATTTACCGACAGCTTTCTGCAATCCCGTGTGGGTCCTTGTGGAGACATCGTCCTCTGGCTCACTGGTTGTATCGCTGTCGCTGGGCGCTCTTCTGCGTGTACCTGTTGGTGCTTTTCTGTGTCCTAACATTGGCTTACCTTTTTGTGGAAGCTTCATGATGGGACCACCTGGGCCATGGACATACAGTCAGCAGGACGTTGTCTAAATTCTGTGACTGTATTGCAAACATGAAGGGTGCAGACAGCTGAAACACCTGTATCAGTCTTTGGAtatgaatataaaaacattttaggaCA

Function

GO: NA

KEGG:

id description
ko00190 Oxidative phosphorylation

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800103.1 True 2498 mRNA 0.45 13 22538280 22545840

Neighbor

gene id symbol gene type direction distance location
rpl10a rpl10a,LOC103141192 coding upstream 127 22535497 ~ 22538153 (+)
fance NA coding upstream 3675 22530906 ~ 22534605 (+)
mkrn4 NA coding upstream 7574 22525297 ~ 22530706 (+)
ppardb ppard coding upstream 13340 22517239 ~ 22524940 (+)
LOC120559492 def6 coding upstream 22734 22501456 ~ 22515546 (+)
smc5 smc5 coding downstream 20104 22565944 ~ 22581585 (+)
elapor1 kiaa1324 coding downstream 39591 22585431 ~ 22596202 (+)
mapk14a LOC103368176,LOC104964410,LOC104939458 coding downstream 51384 22597224 ~ 22610796 (+)
srpk1a srpk1 coding downstream 66130 22611970 ~ 22627159 (+)
cpne5a NA coding downstream 107661 22653501 ~ 22725592 (+)
G52185 NA non-coding upstream 54179 22480543 ~ 22484101 (+)
G52179 NA non-coding upstream 61966 22474230 ~ 22476314 (+)
G52054 NA non-coding upstream 191634 22340383 ~ 22346646 (+)
G52064 NA non-coding upstream 283307 22254295 ~ 22254973 (+)
G52060 LOC104967533,LOC103368342 non-coding upstream 301098 22235156 ~ 22237182 (+)
G52272 lhfpl5,LOC102777996 non-coding downstream 84754 22630594 ~ 22631144 (+)
G52287 NA non-coding downstream 180033 22725873 ~ 22726131 (+)
G52288 NA non-coding downstream 180757 22726597 ~ 22729555 (+)
G52294 NA non-coding downstream 204223 22750063 ~ 22762554 (+)
G52333 NA non-coding downstream 288958 22834798 ~ 22847296 (+)
LOC120558641 LOC103363734,LOC104967523 other upstream 443390 22090197 ~ 22094890 (+)
avpr2aa avpr2,LOC105897269 other upstream 477635 22046763 ~ 22060645 (+)
G51926 NA other upstream 634203 21903542 ~ 21904077 (+)
LOC120559721 cacna1s,LOC103368470 other upstream 730366 21783217 ~ 21807914 (+)
birc5b LOC107086758,LOC102206178,LOC102295711,LOC100709346,LOC106950807,LOC103141143,LOC106920826 other upstream 818157 21717109 ~ 21720123 (+)
G52210 LOC104964406,LOC106525460,LOC105931770 other downstream 10489 22556329 ~ 22560328 (+)
LOC120559933 NA other downstream 16314 22562154 ~ 22562521 (+)
lamtor5 lamtor5,LOC102787529 other downstream 296204 22842044 ~ 22846938 (+)
atxn7l2b kcnc4 other downstream 445412 22991252 ~ 23068479 (+)
tmem201 tmem201,LOC102777799 other downstream 1200525 23746365 ~ 23765165 (+)

Expression


Co-expression Network