fgd1 (fgd1,LOC103367265)


Basic Information

Item Value
gene id fgd1
gene name fgd1,LOC103367265
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 38133222 ~ 38188792 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800479.1
ccctccttctccaGCCAGTTCAGCACCATGAGGTTCTCCTACCACCTGAACGCCAGCGGcgccgcagcagcagcaccgctaGCCTGCAGCGCCACCCGCAGGACAGgcccctcctcctcctccagtccCAGTTTGCTGACTAAGAGTCTCTCCCTGGAGCCGTCCTGCTCCTGCGGCACGCAGGGCGCGGACGGAGCCCGCCCCCAGCAGCTGAGCTCTGACCCTGGGCCCAGCTCCTCGTTATCAGGCCCCCCATCCCTGGAGGGAGGGGCGGAGCTAACGGAGCGCCGCGGATCCGCTAACGGGCTACTGCTGGTCAACGACACGGGGCCACCAGAGCTGCCGGCTACCACCATTACACCACCGAGCAAGAGCAGACCGCCTCTGCCCGGACCAAAACCTCAGGTCCCCCCGAAGCCCCCCCACCTCCAGCAGCGGGGGGGGTCGAGGCCCCGCCCCCGGGCTCCAGAcaagcccctcccccctcccccgccCTGCAGGTCCCTCCCGGCGGACCCCCGGGGGGGCCGGACCCCCCCCACCCGCGCCGATGGCACCGCCTCCCCCACCTGCGTCCTGTCGCTCATCGAGAAGTTTGAGCGcgagCAGATCATCGTGGTTCCTGACATCACCGGCGGCGCTCTGTGTCCCCGCCTCCCcgaccccccctcctcctcctcctcctcctctcgtccttcatcacccccccaacccccgtCGCCGGCCCCTCCCCCGCCTGACGACCAGCCGCCCCTCCCTGATGACATCACCGCGGGGTGcgagggggaggaagagggagacacCGACCTGCAAGGTAACCCTGACGACGACGACGATGACGAAGATGAAGAGCTGGCCGCGGCGTGCCGAGACGACCTCCGTCAGAAGCGCCTGTCCATGGAGTCGGGCTACAGCGCCTCGGAGAGACACCTAGAGGACGACGTGGTTGCCGTGGAGATAAGGGAGCCGCCACAGCCGCCGCCGGCTCTCGACCAATCGGAGCTGCCCTCCGAGCGTCTGTCCCTCCCCTCCTCGCAGACCGAGGGGAAGCTGGCCAACCGGGACAGCGGCATCGACAGCATCAGCTCGCCGTCGCACAGCGAAGAGCTGTGCTTCGCCGGCGTGGAGGAAGGGGGCGTGGTCTACCCCTGTAGCCCCGCCCTCCTGCCTCGTCTCTCCAGCTCGTCCTCGTACGCCGAGGACGGGGACGCCGAGGCGCGTGGCGCCGCGGCACGCCGGAGGAGAGACTTCTCCGAGGAGGGAGACAGCgacctggaggaggaggaggaggaggaggcggagcttacgctggtgctgcctccgcccaagacagacagacaggactcTGCTGAGCTGTCTGTCCAGCAGAGGGTCTTCAACATCGCCAACGAGCTGCTGCACACAGAGATTGCCTACGTCTCTAAGCTCCACCTGCTGGACCAGgtTTTCTGTGCTCGGCTCCTGGAGGAGGCCCGCTCTCGCTCCTCCTTCCCGTGCGACGTGGTTCAGGGAATCTTCTCCAACATCTGCTCCATCTACTGTTTCCATCAGCAGTTCCTGCTGCCAGCGCTGCAGAAACGCATGGAGGAGTGGGACTCGAACCCCCGGATCGGGGACATCCTGCAGAAGCTGGCTCCGTTCCTGAAGATGTACGGCGAGTACGTGAAGAACTTTGACCGAGCGAtggagctggtcaacatctggaTGGAGAGATCGGCTCAGTTCAAGGCCATCGTCCAGGAGATCCAGAGGGAGGAGCGTTGTGGGAACCTGACTCTGCAGCATCACATGTTGGAGCCGGTTCAGAGGATTCCTCGCTACGAGCTGCTGCTCAAAGATTATCTCCACCGCCTGCCGCAGGACGCCCCGGACCACAGGGACGCCCAGAagtCTCTGGAGCTCATCGCCACGGCAGCAGAACACTCCAACGCTGCCATCAGGAAGATGgagcGGATGAGGAAGTTGCTGAAGGTGTACGAGTTGTTGGGAGGAGAAGAAGACATTGTTAACCCGACAAACGAGCTGATTAAAGAAGGACACATCCTCAAACTGTCCAACAAGAACGGGACCACGCAGGACAGATACCTCATACTGTTCAACGACAGGTTGCTCTACTGCGTCCCGAAGCTGCGTCTGATTGGTCAGAAGTACGGCGTCCGAGCTCGCATCGATGTGGACGGGATGGAGCTGAAGGAGACCAGCAGTGTTGCAGTTCCCAGGACGTTCCTTGTGTCTGGAAAACAGAGATCCCTGGAGCTGCAGGCcagGAcggaagaggaaaagaaagactgGATACAGgcCATCCAGGTAACCATCCAGAGACACGAGCAGACGCTGGAGGGCTTCAGACATCTCAACTGTTCCCTACGAGACGACGAGTCCACACCGCCTCACTCTCCGagcTGCGTGGAGTTGGGGAAGCGAGCTCCGACTCCGATCCGAGAGAAGGAAGTCACTCTGTGTATGAAGTGTCAGGAGCCGTTCAACTCCATCACCAAGAGACGCCACCACTGTAAAGCCTGCGGACACGTGGTTTGTGGGAAATGTTCGGAGTTTCGTGCTCGTCTTTCGTACGACAACAACCGCacaaaccgtgtgtgtgtggactgctACGCCATGCTGGTGGGGGCCTCGCCGTCGGCCGCCACGCTGAGCACCAGCACCCAGCGCAGGCGCTCCATCCTGGAGAAACAGGCCTCCCTGGCAGCCGAGCACAGTGTGATTTGTAGTTTTCTTCACCACATGGAGAAAGGAGGCGGGAGGGGCTGGCAGAAGGCCTGGTTCGTCATCCCCGAAAACGAGCCACTGGTGCTCTACATCTACGGAGCTCCACAGgaCGTAAAGGCGCAGCGCAGCGTGCCTCTGATCGGCTTCGAGGTCTCCCTTCCCGAGTCATGTGACCGCCTGGAGCGCCGCCACGCCTTCAAGATCTCCCAGAGTCACCTGACGCTGTACTTCAGCGCCGACGGGGAGGAGCTGCAGCGGCGGTGGATGGACGTCCTGATGAGGGCCGGCAGGGGGGAGGAGCCTCCGGTCTACCGGCCAATCGTGGAGCGGCTGGAGGAGGAGACGGAGGAGCTGGCGGCCGCGGCCGCGGCGGAGGGAGAAAACACGTGATTCTGCCGGACAAAGAAGGATGGCTATAATGAAGACCGGTCGCTAATGGATACCGTTACAAAACATGTTCATACACTCGTAGCTgatacaacacatacacacacacacacacacagacacagagacacacacacacactgcatgatTCCTCCTCCAGTCAGACACAAGATGGCGTCTCTCTCTGTTGGTTTTTTTCCCACCTGTGCCGGACACTATTTCTGGGGGTCCCAGGACCGGTTATTGTTTACAGTCCGAGTCCATACTTTATTCTGTGTCCTAGCTCCAGACGACATTGCTGTTAATTTCTATAAACAGTTAAAAGTACAGTAAAAATAAGATAATAAATACAGCTGATAACTGTTAGGTTCAGAGATTGCATTTTGACCAATAGCGTTCCTCATCTCTTTGGAAGGTTTACCTAAACGGAAACCAGAACGCTTCTGATACCAAAAATCTTGTCGTGTTGCCAACAGATCATGTATTCAGatgcagatatctgtttatAGAGATTAGTAAATCTGTGACGCTGCAGGCTGGTTACTGTTAAGGCtccgacacaccaacccgatggcTGACCTTCGGCAGAACAGTCAGTCGGACTGACTggctccccgagttggtccaaaaactattttctcaaaacatccaaaaaagtgtgaaaagcgcaattttttttgaaaaagtgacaaaaatatccaAAATAGCGCCAAATTTGTATACAAAAATTCCAAAacatcaacaaacaaaaaaacgtgTCCAAaacattgattaaaaaaagaacccAAAATGTCGGAAAGAGCGgcaaatatgttgaaaaaagtgagaaaaaccaGAAATATCGGAAAATAGCATCGAAGACGAATGGAacaaatctgattggctggtaactttaaaaaacaTACTAACCTtgttggctggtgatcaaaaaaagttaatttaaagcccCCGTATACGACCCCTTAATGAGAATGCCGTCGAATACGTTCTGATGTGATCTGAACATTCGCTGATCCAGGTCCAGGTTCTGGTCTCTGATcctgccctgccatacaaaaccgtttttacttgcattttttgaaatctattaggtccatatgtgtgtgtgttatgtggtgaatgtgaaaatgaactacta

