sypl2b (LOC104926818,LOC104942234,LOC103367903)


Basic Information

Item Value
gene id sypl2b
gene name LOC104926818,LOC104942234,LOC103367903
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 23057049 ~ 23061335 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800300.1
GACGCCTGAACGTCAGTGATCACGTGTCATCTACTACGATTCgctgaagttggagaaaagTTTGACAAACCTGAAGATCTTCCAGAGAGCCAGAGATTTGCTAAAGATCCAGAAAGGAGACATCGATACTAAGGTTCTTTATCTCCAAACACACGATGGAATCCGTCGCCCAGAAAGTGCTGTCTTCGGGATTCAATCTTGACCTGGGACCTCTGAAAGAACCGTTGGCATTCATCCGTTTGCTAGAATGGGTCTTCTCCATATTTGCCTTTGCCACGACTGGAGGTTACAGCGGCACAACCAGCATCAACGTCCAGTGCCATGGGAGTCCCAGTCAAGAAATAAAGGCAGCCTTTAACTACCcattcagGTTGACGCAGCATCCCTATAGTGTTCCTGACTGCAAAATCAATCAAACCACTACCACTGAGTACTACCTGACTGGAGACCACACATCCTCGGCACAGTTTTACGTCTGCATTGGAGTGTTGGCCTTTCTCTACACCACTGCCACACTAGTCCTGTACTTGGGCTACCAGCACTTGTATAGAGAAACTAGTCGTGGCCCCACCGTGGACCTGTTGGTGACTGCTGCCTTGACCTTCATGTGGCTGGCATCATCCTCTGCTTGGGCTAAAGGCTTGTCTGATGTGAAGTGGGCCACCAGCCCTTCAACCATTGTAGCTCTTTCTGAGGTTTGCAAAGATGTCAACAAGTGCACCCCAGGTGCTCTGCCTCACATGGGCCGACTAAACGCCTCTGTGATTTTTGGTTTTCTTAACCTCATCCTTTGGGGCGGCAACTGCTGGTTCATTTACAAGGAAACCCCTTTCCACAAATCAGCCAACCCGCCTGCACATGTGGAGGGGGGAGTCGGGCCATCGTAACTCACCAGCTtccacatttcaaaatgtagtgCTATTGAATGAGTCAATTTGGTACTAATTGTtaggaaaaataaaatagattagaAGGTATACATTTCCAAAATGTACTGTTCCTTTTTTGCTAAttattaattttacatttagGGCTGTATTATCTCAAATACATTCAGGAAAGGAACTTAAATTTGAGATGTTCATAGTGACATAAATTCAGGAAATTGTAGCAGTCAAAAATGTTATTCTCATAGATGCtcagtttacttttttttaacatatttttaccCAGGTATCCAAAACAAAGGGTCCCTTATCTCAAGTGGTACTGCAGATGTGGACTGTGCAGCATTGTTGGCGATAAATCAGAATGAAGCATCACTTTGTCAACTTCAACTGCCAACAGTATTTCTGTACCATGAATCATTTCTGCCATcagcattttctttaaaaaaaaaaaaaaaaaaactcagggCTGTTGAGTGTACAAAATACAGTATAGctaataaattattaaatatttgaTGTGCATCTATTATTAACAAGTCTAAACAAACTAACATTTCAGTCTAATCCTAAAACATATAGTAGGCATCAAAACATGCAGTTATGATGAATTCATGTTAAATAGTAGTTAATTGGAAAATTAATCCAGTTGCCATTATGAGATTATTTATAATGGGTGAAAGCAATTTTATTGCATCATTTTTGTGTAACGTTGTGTCTTATCTCACTGTGGAAGGCTAAATTCAGTATTTTAGCCTAACCGCTGAATATTATGTTGAATGTAGTGGATATATTCGTTCAGAGCACGTTCGCTCTTTAtgaatttttaatttaaaactaGGCAGATGCTATTTGCACACAGGTGTCAGTAGCCAATAATGCTAACTGCACCCAGTTGTGttgtctaaacctaaccaagtagttgtTTCCTAaaccaaattacaaaaataagtCTGTTACGCTTCTTCTATTTCACAACTTTTGCTCTTTATACTACTAGATGGCAGGGGGTGAAGGGGCCAGGTGTAAATAGCCACCACGTGACTATTCTCACCCAGGTGCAAATAGACTATTACACTTATTGGGGAGAATTTTGGATCTTTCCCCTggatgtttataatgtttacatttcaaaaaacaaaagtcCTACAGTATTTCAAAGACGATGTACCATAAATTGTATAGCCTTAGCTAGTGGTTAGTAATAATTGATtgagctctaacctgttactaATTaactgtttttcttgtttttgccTGGCTTCTACCTCCACTTTCTTATAAGACAAGCTGTGTTTCTCTATTACTGCCATCATAATGATTCCCTACTTTGATATAGCCTTGCTTGATTCAAAGTTTCTAGTTTGATCCACCACTTTGTTGATGAAGGTGTCCCATAGATGAAACTGCATGGACATGAAATGCTGTGCATCATTAAAAGGAAGAAATGGA
