zgpat (zgpat,LOC102796033)


Basic Information

Item Value
gene id zgpat
gene name zgpat,LOC102796033
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 30896977 ~ 30902908 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800561.1
TTTATGACACAACGCTAGACCAGGGATTTCTTTGTTGAAAAAAGCTACCATATGAATGATAGTCGTATGAAAAAGAATGATCTGGCATACATTTGGACACTAGTTTAACACTGGCAAGCTGCATTTCTAACTTTGTACTGTCAGTAACGTTTGTTTGCTGTCAGAACCATCCGTCTGAagacattgtttttattttgaaagaaaagACAATTCACAACATGGGTCTACCGATCCTCTTCTTTTGCTAGCTTAAACTGGACCGGTTTATGTTGTTATAGTGCTAATTTAGCTATTTGAATTActaatttttttaacatatcaCATTTTTTCATGGCAGCTGCTTTTTCCGTGTATGCCGTGGATGTCAGATAGCTAACTTTAGTCTAATTACAAAGGCGTTTTGGAGGCTTGATGCTGTCCATTCCTGCCCTGCCCTGTGCCAAGCATTAGCATGGAAGAAGAAACCCTTGAGGCAGCCATCAGTACCTATGGCGCCCAGTTGCAGCAGGTGGAGACAGCcctgtcagctggcctggacCCATCCCAGCAGTCAGACTTGCTCAAACTGAAAGAGGACCTTTGTCAGCTGATAGAGCTCACAGAGTCTAGCCTGGTGTCTGTCAAAAAGAGTCGGCTTCTGGCCAGCCTCGAGGACAGTTATGGACTGCAGGCAAACGCCTCAGAGGCAGCAGCTGACACAAACGGTGCAAACAACAGTTTGAACAATGAATTTGCTGCTTTCTACTCTGAACTCGGGGAGTCGTCAGGTAGTAGCTCTGATACTAGAGAGAGGGACAATGAGGAGGAAGGTGGAATAGAGAATGGTGaacaggaggaggcagaggaagaagaagatgcACTCAGTGGTACCAAAGTAAGAGCACCCTACAGGACAACATGGGGGACACTGGAGTATCACAATGCCATGGTGGTTGGGGCAGAACCGCCAGATGGAGAAGAGGCACAAGTTAGAGTGTTCTATGTCTACCCCACCCAGAAGTCTATGAAACCCTGTCCATTCTACCTTGAGGACAAATGTCGCTTCCCTGATAATTGCAGGTTTTCCCATGGTGAAGTGGTGTATGTGTCGGAACTCAGAGAGTTCCTTGAGTTTGACCTCAGTAATCTTGAAGAAGGCTCATCCTGTTTGGCTCGACATGAGGACGGCATCTGGTACCCAGCCAAAATTAAAGAAATTGACAGTGGTTTCTACACTGTGAAGTTTGACTCAGTGCTGCTGAAAGATGTTGTGGTCGAGGCCGACTGCATTATCCCGCCTTTGAGAGCAGATGACCCGCTCTCCTCTGACTCTGACCTGGACGACAGTGGAGATGGAGATGATGCGGCTTATGCAAAAGTTATGGACTCTGCTGTAGAATACACAGAAATGTCAAGCAGTGCAAATTTTGGTGGCTGGGAGGCACATACCAGAGGCATCGGATCCAAGCTTATGCTCAAAATGGGCTACGAATATGGGAAAGGTTTAGGAAAGATGCAGGAGGGTCGAGTGGAGCCAGTCATGGCAGTGGTCCTACCCAAACGAAAGTCTCTGGACGAATGTGCCGAGCTCACACAGAGACGCACCCAGAGCAAGGCGGCTAAAGATGGTACACAAACAGGCCGCCCAAAGAGACGCAGAAAGCCTCGGGGCGCCACCGGAGGGCGCCGTAACGTCTTTGACTTTCTCAACCACAAGCTAGGAGGCAAGAGCAGCGATCCTGCTGAGGGGGGTGCTGCGGCACTGTCAGCAGCATCGGGGGTGGAGGCCTACAGGGGAGGAACAAGCACCAAGAGGACTCTAAATGTGAAGCTGTTCCAGGCGTCTGAGAGGGTGTCGCAGACTGAGAGGGAGATCCAGAAACTGACTGAGTCACtcggcagacagacaggcagCTCCAGGGTGAAGCAGCTGGAAGAGAAGCTGTCAGCGGCCCGCAAGCTGCTGGCCCAGCAGAAGGCCCAGGAGCTGTCCATCCAGAGAGAAAACAGGAAGGCTGACACACACAAGAAGATGACTGAGTTTTAAGCTCAA
