LOC120558856 (slc6a8,LOC100704248,LOC102310663)


Basic Information

Item Value
gene id LOC120558856
gene name slc6a8,LOC100704248,LOC102310663
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 39333262 ~ 39348187 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800156.1
gTCCGGGTCTGGCCTTCATTGCGTATCCGAAGGCTGTCAGTCTGATGCCGGTGGCTCCGCTGTGGGCGGCGCTCTTCTTcttcatgctgctgctgctcggaCTGGACAGTCAGtttGTCGGGGTGGAGGGTTTTGTTACTGGAATCCTGGATGTGTTTCCTGGAAAGCAGAACTTTCGCTACAAACGGGAGATCTCGGTGGCGATATGCTGCTTACTGTGCTTCATTATCGACCTCTCCATGGTGACGCAgggagGGATGTACGTCTTCCAATTGTTTGACTACTACTCGGCCAGTGGAATGACTCTGTTGTGGCAAGCATTCTGGGAATGCATAGTAGTTGCCTGGGTCTACgGTGCTGACCGCTTCATGGACGATGTAGCTCGTATGATTGGCTACCGGCCTTTCCCCTGGATGAAGTGGTGCTGGTCCTTTATAACTCCATGTGTCTGCATGGGCATCTTCCTGTTCCACCTGGTGAACTACAAGCCGCTGACCTACAACAACGTGTACGTGTACCCGTGGTGGGGCGAGGTGATTGGCTGGTGTCTGGCTCTGTCCTCCATGCTCTGCATCCCCGTCACCCTTCTCTACAAACTCTTCAGAGCCAAGGGAACCTTCAAAGAGCGCTGGGCTCACCTCACCTGTCCGGTGTGGGGGCCACATCACCTGGAGTACATGGCCCCCGACATCAAGTCCCTCAGCTCGCTGTCGCCCGGCACCGACGACAACAAAGTCATCATCTTTGAGAGCGTCATGTAGGCTGGACTCCACCAATCACAATGCtccatctccatccatccatcccaccTGCGACAAGATGCCCTGCAACACCTAACCACCACACTTCAGATTTACctccagggttcaaaattagcaccatttaccATTTGCcaaaatgctggtaaaatatgcaagtggctggtagctTTGCTTCACTCACCGGCCCAAAAAAAAACCAATGGTAATCTACTGTGTGGCTGGTGAAATTTGAACTTTCACTAGCCGTTTGGCTAGTGGACAAAAaggttaattttgaaccctgtttTACCTCCGTACCGGACCTCAGCGTGACGGATCAGCCCCTCAGCTCATCAAAACATCACCAAAGCTACCGAGATGTTTAAGAGAATCAAACAGCTCCTCCAGGACGGTTTTTATATCTAATAAATCCCAGCAGTAACAAATGAAAATCCTACTTtttcacccagaaaaaaaacacaaaaatgtgaGATTAAAAACCAGCAGATCACTCGGTTCTTTAACTGGAAAAGGGCTTCGACTCCTCTGGTTCTCaatacagaaaaagaaaatgtaaatattattttttttcacaaatgtcAAAAccctggaggagctgaagaagaagaagtttggACAGATTTCGTTCAAAACGCTGCTGAACGTTGGGCTTTCTCCATGTTGGATGAAGAGTATTAATGCAATCTTGTCTTTGGGTGGGCGggttggacacacacacacacacacacacacacacacacacacacacacacacacacacaacctcattaagtacgtttacatgcataCTAATATTCCACTTTTTTTCCGAGTTTGATGCAGGCcttgtaaacagcatattctgtttGGATATTTAGAATAAGATCTTTTTCCATATACAGCATTTTcagacttaacccttgtgttgtccttgggtcaaatttgaccctttttcaaagtttttataacagaaatatgggtttctttgaaccaaaatgtccaaaaataacatggatgcatggatgtactCTTTGCACATAAAAGGAATgattacttttattgaa

Function

symbol description
slc6a8 Predicted to enable symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including digestive system; eye; heart; optic vesicle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in creatine transporter deficiency and intellectual disability. Orthologous to human SLC6A8 (solute carrier family 6 member 8).

NR:

description
PREDICTED: sodium- and chloride-dependent creatine transporter 1 isoform X2

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800156.1 True 1804 mRNA 0.46 6 39333262 39348187

Neighbor

gene id symbol gene type direction distance location
LOC120558637 syp,LOC103367257,LOC102314167,LOC102203308 coding downstream 765627 38538673 ~ 38567635 (-)
pcsk1nl NA coding downstream 802199 38508492 ~ 38531063 (-)
LOC120559059 LOC103370165 coding downstream 980709 38343487 ~ 38352553 (-)
LOC120559058 NA coding downstream 996356 38329266 ~ 38336906 (-)
LOC120559803 LOC102788279,LOC102300940,LOC107099231,LOC104961425 coding downstream 1127171 38193260 ~ 38206091 (-)
gripap1 gripap1 coding upstream 691798 40039985 ~ 40132853 (-)
LOC120558739 NA coding upstream 903369 40251556 ~ 40254265 (-)
LOC120559070 NA coding upstream 1187885 40536072 ~ 40566494 (-)
LOC120559367 NA coding upstream 1232484 40580671 ~ 40594368 (-)
LOC120559370 NA coding upstream 1250618 40598805 ~ 40602090 (-)
G56597 NA non-coding downstream 9948 39321480 ~ 39323314 (-)
G56613 bcap31 non-coding downstream 23232 39293636 ~ 39310030 (-)
G56709 NA non-coding downstream 24645 39308140 ~ 39308617 (-)
G56620 NA non-coding downstream 29364 39251592 ~ 39303898 (-)
G56707 NA non-coding downstream 45136 39282015 ~ 39288126 (-)
G56717 NA non-coding upstream 7947 39356134 ~ 39477920 (-)
G56722 NA non-coding upstream 83161 39431348 ~ 39431816 (-)
G56734 NA non-coding upstream 85049 39433236 ~ 39751148 (-)
G56739 NA non-coding upstream 147087 39495274 ~ 39496157 (-)
G56741 NA non-coding upstream 167105 39515292 ~ 39516088 (-)
G56599 NA other downstream 90524 39237644 ~ 39242738 (-)
G56598 pim2,LOC105920369,LOC106942189,LOC106931484,LOC104956371 other downstream 130836 39113695 ~ 39202426 (-)
LOC120558774 NA other downstream 376062 38955404 ~ 38957200 (-)
LOC120558769 NA other downstream 416902 38913720 ~ 38916360 (-)
G56645 NA other downstream 430294 38902484 ~ 38902968 (-)
G56718 NA other upstream 41337 39389524 ~ 39513280 (-)
plxna3 plxna3,LOC101485239,LOC102288896 other upstream 118039 39466226 ~ 39628477 (-)
G56721 NA other upstream 202311 39550498 ~ 39614237 (-)
LOC120559369 NA other upstream 1312622 40660809 ~ 40669343 (-)
G57041 NA other upstream 1485911 40834098 ~ 40903924 (-)

Expression


Co-expression Network