>XM_039800301.1
GACGCCTGAACGTCAGTGATCACGTGTCATCTACTACGATTCgctgaagttggagaaaagTTTGACAAACCTGAAGATCTTCCAGAGAGCCAGAGATTTGCTAAAGATCCAGAAAGGAGACATCGATACTAAGGTTCTTTATCTCCAAACACACGATGGAATCCGTCGCCCAGAAAGTGCTGTCTTCGGGATTCAATCTTGACCTGGGACCTCTGAAAGAACCGTTGGCATTCATCCGTTTGCTAGAATGGGTCTTCTCCATATTTGCCTTTGCCACGACTGGAGGTTACAGCGGCACAACCAGCATCAACGTCCAGTGCCATGGGAGTCCCAGTCAAGAAATAAAGGCAGCCTTTAACTACCcattcagGTTGACGCAGCATCCCTATAGTGTTCCTGACTGCAAAATCAATCAAACCACTACCACTGAGTACTACCTGACTGGAGACCACACATCCTCGGCACAGTTTTACGTCTGCATTGGAGTGTTGGCCTTTCTCTACACCACTGCCACACTAGTCCTGTACTTGGGCTACCAGCACTTGTATAGAGAAACTAGTCGTGGCCCCACCGTGGACCTGTTGGTGACTGCTGCCTTGACCTTCATGTGGCTGGCATCATCCTCTGCTTGGGCTAAAGGCTTGTCTGATGTGAAGTGGGCCACCAGCCCTTCAACCATTGTAGCTCTTTCTGAGGTTTGCAAAGATGTCAACAAGTGCACCCCAGGTGCTCTGCCTCACATGGGCCGACTAAACGCCTCTGTGATTTTTGGTTTTCTTAACCTCATCCTTTGGGGCGGCAACTGCTGGTTCATTTACAAGGAAACCCCTTTCCACAAATCAGCCAACCCGCCTGCACATGTGGAGGGGGGAGTCGGGCCATCGTAACTCACCAGCTtccacatttcaaaatGTATCCAAAACAAAGGGTCCCTTATCTCAAGTGGTACTGCAGATGTGGACTGTGCAGCATTGTTGGCGATAAATCAGAATGAAGCATCACTTTGTCAACTTCAACTGCCAACAGTATTTCTGTACCATGAATCATTTCTGCCATcagcattttctttaaaaaaaaaaaaaaaaaaactcagggCTGTTGAGTGTACAAAATACAGTATAGctaataaattattaaatatttgaTGTGCATCTATTATTAACAAGTCTAAACAAACTAACATTTCAGTCTAATCCTAAAACATATAGTAGGCATCAAAACATGCAGTTATGATGAATTCATGTTAAATAGTAGTTAATTGGAAAATTAATCCAGTTGCCATTATGAGATTATTTATAATGGGTGAAAGCAATTTTATTGCATCATTTTTGTGTAACGTTGTGTCTTATCTCACTGTGGAAGGCTAAATTCAGTATTTTAGCCTAACCGCTGAATATTATGTTGAATGTAGTGGATATATTCGTTCAGAGCACGTTCGCTCTTTAtgaatttttaatttaaaactaGGCAGATGCTATTTGCACACAGGTGTCAGTAGCCAATAATGCTAACTGCACCCAGTTGTGttgtctaaacctaaccaagtagttgtTTCCTAaaccaaattacaaaaataagtCTGTTACGCTTCTTCTATTTCACAACTTTTGCTCTTTATACTACTAGATGGCAGGGGGTGAAGGGGCCAGGTGTAAATAGCCACCACGTGACTATTCTCACCCAGGTGCAAATAGACTATTACACTTATTGGGGAGAATTTTGGATCTTTCCCCTggatgtttataatgtttacatttcaaaaaacaaaagtcCTACAGTATTTCAAAGACGATGTACCATAAATTGTATAGCCTTAGCTAGTGGTTAGTAATAATTGATtgagctctaacctgttactaATTaactgtttttcttgtttttgccTGGCTTCTACCTCCACTTTCTTATAAGACAAGCTGTGTTTCTCTATTACTGCCATCATAATGATTCCCTACTTTGATATAGCCTTGCTTGATTCAAAGTTTCTAGTTTGATCCACCACTTTGTTGATGAAGGTGTCCCATAGATGAAACTGCATGGACATGAAATGCTGTGCATCATTAAAAGGAAGAAATGGA

