cntn3a.1


Basic Information

Item Value
gene id cntn3a.1
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 24559407 ~ 24630995 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800278.1
gatgCCCCATGTGCCACTGCCGCCGCGCGCGCAGCCAACTACAGTCCTCATTCTGTGGACACGCTCAAACTGAACACCGCCGTCGTCAACCAGACCGTGAGCACTTTCTGCTCCTAAAATGAATTCATTCAGCGACATTTAAACACCTTCACACCGCAGACATTGTTGTTGGAAGCCACCACGGCTGCGGGTTTCGTTCGTATATCAGCCTGGCGGCGGTGCGGGCAGGGACTGCCTGCCTGCCCTAAATTAATGTGCCGGGATCTGGAGAATGGAAAGCGGACGACCCGGGCTGCTAGCAACTACTCGGACTCTGAAAATAGCGAAGACACCTGGGAGGAGTGAACGGCAGCGTTTAGGGTAACCTGCCTCCCCCGCAGAGGCGAGAAGAGAGTTGTTTGGCCATTTCTACGAGAGCAACACTTTGAAGACGAACTTCCCAGTCGCCGTCGACTCGATGCTGTCCGGGAGCTGCTGGGCTGGAGGAGTGAGGAGATGCGCGGTGTAACATGGATATCCGAGAAGGGATACACATCAGGAAGCATCGCAGGGGACGTACTCAGAAGAATGGTGAAATTGCTGTAAAGGACAAAGCCAAGATTCTACGCACCTGTGATTTGATGTGAGCTGGTATTGACCTGAGACCATTAAAATGGAGTTGCTATGGAAACTTATACTTCTGCTGTCATTGGTGGAGTGTCTGGAAGGAAGCGGAGTCCTGCTGAGGCCTGAGTTCACCAAACAACCCGGCAGTGTGGTGTTTCCCCTTCAACCTGGCGAGAACCGCAGAGAGGTGGTGTTTAGCTGTGAGGCTCAAGGACATCCACCGCCCTTTTACAGGTGGAAGCTCAATGACTCTTTCATCCTGCCCAGACCAGGGTCCCACTACTCTCTTATGGGAGGAAACTTACGCATCAGCCATCTGAATAAAGAGGAAGATGTTGGCATCTATCAGTGCCTGGCATCAAACTCTTTTGGCACCATCGTCAGCAGAGAGGCCAGTCTGCACATAGCATATTTGGAGAACTTCAAGACCCAGAGAAGAAGTCCAGTGAGGGTCCGTGAAGGTCAAGGAGTGGTCCTACTGTGTGGCCCACCACCCCACACTGGAGAACTTACCTTCACATGGATCTTCAACGAGTACCCATCGTTTGTCATACAGGACACGCGACGATTTGTGTCCCAGAAGACAGGTAACCTCTACATCGCCAAAGTGGAACCCTCAGATGTGGGCAACTACACTTGTGTAGTTACCAACACGGTCACCAAAAGCAGTGTTCAAGGACCACCAACTCCTCTAGTGCTGCGGGTTGATGGTGTGATGGGCGAATACGAGCCAAAGATCGAAGTGCAGTTCCCTGAAGTTGTCCCTGTTGCTAAGAGCTCAACTGTCAAACTGGAATGTTTTGCACTAGGAAACCCAGTGCCAACCATCAGCTGGAGAAGAGCAGACGGAGCCTCTTTTGGCAGGAAGGTGGACATAAATAAAGCCAGCGGAGTTTTAGAAATCCCTTACTTCCAGCAGGAGGATGCGGGAGTATATGAATGTGTGGCTGAAAACACCAGAGGAAGAAACTCTGCTAAAGGAAAACTGTCTTTCTATGCTGCACCTCACTTGACTGAGAAGCCTCAAGATGTTCAGAAGACCATTGATGATACTCTGGTGTGGGAGTGCAAAGCCAGCGCCAAGCCCAAACCTTCATACCTCTGGCTGAAGAATGGAGAGCCTCTGGACCCCATGGAGCATGATAGGGTTCAGGCGAATAATGGAGTGCTGACGATCAGTAGCTTGAATCTGGCGGACATCGGCATGTACCAGTGCGTGGCAGAGAACAAGCATGGCCGAATCTTCACCAACGCCGAGCTCCGAGTCATAGCCATCGCTCCAGACTTCTCCCAGAACTTGTTGAAGGCCCAAACTCTGGCCCGACAGGGTGGCGACATTCTGATCGAATGCAAGCCCAAGATGTCTCCCCGGGGTGTGATTTCTTGGAGGAAGGGGAAGGAAGCCCTAAGAGAGAACCACAGAGTTACTGTGTTGGATAATGGCAGCCTACGGATTTCCAATGTTACTAAAATGGATGCTGGACTCTACACATGTGTAGCCAGAAACCAGTTTGGAGTAGCCAGCAGTGCTGGCAGCCTATTGGTTAAAGAGCCAACTTTGATCACCAGTCCAGCAGGTCACCTGGACGTAACCGTAGGTGAGAGCATTGTGCTGCCCTGCCAAGTGTCTCATGACCCCACACTGGACCTCAAGTTCACCTGGTTCTTCAACGAGCAGCTCATCCACTTTGGAAGCTACTGGGCGTACTTTGAAAAAGTTGGTGGGCGCTCAGCTGGAGACATCATGATCCGGAACATTCAACTGAGGCATGCTGGGAAATATACATGTGCCGTTCAGACCAAGGTGGACAGTGTGTCTATTGCCACTGATGTGGTAGTCAGAGGTCCCCCAGGCCCCCCTGTGGACTGTCAGGTGACTGATATGACAGAGACCACTGCTTCTCTGTCCTGGGGACCGGGGATGGACAACCACAGCCCCATCCTCAGCTACACCATCCAGGCCAGAACACCCTTCTCTCTCGGGTGGCAAGCTGTAACCACCGTTCCAGAGCTGCTCGGGGGAAAGCAGCTGTCATCCACTGTCATTGACTTGAGTCCCTGGGTGGAGTACGAGTTCAGAGTCCTGGCAACCAACAGCATAGGAACAGGAGAGCCCAGCAAACCTTCCAAAAAGGCCCGCACCAAAGAAATGCTTCCCAGGGTGACTCCGGCCAGAGTGAACGGTGGTGGTGGAGGACGTTCAGAGCTGGTCATCACGTGGGAGCCTGTTCCTGAGGAGCTGCAGAGCGGTCCGGGCTTTGGCTACGTGGTGGCTTTCCGCCCACTCGGGGCGCAGGGCTGGATGCAGGCTGCTGTCACCTCCCCGGATGCCTCTAGATATGTCTTCAAGAATGAGAGCATCCCTCCCTTCTCCCCTTACCAAGTCAAAGTGGGGGTTTACAACAACAGAGGAGAAGGCCCTTTTAGTCCAGTGACCACCATCTACTCAGCAGAGGAAGAACCCAGCAGAGCTCCAGGGAGGCTGAGGGCAAAGAGTGTGTCAGCGTCCGAGGTGGAGGTCACCTGGAAGCCGCTGGCCTGGAGCAACAACCGCAGACGCATCCTGGGCTATGAGTTGCAGTACTGGGGTGAGAGGACTAAACAGGACACAGCCAGTGTGATCAGGACAGTAGGGAATAAAACGTCAGTACTCATCAGGGATCTGGAGGGCAGAAGCACCTATCACATGTCCCTGCGGGCCTATAACAGTGCTGGAGTTGGTCCACAGAGCATCATAGTCAATGTCACAACCAAGAAACCACCACCCAGTCAAGCCCCGGTCAAAATCATGTGGAACACTTCCAACTCCAAGGTCATCCTGAGGTGGGACCAAGTGCACGCTCTGGAGAATGAGTCAGAAGTCACAGGATATAAGGTGATGTACAGCCAGGACAAAAACAGCCGTCCCAGTGTGGTGGAGACCAACACCACCTCCTTGGAGTTGTCACTGCCGGTCAACCAGGACTATGTTATCCAGATTAAACCCTTTAGTGAGGGAGGggaaggcagcagcagcagccagatTACCATCCCCAAGATGGCAGgCTTCATAGCCACGGGAGCAGCCCCAGAGTCTTCTGCATTTCCCTTGGTCAAGCTCGCAGCGTTAATCCTCACAGCCAGGACTGTACTATGACAAACATCTGCATCAACCAGGCGCTACAGCTGCTTATTAAGAGGAGAAACAGCTGGTCAGAGACAACAAGAGACTGACAGCCGCATTTCCACCTGCTCCCTCCCCTACTGggtcttttctcttctttctacAAAGATCTTTGAGAGGAAATTTTTTTCCCTCCACCTTTTAAAAGGAATTGAAAGGAACTGGCTTTTTCAGTAGTTGCTTTTCTGGAAGTGAAAGGACACCGTGACTCGACTGCAGTCTCTTTGAAGAGGTTTCTTTCTTTGCTCCCTTCTAACCAGTGGATATTCTCATATGGTTTTAAGCTTGAAGGCCCAGTGGTGTGTGATGCACAATGTATTTTTCTGTGGGACTGTGCAGGTTCGGTTAAACGGATATTGTATGTACCTCTGGACTATTCTTGGATGCTGGGATTAGAACTGGGGATGGAGGAGACCTTACATAGCTCATTATAATGTGAGTgaagttatattttaactcaGTTTAAGACAAGAAAAGttttttccctcttctctttggGAAACTTGCTGCATTGTCTAAGAAGAAAAACCAACTGTTACTTATCCCTGCCAAAAACAGGGAGCTAAGTCTCATTGCTTGATGACAAACCAACCATTTGGGACCTTTGTAACTTTGCCTGGATTTTATTCATGCTTTTACGTTACACCACATTACATCGAAACCTCAAGAGTTGCCATGAAACTGACTTTAACCAAAGGTATTGAGCCAACAAGGTTCAGTTCCACCTGTTGTATCATTGTGAAAAAATGCAGTGTGTACACCCTCTATATGGCTTCCGTTGTAAACAGCAGACTTGTGTTGATTAATTGTTGTCTTACCTTCCTCCTTCACCCATGATAAGTGTGTAACAAAGGCACGCTGAGCCGCATTGGTGTACACTGTATGTATGAAATCCTCAGGTCCCAAATGAGCCTTAAAGTCTTATGATTATTATCCATGTTGTTATTATTCAAGTTATTTATTTTCCTCCTCTGTTTATCCGCATTTTATTTTGGCTCACTCATACCGTAATTTATGAATAACTGATCTTACTGTACGCTGTATGTTGAGATTCTtcacttttgttcatttttagaTCATATTTTTGGGGCGTTTTGGGCTCAGAAACATGCCTTTCTCCTATGTCTTTCATAATGAGCATTGTAATACAGTACAAGTGGCAGTAATTACTGACTTTTCTATCATAGCTTATTACAAAGTAGGGATGGTATTTTACTgtcagctgctgtttggcatGAGATTGGTCAGTGTACGTACCTACGTTGCTTAGGATGTCTGAATGGATCAACCTGCTTTTAATAAACATAATGCCGTTTTCctca

