LOC120559110 (vstm2l,LOC101479893,LOC102782703)


Basic Information

Item Value
gene id LOC120559110
gene name vstm2l,LOC101479893,LOC102782703
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 30928243 ~ 30981176 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800564.1
CGACTGAACGGTAGCACAGCCTCAGTCAGTCTGCTGGCATACAGAGAGGCTGCAGCAGCTTCTTCGTTTCTTTATTCTGCACACAGTGATCCCACTGTCTTCCTTGCCTGAACAAGTAAcctggattaaaaaaagaaaaaaaaagaaagaagagaataaaagaaatattttcGACGTGCACTCCACCCGATGTGAAAAAGTCAAAGAGGGTAAAGGagaacagataaaaacagaagAGAAATGGGAGCGTTCAGAGTGCTGCTGGGGAGTTTACATTACATCGGACTCTACATGCAACTTAGTGTCTCCACAACGCAAGCTGGACACGGCGAGGTGGAGAACCACATCTCTGGGAACGCCATGTTCACAGAGGTGCCTCATGATATGAGTGCTCAGAGAGGTCAGGACGTGGAGATGGCCTGCTCCTTCAGAGGGGCGGGAACGCCCTCGTATTCACTGGAGATCCAGTGGTGGTACATCAGGAACCACCTGGACTGGACGGACAGACAGCCCTGGACAACCAATGAAgTGGCTCCTGAGGAGAAGATGCCAAAAGATGCTACAAAGATAAGCGTTGTGAAGGTTGTAGGAAGCAACATCTCCCATAAACTCCGCCTCTCCCGGGTCAAGCCGTCTGATGAGGGCACATACGAGTGCCGTGTCATCGACTTCAGCGATGTCGCAGGTGCCCGCCACCACCGCGTCAGAGCCTACCTGCAGGTGGTTCAAGAGAGCGACATCATCGACAGTAACCACAACGACAATTTCGAGGCCCTGGACGATACCAAAGGAGGAGTGGCGTTTGTCGACGGGGACGGCATGGAGTCTCACGGTGGCGCCAAAGTGCATGCTCATGGCCATCACCAGAATCACGGGCACCCCCAGGAGCACGGCAAGCGGCCTTCATCGCCGGCCCACCACGGCCACAGCCACAGCGGCATCAGTCAGCAGAACAAGGCAGGCAGAGACCTGAAGAAGAGGGACGTAGACAGTAACCATAGCGACAATGACTGCACCAACGAGCCAAGCTGTGCACTGTAGATGTTGGCTTATTACACCTGAGTGATAGATTACACAAGGATTGCATAACATGATGTGTGTTACAGCATAAAAAGCTATTCTTCCCACACAGTGCAAGCGTGTGCACAAATCCAGAATCCCtagaaatgtacagtatggCTTGTTCAGAGCACAGTGCTGTAAACTGTGCTGGGGAATGTAGCTTTTTCTTGCTGTGCATGGGTCTGGGTTGGACTGCTCACTGGGGAGTGCTCACTGGGGAGGTTGGACACAAGGGGAGCTGATGTGTAGATCTAAGCAGCTCCACTGGTTCTGGTCACAGcaccaacaaaaaaagaaagatttgtCTTACTATCAACCCATGCTCTGTTCCACTCTTGTACTTTAGATACTGTAAATGACACAACCCTGCTTTCAGGCTCATACTTCTTCCACTGCCTTACTCTCTCATTTGATACACCCTCAGAAAAAAAGTATGTTATACCTTTTTCTAACTGGGTCTGTGcccagtaaaagaaaatgttccTTTTATTCTGAGTGTGCACTGAATGAAACTAAACTGTCTGTAATTCTTACCTGGAAATCTTGTCGAGTCTGATTCCTTAGCTTTTTATGTATAGCACTAGCTTCCTTGCATCTTTTTGTGTGTTCAAATAATGGACATGAATATGGTGCAAAATTTGTAAACTGCAATTTATTCTGTGTTTACTCGCAGGGGGAAAGAAATATGCTTTTTTCAGCAGAAACTCATCAAGGTCCCAGAGCAGCAGTGCTCATCAAGGACAGATACAGCCTCAATTTAGTTGAGTTGGAGTTAATACAGTGGCAGTGTGGGATTTCTTCCACATTTGTGTGCTTTTCAAACACAGCACATCACAGGCTTTATTTTCCCCACAGCACATTTGAGCTTATAAATTTGcagctcaacagaaaacatgattTTTCTTCACCTCTCGTGCTGCAGGTTTAATCCATCCATGGCTATTTAGGCTGAGAGAAATTAATCGTATTGATCAATCCTGTTATTCCATGTGGACTCCATCTGTTTGGAAAGCCATAAATAGATCAAAGTCTGTGCcactaaattaaaacaaatctgacTTTTTGTGCCTCTGAATCCACTAAAGATCATTGGAAGAAATGTGAACTTGCTGCAAGATACATTTTGGAAAGAGCAGTGCTGTATTCATATACCAGCTTAGTTCCCTTATTCCGATGCTCTGGCCCATTGCTCATCAATCATTGAAAAAGCCTCAATCCTCTCCACTACAAGCCTCTAATCCACTCTGTATATATGACTGtataatatgaaacaaattgagTGCATGTTCAGTAATTTTCTTAAAACTTTTTCAACCAACCATACACAAAGACAGTGTGttaatatttttgtcatttatttgtttgGTTCATTTAATAAAAGACATTCCATTCTGTTCTGAATCTTTTTACTTTAGAAGTCCTATCAAATAGATCTTATGTTTTCCAAAGCAGTTTGCTGTTGCTTCACTGCTCTCCAGAAGTGCTGTACAGACAGATGAATGACATGTTCTCTTCATAGCTGCTCAGAAAATGTATCTTAGTACTTAAGCAGTGTTTCTTaaactactgtactgtatgtacagggCCGCAAACATGAGTGTTGCCGTGTTTTAATGAGCTTGAACGTGGGGATTCATTTTGTGCCGTTTGGGACTTGCTCTGAAAGGATTTAAGAGGCCATTTTACTTCTGCCAATTTTGTAACTCGTTGATAATCTCTTTGCTTAGAGGCTTGTATGAAGCGCACAATACTTCACTCTGAAGGGATCAAATGGGACAAAGTGAATGTGGGTAACATACTGGATAAAAAGCCTTGAGCTGTGATGGCGAGAAGAGGGAAATGTTAGTGAAACACGGAAATTGGCTGCCCATACCGCCTCAAAATATAGTCTGTCTCAAGGCTATGCTGTATTATCCATCAGTGGAACTACAGCGCTCCTGTTATTGTTGGCAGTCCCAGCAGACTAAAGAGGGTACTTTAGTGCACGGAGGAGTGATCAGtgggactgttttttttttttcttccaacgAGTAACtttgatttgttgttttgtaaagAAGAGATcacggttaaaaaaaaaaaagaagaaaaatgtacatttcttCTAGAATGTTTGGTCTCACACTAAGTGTATGGCTTtatcaaatgaaataaattgtaTATGAAACAGTGA