Function

NR:

description
synaptophysin-like protein 1 isoform X1

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800300.1 True 2339 mRNA 0.40 6 23057049 23061335
XM_039800301.1 False 2078 mRNA 0.41 7 23057049 23061335

Neighbor

gene id symbol gene type direction distance location
ngrn NA coding upstream 23945 23031296 ~ 23033104 (+)
slc6a17 slc6a17,LOC104944562 coding upstream 114174 22919774 ~ 22942875 (+)
slc16a4 slc16a4,LOC102787232 coding upstream 179787 22847985 ~ 22877262 (+)
LOC120559530 LOC104964419,LOC104927136 coding upstream 228501 22826631 ~ 22828548 (+)
LOC120559125 NA coding upstream 233406 22811870 ~ 22823643 (+)
gpr61 LOC104942230,LOC103367872,LOC101482146,LOC102303595,LOC100709777 coding downstream 38218 23099553 ~ 23104095 (+)
gnai3 LOC103367862,LOC105931781 coding downstream 48595 23109930 ~ 23126912 (+)
ampd2b LOC103367831,LOC100709506,LOC102200760 coding downstream 84351 23145686 ~ 23167490 (+)
LOC120559793 LOC104960090,LOC107090275,LOC107390786 coding downstream 108899 23170234 ~ 23176129 (+)
LOC120559240 LOC102793838 coding downstream 132051 23193386 ~ 23200479 (+)
G52364 nfya non-coding upstream 33721 23020806 ~ 23023328 (+)
G52379 ahcyl1,LOC104942237 non-coding upstream 37041 23009177 ~ 23020008 (+)
G52342 rbm15 non-coding upstream 168362 22884049 ~ 22888687 (+)
G52333 NA non-coding upstream 209753 22834798 ~ 22847296 (+)
G52294 NA non-coding upstream 294495 22750063 ~ 22762554 (+)
G52403 atp5f1 non-coding downstream 79575 23140910 ~ 23192988 (+)
G52461 NA non-coding downstream 160591 23221926 ~ 23246504 (+)
LOC120558323 NA non-coding downstream 203896 23265231 ~ 23275195 (+)
G52509 NA non-coding downstream 386018 23447353 ~ 23447557 (+)
G52569 NA non-coding downstream 625017 23686352 ~ 23687361 (+)
lamtor5 lamtor5,LOC102787529 other upstream 210111 22842044 ~ 22846938 (+)
LOC120559933 NA other upstream 494528 22562154 ~ 22562521 (+)
G52210 LOC104964406,LOC106525460,LOC105931770 other upstream 496721 22556329 ~ 22560328 (+)
LOC120558641 LOC103363734,LOC104967523 other upstream 962159 22090197 ~ 22094890 (+)
avpr2aa avpr2,LOC105897269 other upstream 996404 22046763 ~ 22060645 (+)
tmem201 tmem201,LOC102777799 other downstream 685030 23746365 ~ 23765165 (+)
ctnnbip1 ctnnbip1 other downstream 730112 23791447 ~ 23814406 (+)
LOC120559118 LOC102791662 other downstream 1879460 24940795 ~ 24945320 (+)
G52871 LOC104956590 other downstream 1892107 24953442 ~ 24957330 (+)
tprg1l tprg1l,LOC102784883,LOC106513028 other downstream 2682254 25743589 ~ 25748321 (+)

Expression


Co-expression Network