>XM_039800562.1
ATGGAAGAAGAAACCCTTGAGGCAGCCATCAGTACCTATGGCGCCCAGTTGCAGCAGGTGGAGACAGCcctgtcagctggcctggacCCATCCCAGCAGTCAGACTTGCTCAAACTGAAAGAGGACCTTTGTCAGCTGATAGAGCTCACAGAGTCTAGCCTGGTGTCTGTCAAAAAGAGTCGGCTTCTGGCCAGCCTCGAGGACAGTTATGGACTGCAGGCAAACGCCTCAGAGGCAGCAGCTGACACAAACGGTGCAAACAACAGTTTGAACAATGAATTTGCTGCTTTCTACTCTGAACTCGGGGAGTCGTCAGGTAGTAGCTCTGATACTAGAGAGAGGGACAATGAGGAGGAAGGTGGAATAGAGAATGGTGaacaggaggaggcagaggaagaagaagatgcACTCAGTGGTACCAAAGTAAGAGCACCCTACAGGACAACATGGGGGACACTGGAGTATCACAATGCCATGGTGGTTGGGGCAGAACCGCCAGATGGAGAAGAGGCACAAGTTAGAGTGTTCTATGTCTACCCCACCCAGAAGTCTATGAAACCCTGTCCATTCTACCTTGAGGACAAATGTCGCTTCCCTGATAATTGCAGGTTTTCCCATGGTGAAGTGGTGTATGTGTCGGAACTCAGAGAGTTCCTTGAGTTTGACCTCAGTAATCTTGAAGAAGGCTCATCCTGTTTGGCTCGACATGAGGACGGCATCTGGTACCCAGCCAAAATTAAAGAAATTGACAGTGGTTTCTACACTGTGAAGTTTGACTCAGTGCTGCTGAAAGATGTTGTGGTCGAGGCCGACTGCATTATCCCGCCTTTGAGAGCAGATGACCCGCTCTCCTCTGACTCTGACCTGGACGACAGTGGAGATGGAGATGATGCGGCTTATGCAAAAGTTATGGACTCTGCTGTAGAATACACAGAAATGTCAAGCAGTGCAAATTTTGGTGGCTGGGAGGCACATACCAGAGGCATCGGATCCAAGCTTATGCTCAAAATGGGCTACGAATATGGGAAAGGTTTAGGAAAGATGCAGGAGGGTCGAGTGGAGCCAGTCATGGCAGTGGTCCTACCCAAACGAAAGTCTCTGGACGAATGTGCCGAGCTCACACAGAGACGCACCCAGAGCAAGGCGGCTAAAGATGGTACACAAACAGGCCGCCCAAAGAGACGCAGAAAGCCTCGGGGCGCCACCGGAGGGCGCCGTAACGTCTTTGACTTTCTCAACCACAAGCTAGGAGGCAAGAGCAGCGATCCTGCTGAGGGGGGTGCTGCGGCACTGTCAGCAGCATCGGGGGTGGAGGCCTACAGGGGAGGAACAAGCACCAAGAGGACTCTAAATGTGAAGCTGTTCCAGGCGTCTGAGAGGGTGTCGCAGACTGAGAGGGAGATCCAGAAACTGACTGAGTCACtcggcagacagacaggcagCTCCAGGGTGAAGCAGCTGGAAGAGAAGCTGTCAGCGGCCCGCAAGCTGCTGGCCCAGCAGAAGGCCCAGGAGCTGTCCATCCAGAGAGAAAACAGGAAGGCTGACACACACAAGAAGATGACTGAGTTTTAAGCTCAATTCTCTCAAAGACTTGGGGGATGAATGGAAGCACTGCTTGCCTGAAATGAACTTTTGTCCTTTTGCCTGTTGTCAGTTATTTGCAACTCTGTTTAATTTTTAAAGCATTATTTCTCAACGGCATCATGGATTCGAGCTGGCAGTGGTGCCCAGTATATGGAGAATGCAGCAATTGCTGAAGATTCTCTGcttctcattttatttttaaggactgagcagatttttttgtttgaacAGCTGTTTGGCTTCAAATTGTACAGTTCACAATAATGTTACAAACTAAATTCGATTTGTGATGAACA