Function

NR:

description
contactin-4-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800278.1 True 5091 mRNA 0.50 23 24559407 24630995

Neighbor

gene id symbol gene type direction distance location
LOC120559012 NA coding upstream 62256 24442888 ~ 24497151 (+)
dffa dffa coding upstream 225340 24325261 ~ 24334067 (+)
casz1 casz1 coding upstream 305620 24204375 ~ 24253787 (+)
c5h1orf127 LOC104954118 coding upstream 538483 24013889 ~ 24020924 (+)
pgd pgd coding upstream 557971 23994946 ~ 24001436 (+)
ttll9 ttll9 coding downstream 79788 24710783 ~ 24715633 (+)
ppp1r3da ppp1r3d,LOC104919428,LOC100701819 coding downstream 88780 24719775 ~ 24721848 (+)
sycp2 NA coding downstream 91294 24722289 ~ 24750342 (+)
pigt pigt,LOC102793327 coding downstream 154968 24785963 ~ 24793102 (+)
LOC120559115 LOC104919424,LOC101480694 coding downstream 207589 24838584 ~ 24919766 (+)
G52756 NA non-coding upstream 169280 24387153 ~ 24390127 (+)
G52742 NA non-coding upstream 197140 24360806 ~ 24362267 (+)
G52728 NA non-coding upstream 285371 24270121 ~ 24274036 (+)
LOC120558580 NA non-coding upstream 485399 24061063 ~ 24074008 (+)
G52629 NA non-coding upstream 546106 24012963 ~ 24013301 (+)
G52817 NA non-coding downstream 74543 24705538 ~ 24705906 (+)
G52827 LOC107550338,LOC103365918,LOC107551495,LOC104947949 non-coding downstream 120900 24751895 ~ 24753180 (+)
G52892 NA non-coding downstream 328821 24959816 ~ 24960103 (+)
LOC120558677 NA non-coding downstream 378994 25009989 ~ 25015398 (+)
G53056 NA non-coding downstream 1178718 25809713 ~ 25811047 (+)
ctnnbip1 ctnnbip1 other upstream 745001 23791447 ~ 23814406 (+)
tmem201 tmem201,LOC102777799 other upstream 794242 23746365 ~ 23765165 (+)
atxn7l2b kcnc4 other upstream 1490928 22991252 ~ 23068479 (+)
lamtor5 lamtor5,LOC102787529 other upstream 1712469 22842044 ~ 22846938 (+)
LOC120559933 NA other upstream 1996886 22562154 ~ 22562521 (+)
LOC120559118 LOC102791662 other downstream 309800 24940795 ~ 24945320 (+)
G52871 LOC104956590 other downstream 322447 24953442 ~ 24957330 (+)
tprg1l tprg1l,LOC102784883,LOC106513028 other downstream 1112594 25743589 ~ 25748321 (+)
G53096 ybx1 other downstream 1440590 26071585 ~ 26076664 (+)
G53232 LOC104966952,LOC103362776,LOC102800046,LOC102208894 other downstream 1721465 26352460 ~ 26353463 (+)

Expression


Co-expression Network