dffb (dffb)


Basic Information

Item Value
gene id dffb
gene name dffb
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 28510901 ~ 28517962 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800118.1
ACAAACCAAACCGTACAGACTCAAAACAGTGCAATGTTTGGCCTCTTCGGGAAAAACAAACCTGTGAAAATTAGGAGTTGTAATGAAAGCATAAAGTTCGGAGTTGCAGCAAAAGATGTGAAGGAGTTGCTTAAAAAAGGCTGCAAGTTATTACAGTTGCCATCTTCTGGTGcacatgtttgtttgtatgcGGATGGGACAAAGGTGACAGAGGAATTCTTCCCCACTCTGCCGGACAACACAGAACTTGTTCTTCTCTGCAGAGATCAGACATGGAGTGGAGTTGTGTGTGACATCGGCCAGTTACTGAGCACAGACCGGCACGCCGCTGGCCTCGTTGAAGCCGCGAGAGGGCTCCTGTCTGATGAGCAGTCTCCTAAAAGGCGTAAAATCCTGACTGACCTGCTGCTCAACCTGGAGGACAGATCTGAGCtggagagcagagaggaggatgaagactGGTTCAAAGgTATTGATGCTCGATTCAAGACAAAGTCGGCCTACATGAAGTTCAACTGTGAGAGCAGGATACGAGGCTACATGAAGGAGGTGGATGGTGCCTCCAAATCCATACAGAATGCCAAAGTCAGGGATGAGTTTCTGAAAGCATCCAAATCCCTGGCGGAAACGCTGAAGGCAGCAAGGCACAACGGCTGCTACTTTGACAGGAGCGAAAAGGAACCAAATCGCCTCTGTACTCGGGAAGGATGGTTTACCTGCCAGGGATCATTTGAGCAGCAAGTGTGCCAGTCTCTCCACTCCATCAACCCCTACGGCAGCCGAGAGAGCAGGATTGTCTTCAGCACATGGAATCTGGACCACAGGATAGAAAAGAAGAGGACGGTCATTCCCGCTCTGCTGGAAGCTCTACAGAATCACAAGAGCACCGACGTCAACCTGAACTACTTCTACTGCTTGCTGTTCACCAGGGAAAACCTGAAACTGGTTCACATCGTGTGCCACAAGAAAGGAGCTCACAACCTGCTGTGTGACACCAAGAAGATTTTTAGACAAGCCGCgaacacacacaaagcaaaacAGAAGCTCAAAGGGAAGAAGAGGCGCTTGATGTGAATATTTTTGACTCTGCTTTTATGAAATGTATTGATTTGTATGAACTGCGACGCCATAATTACACAGATTACATTCTGTGAAGAATTTTCTCAAAAGGTTACTGTAGCGAGATCAGATGGAC
>XM_039800119.1
ACAAACCAAACCGTACAGACTCAAAACAGTGCAATGTTTGGCCTCTTCGGGAAAAACAAACCTGTGAAAATTAGGAGTTGTAATGAAAGCATAAAGTTCGGAGTTGCAGCAAAAGATGTGAAGGAGTTGCTTAAAAAAGGCTGCAAGTTATTACAGTTGCCATCTTCTGGTGcacatgtttgtttgtatgcGGATGGGACAAAGGTGACAGAGGAATTCTTCCCCACTCTGCCGGACAACACAGAACTTGTTCTTCTCTGCAGAGATCAGACATGGAGTGGAGTTGTGTGTGACATCGGCCAGTTACTGAGCACAGACCGGCACGCCGCTGGCCTCGTTGAAGCCGCGAGAGGGCTCCTGTCTGATGAGCAGTCTCCTAAAAGGCGTAAAATCCTGACTGACCTGCTGCTCAACCTGGAGGACAGATCTGAGCtggagagcagagaggaggatgaagactGGTTCAAAGgTATTGATGCTCGATTCAAGACAAAGTCGGCCTACATGAAGTTCAACTGTGAGAGCAGGATACGAGGCTACATGAAGGAGGTGGATGGTGCCTCCAAATCCATACAGAATGCCAAAGTCAGGGATGAGTTTCTGAAAGCATCCAAATCCCTGGCGGAAACGCTGAAGGCAGCAAGGCACAACGGCTGCTACTTTGACAGGAGCGAAAAGGAACCAAATCGCCTCTGTACTCGGGAAGGATGGTTTACCTGCCAGAAAGAACTGGGCCTCGTGTTTTCACCTCTTCTTCTCGGTTGCCTCCTCAGGGATCATTTGAGCAGCAAGTGTGCCAGTCTCTCCACTCCATCAACCCCTACGGCAGCCGAGAGAGCAGGATTGTCTTCAGCACATGGAATCTGGACCACAGGATAGAAAAGAAGAGGACGGTCATTCCCGCTCTGCTGGAAGCTCTACAGAATCACAAGAGCACCGACGTCAACCTGAACTACTTCTACTGCTTGCTGTTCACCAGGGAAAACCTGAAACTGGTTCACATCG