Function

symbol description
zgpat Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of epidermal growth factor-activated receptor activity; negative regulation of transcription, DNA-templated; and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZGPAT (zinc finger CCCH-type and G-patch domain containing).

NR:

description
zinc finger CCCH-type with G patch domain-containing protein

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800561.1 True 2032 mRNA 0.49 7 30897279 30902908
XM_039800562.1 False 1883 mRNA 0.50 6 30896977 30902027

Neighbor

gene id symbol gene type direction distance location
tmco4 tmco4,LOC102793724 coding downstream 238085 30650112 ~ 30658892 (-)
csde1 csde1,LOC102790132 coding downstream 266429 30612093 ~ 30630548 (-)
ampd1 ampd1 coding downstream 293824 30587509 ~ 30603153 (-)
dennd2c NA coding downstream 311325 30563560 ~ 30585652 (-)
LOC120559739 rnf223 coding downstream 349895 30541501 ~ 30547082 (-)
LOC120559110 vstm2l,LOC101479893,LOC102782703 coding upstream 25335 30928243 ~ 30981176 (-)
ctnnbl1 ctnnbl1 coding upstream 85166 30988074 ~ 31057576 (-)
LOC120558334 NA coding upstream 210852 31113760 ~ 31125091 (-)
e2f1 e2f1,LOC102780950 coding upstream 225320 31128228 ~ 31141874 (-)
itchb itch,LOC100697163,LOC101474118,LOC102781723 coding upstream 259611 31162519 ~ 31191356 (-)
G54470 NA non-coding downstream 7759 30889018 ~ 30889218 (-)
G54444 NA non-coding downstream 111180 30785093 ~ 30785797 (-)
G54414 NA non-coding downstream 190216 30655670 ~ 30706761 (-)
G54407 NA non-coding downstream 261627 30633932 ~ 30635350 (-)
LOC120559660 NA non-coding downstream 277087 30619266 ~ 30619890 (-)
G54508 NA non-coding upstream 161833 31064741 ~ 31064972 (-)
G54509 NA non-coding upstream 195072 31097980 ~ 31098185 (-)
G54549 NA non-coding upstream 332339 31235247 ~ 31235474 (-)
G54567 NA non-coding upstream 444373 31347281 ~ 31350577 (-)
G54599 NA non-coding upstream 588648 31491556 ~ 31527860 (-)
tafa5l LOC102786421,LOC104919510,LOC100700110,LOC103384901,LOC106518908,LOC107086703 other downstream 824278 29971196 ~ 30072699 (-)
cdk11b LOC103366252,LOC101466870,LOC100697195 other downstream 1131104 29752661 ~ 29765873 (-)
clcnk clcnka,LOC104952128,LOC102786725 other downstream 1404002 29474503 ~ 29492975 (-)
LOC120559896 slc25a45 other downstream 1541093 29350078 ~ 29355884 (-)
ajap1 ajap1 other downstream 1867656 28971286 ~ 29029321 (-)
LOC120558955 LOC104919264,LOC102777709,LOC100695043,LOC102209489,LOC103373809,LOC103152775,LOC101470785,LOC106963186 other upstream 1390034 32292942 ~ 32323275 (-)
LOC120559593 plxnb1,LOC103373813,LOC107100289 other upstream 1688075 32590983 ~ 32666459 (-)
G54756 LOC107088573,LOC106566972 other upstream 1864449 32767357 ~ 32773486 (-)
G54834 NA other upstream 1977285 32880193 ~ 32887290 (-)
zgc:158296 NA other upstream 2063727 32966635 ~ 32971163 (-)

Expression


Co-expression Network