LOC120558932


Basic Information

Item Value
gene id LOC120558932
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 25409728 ~ 25414753 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800294.1
CTAACAGATGAAGACCTGGAGCTGGGTTTAGGTGTCAGCAGTTTAATGCATCGCCGGAAACTCCGCCTGGCCATTGAGGATTACAGAGATGCTGAGAACGGCTGTCCAAGGCTGCAGATATGGACCACCACTGGGTGGCCAAGGCCTGGTTAAGCGACGTGGGCTTGCCTCAGTACTCGCAGGCCTTTCACAACAACTTGGTAGACGGGCGCCTGCTGAACTCCCTGACACGTCGTGACCTCGAACGTCACCTAAACATCACCAAGAAGTTCCACCAGGTCAGCTTGCTGCTGGGCATCGAACTGCTGCACTTACTCAATTTCGACAAGGAGGCACTGCAGGCTCGCCGGATACAGTGTGAGCACCAGAACGTGGATCCGTTGGTGTGGACCTCTCATCGGGTCATGAAATGGATCAAAGATATTGACCTGAAGGAGTTTGCTGAAAGTCTTCTAAGCAGTGGAGTTCATGGCGCTGTCATGGTTCTTGACCCCACTTTTAACACTGACGCCATGGCAACAGCACTGGGGATTCCTAGCAACAAGCACATGGTTCGCCGACACCTTGTTGAGGAGATGAAAAACCTGATTGGCCCGGCCAGAACGGATGCAAAGCAGGAATACGAGCGTCTCGACCTGGGAACCCCGCCAACCCCCCTTCGCCAGAACTCCCTGGGCCGACCGCCCAGCTCTGCCAGCCGACACACTGATGACGAAGGCTCGCTGAGGAGGAGGGCTGTcaagcCTCCAACCGGCTTCAGCCCCAAAGCCCGCAATGGGCGAGACTTGAGTTGCCACAGCAGCTATGGCTCCCTGCCTCGGGAGGGTCGAGACCAGACTCCGCCCAGAGCCGAGGGAAGCCCGATCCACGGTTACACCAGCATCGAGGTCACCAACGTGTGAGGTCATCAGAGTGTGACGAAACACCAGCTGTCAGCTTCATCACAACTAAATCTAAATCACATCATGGACATTTGTCATGTGCACCTGAACATGGGATGGTTATTTTTTCTAAAGATGAGAATTTAGAGGACAGATTGCACTTTTAAAACGCCACAGGATTCTTTTTTACAAGTTTCCTGGTTTAAGAAAACATTTCATTGTGAGCAGGTGATATTTTGATGTTATTTCCCTTCCACAGCGCCAGAATCAAGAGATGAAGGACTCTAGCTAAATGATTATTTTTCTATTACTTTGTGTGTAAATGGTTCTTTGTGAATCTGGATGCAACTTggctatttgtttttgttgactGGTTACTGTTTTCTGAggaaaatttaattaaaaaaaaacaacaaaaaacaacaactacgGTTTGCATTATACAGGGTACTTgatgacaaaatgaaaaaaaatttcatATCAGTGTAAACTGTTCTTGTTTCATTCAACACTGCTGTTTGTGATGCCTTGTTAATGTAACTGAGGAcagtggacaaaaaaaaaaaaagacaaatttaattttaaattctCAAGTTTATGTTTGATAGTCATTTTTCATCTTGCACATTTACACAGTTGTGTCTAAACAAATGTAGCACCCTCATTTGATGTTTTATACTGTGCCGTAAACATGGTAAAATATTTGAACAATGCCAACAAAAGATGACTGCAGAGCTGTATGTCGATAGAAGCCTCAGGGCTGAAAGGTGTGAGGATGCATAAATGTGAAAATGAGAGTTCCTTAAATGAAATAAAGATAACGTCTCTAATCTGATA

Function

GO: NA

KEGG:

id description
ko05110 Vibrio cholerae infection

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800294.1 True 1718 mRNA 0.46 6 25409728 25414753

Neighbor

gene id symbol gene type direction distance location
LOC120558931 kazn,LOC106524179,LOC107088875,LOC100696443 coding upstream 3778 25188706 ~ 25405950 (+)
prdm2a NA coding upstream 225497 25174578 ~ 25184231 (+)
si:ch211-156j16.1 NA coding upstream 244534 25155352 ~ 25165194 (+)
LOC120558685 foxj3,LOC100698572,LOC102787620 coding upstream 255227 25088905 ~ 25154501 (+)
zmynd12 zmynd12 coding upstream 344552 25058460 ~ 25065176 (+)
tmem51a NA coding downstream 8129 25422882 ~ 25425937 (+)
LOC120558819 NA coding downstream 25608 25440361 ~ 25443840 (+)
prdm16 prdm16,LOC102785463 coding downstream 117348 25532101 ~ 25714390 (+)
tp73 tp73,LOC102784606 coding downstream 350407 25765160 ~ 25793225 (+)
rer1 rer1 coding downstream 379978 25794731 ~ 25806161 (+)
LOC120558677 NA non-coding upstream 394330 25009989 ~ 25015398 (+)
G52892 NA non-coding upstream 449625 24959816 ~ 24960103 (+)
G52827 LOC107550338,LOC103365918,LOC107551495,LOC104947949 non-coding upstream 656548 24751895 ~ 24753180 (+)
G52817 NA non-coding upstream 703822 24705538 ~ 24705906 (+)
G52756 NA non-coding upstream 1019601 24387153 ~ 24390127 (+)
G53056 NA non-coding downstream 394960 25809713 ~ 25811047 (+)
LOC120559215 NA non-coding downstream 580480 25995233 ~ 25997094 (+)
G53109 NA non-coding downstream 681606 26096359 ~ 26099635 (+)
G53221 NA non-coding downstream 910468 26325221 ~ 26325468 (+)
G53222 NA non-coding downstream 911166 26325919 ~ 26329616 (+)
G52871 LOC104956590 other upstream 452398 24953442 ~ 24957330 (+)
LOC120559118 LOC102791662 other upstream 464408 24940795 ~ 24945320 (+)
ctnnbip1 ctnnbip1 other upstream 1595322 23791447 ~ 23814406 (+)
tmem201 tmem201,LOC102777799 other upstream 1644563 23746365 ~ 23765165 (+)
atxn7l2b kcnc4 other upstream 2341249 22991252 ~ 23068479 (+)
tprg1l tprg1l,LOC102784883,LOC106513028 other downstream 328836 25743589 ~ 25748321 (+)
G53096 ybx1 other downstream 656832 26071585 ~ 26076664 (+)
G53232 LOC104966952,LOC103362776,LOC102800046,LOC102208894 other downstream 937707 26352460 ~ 26353463 (+)
LOC120559113 LOC108236696,LOC104966950,LOC103362773,LOC103384494 other downstream 963439 26378192 ~ 26383047 (+)
atp5f1e NA other downstream 1028297 26443050 ~ 26444890 (+)

Expression


Co-expression Network