Function

symbol description
dffb Predicted to enable deoxyribonuclease activity. Predicted to be involved in apoptotic DNA fragmentation. Predicted to act upstream of or within apoptotic process. Predicted to be located in cytoplasm and nucleus. Orthologous to human DFFB (DNA fragmentation factor subunit beta).

NR:

description
DNA fragmentation factor subunit beta-like isoform X2

GO:

id name namespace
GO:0006309 apoptotic DNA fragmentation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K02311 DFFB, DFF40; DNA fragmentation factor, 40 kD, beta subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800118.1 True 1195 mRNA 0.48 7 28510901 28517962
XM_039800119.1 False 1005 mRNA 0.50 7 28511141 28517962

Neighbor

gene id symbol gene type direction distance location
b3gnt7l LOC103356136,LOC104946517,LOC101486029 coding downstream 7996 28500573 ~ 28502905 (-)
LOC120558751 lrrc47 coding downstream 52330 28454908 ~ 28458571 (-)
LOC120558756 lrrc47 coding downstream 71873 28435512 ~ 28439028 (-)
LOC120558755 lrrc47,LOC102780667 coding downstream 109052 28400147 ~ 28401849 (-)
LOC120559481 dnajc16 coding downstream 191393 28313069 ~ 28319508 (-)
LOC120559029 LOC102787320,LOC102195592,LOC100705795,LOC102314501 coding upstream 632441 29150403 ~ 29154225 (-)
gabrd gabrd,LOC102778860 coding upstream 640067 29158029 ~ 29180691 (-)
LOC120559893 LOC104921444,LOC103367276,LOC104966657,LOC106952640,LOC103151253,LOC106934176 coding upstream 805903 29323865 ~ 29337598 (-)
LOC120559132 LOC102197101,LOC101463906,LOC102310392,LOC100702039 coding upstream 1075086 29593048 ~ 29609420 (-)
ttll10 NA coding upstream 1091947 29609909 ~ 29650365 (-)
G53800 NA non-coding downstream 62695 28365496 ~ 28448206 (-)
G53799 NA non-coding downstream 87533 28343661 ~ 28423368 (-)
G53806 NA non-coding downstream 134489 28376075 ~ 28376412 (-)
G53768 LOC107716147,LOC107737696,LOC104954971 non-coding downstream 188696 28321726 ~ 28322205 (-)
G53736 NA non-coding downstream 312183 28198452 ~ 28198718 (-)
G53851 NA non-coding upstream 90307 28608269 ~ 28608574 (-)
G53881 NA non-coding upstream 403469 28921431 ~ 28921641 (-)
G53886 NA non-coding upstream 446681 28964643 ~ 28968075 (-)
LOC120559849 NA non-coding upstream 532550 29050512 ~ 29067899 (-)
G53972 gnb1,gnb1b,LOC107385217,LOC103044197,LOC106516123,LOC107666091 non-coding upstream 733001 29250963 ~ 29294161 (-)
LOC120559779 LOC104918355,LOC103374204,LOC103385013 other downstream 324374 28153182 ~ 28186527 (-)
LOC120558759 NA other downstream 580386 27845264 ~ 27930515 (-)
xpc xpc other downstream 850255 27644783 ~ 27660646 (-)
hyal3 LOC103359396 other downstream 1310990 27189048 ~ 27199911 (-)
ifrd2 ifrd2,LOC104928016,LOC104966933 other downstream 1339669 27157588 ~ 27171232 (-)
ajap1 ajap1 other upstream 453324 28971286 ~ 29029321 (-)
LOC120559896 slc25a45 other upstream 832116 29350078 ~ 29355884 (-)
clcnk clcnka,LOC104952128,LOC102786725 other upstream 956541 29474503 ~ 29492975 (-)
cdk11b LOC103366252,LOC101466870,LOC100697195 other upstream 1234699 29752661 ~ 29765873 (-)
tafa5l LOC102786421,LOC104919510,LOC100700110,LOC103384901,LOC106518908,LOC107086703 other upstream 1453234 29971196 ~ 30072699 (-)

Expression


Co-expression Network