Function

symbol description
fgd1 Predicted to enable guanyl-nucleotide exchange factor activity and metal ion binding activity. Predicted to be involved in cytoskeleton organization and filopodium assembly. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in X-linked Aarskog syndrome and non-syndromic X-linked intellectual disability. Orthologous to human FGD1 (FYVE, RhoGEF and PH domain containing 1).

NR:

description
PREDICTED: FYVE, RhoGEF and PH domain-containing protein 1-like

GO: NA

KEGG:

id description
K05720 FGD1; FYVE, RhoGEF and PH domain containing 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800479.1 True 4252 mRNA 0.57 19 38133222 38188792

Neighbor

gene id symbol gene type direction distance location
tfe3a NA coding downstream 14594 38083822 ~ 38118628 (-)
LOC120559055 NA coding downstream 51006 38079881 ~ 38082216 (-)
LOC120559054 NA coding downstream 56194 38074417 ~ 38077028 (-)
mthfr mthfr coding downstream 803819 37297505 ~ 37329403 (-)
LOC120559612 LOC103363412,LOC108249421,LOC107391357 coding downstream 879181 37220534 ~ 37254041 (-)
LOC120559803 LOC102788279,LOC102300940,LOC107099231,LOC104961425 coding upstream 4468 38193260 ~ 38206091 (-)
LOC120559058 NA coding upstream 140474 38329266 ~ 38336906 (-)
LOC120559059 LOC103370165 coding upstream 154695 38343487 ~ 38352553 (-)
pcsk1nl NA coding upstream 319700 38508492 ~ 38531063 (-)
LOC120558637 syp,LOC103367257,LOC102314167,LOC102203308 coding upstream 349881 38538673 ~ 38567635 (-)
G56482 NA non-coding downstream 60002 38072615 ~ 38073220 (-)
G56479 NA non-coding downstream 64368 38065723 ~ 38068854 (-)
G56475 NA non-coding downstream 69472 38059909 ~ 38063750 (-)
G56469 NA non-coding downstream 78559 38030998 ~ 38054663 (-)
G56495 NA non-coding upstream 4983 38193775 ~ 38484784 (-)
G56501 NA non-coding upstream 52940 38241732 ~ 38242674 (-)
G56510 NA non-coding upstream 81675 38270467 ~ 38333977 (-)
G56511 NA non-coding upstream 83711 38272503 ~ 38363799 (-)
G56513 NA non-coding upstream 86537 38275329 ~ 38275620 (-)
LOC120559229 NA other downstream 86553 38000002 ~ 38046669 (-)
G56436 NA other downstream 192674 37926194 ~ 37940548 (-)
LOC120559227 esd other downstream 232879 37882168 ~ 37900343 (-)
G56376 NA other downstream 293373 37569060 ~ 37839849 (-)
G56335 NA other downstream 759906 37372635 ~ 37373316 (-)
G56504 NA other upstream 66871 38255663 ~ 38378423 (-)
G56539 NA other upstream 216468 38405260 ~ 38406187 (-)
G56540 NA other upstream 230490 38419282 ~ 38513859 (-)
G56544 NA other upstream 240424 38429216 ~ 38500711 (-)
G56557 NA other upstream 288858 38477650 ~ 38479164 (-)

Expression


Co-expression Network