Function

symbol description
vstm2l Predicted to enable cell-cell adhesion mediator activity. Predicted to be involved in axon guidance; dendrite self-avoidance; and homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to act upstream of or within cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in axon and plasma membrane. Orthologous to human VSTM2L (V-set and transmembrane domain containing 2 like).

NR:

description
V-set and transmembrane domain-containing protein 2-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800564.1 True 3235 mRNA 0.44 4 30928243 30981176

Neighbor

gene id symbol gene type direction distance location
zgpat zgpat,LOC102796033 coding downstream 25335 30896977 ~ 30902908 (-)
tmco4 tmco4,LOC102793724 coding downstream 269351 30650112 ~ 30658892 (-)
csde1 csde1,LOC102790132 coding downstream 297695 30612093 ~ 30630548 (-)
ampd1 ampd1 coding downstream 325090 30587509 ~ 30603153 (-)
dennd2c NA coding downstream 342591 30563560 ~ 30585652 (-)
ctnnbl1 ctnnbl1 coding upstream 6898 30988074 ~ 31057576 (-)
LOC120558334 NA coding upstream 132584 31113760 ~ 31125091 (-)
e2f1 e2f1,LOC102780950 coding upstream 147052 31128228 ~ 31141874 (-)
itchb itch,LOC100697163,LOC101474118,LOC102781723 coding upstream 181343 31162519 ~ 31191356 (-)
trnaq-uug_1 NA coding upstream 245884 31227060 ~ 31227131 (-)
G54470 NA non-coding downstream 39025 30889018 ~ 30889218 (-)
G54444 NA non-coding downstream 142446 30785093 ~ 30785797 (-)
G54414 NA non-coding downstream 221482 30655670 ~ 30706761 (-)
G54407 NA non-coding downstream 292893 30633932 ~ 30635350 (-)
LOC120559660 NA non-coding downstream 308353 30619266 ~ 30619890 (-)
G54508 NA non-coding upstream 83565 31064741 ~ 31064972 (-)
G54509 NA non-coding upstream 116804 31097980 ~ 31098185 (-)
G54549 NA non-coding upstream 254071 31235247 ~ 31235474 (-)
G54567 NA non-coding upstream 366105 31347281 ~ 31350577 (-)
G54599 NA non-coding upstream 510380 31491556 ~ 31527860 (-)
tafa5l LOC102786421,LOC104919510,LOC100700110,LOC103384901,LOC106518908,LOC107086703 other downstream 855544 29971196 ~ 30072699 (-)
cdk11b LOC103366252,LOC101466870,LOC100697195 other downstream 1162370 29752661 ~ 29765873 (-)
clcnk clcnka,LOC104952128,LOC102786725 other downstream 1435268 29474503 ~ 29492975 (-)
LOC120559896 slc25a45 other downstream 1572359 29350078 ~ 29355884 (-)
ajap1 ajap1 other downstream 1898922 28971286 ~ 29029321 (-)
LOC120558955 LOC104919264,LOC102777709,LOC100695043,LOC102209489,LOC103373809,LOC103152775,LOC101470785,LOC106963186 other upstream 1311766 32292942 ~ 32323275 (-)
LOC120559593 plxnb1,LOC103373813,LOC107100289 other upstream 1609807 32590983 ~ 32666459 (-)
G54756 LOC107088573,LOC106566972 other upstream 1786181 32767357 ~ 32773486 (-)
G54834 NA other upstream 1899017 32880193 ~ 32887290 (-)
zgc:158296 NA other upstream 1985459 32966635 ~ 32971163 (-)

Expression


Co-expression Network