LOC120559111 (LOC104966951,LOC104926426,LOC101067761,LOC103384493)


Basic Information

Item Value
gene id LOC120559111
gene name LOC104966951,LOC104926426,LOC101067761,LOC103384493
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 26366090 ~ 26374329 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800565.1
ACAGTCAGCTTGACACATGAGTGCTCAGCCtagcacgcacacaaacacacatacaaacacacacacaaaagcatagATAAGTATGTGAGTATACAGACATATGCATCACACCCGAGCCTAAAATCCTTTTGGAAATCACTGAAAGATGCTACACCGAAAGATGCTACAGAGGGAATAGAGAAAAGGCCCAGACTGTGCGAGTGTTGACACATAATTCAGGGGGCCAGAAGTGAGGAGACAAGTTGTTCGGCTGGTTTGTCAGACTCAGACCCACTCCAGTCATCGGCAGCAGGTGGGGCAGTACTGACATCCACCAAACATCATGGACCAggaggAAGACAAAAACTCTGTGGATTTCCATGACAACCCTCCAGCTCCTGACAACGTAGTTAGAGAGGACGGAGACACAGTCTATTTCATATATGatgaggaggtggaggtggaggagaaggaaccagaacctcctcctcctgttgtcCGAATCAACGACAAACCCCACAAGTTCAAGGACCACTACTGCAAAAAACCCAAGTTCTGTGACGTCTGCGCTCGCATGATAGTCTTGAACAACAAGTTTGCTCTGAGGTGTAAAAACTGCAAGACCAACATCCACCACTCATGTCAGTCCTATGTTGAGTTCCAGAAGTGCTTTGGCAAAATTCCACCTGGCTTCAGAAGGGCCTACAGCTCCCCGCTGTACAGCAGTGATATACCAGATCCAAACAACCCGAACCGGAACGACCCAGTCTTTGACACCCTGCGTGTTGGTGTCATCATGGCAAATAAGGAGCGcaaaaagaatgaaaatgaCAAGAAAAATCTGATGGTGAtgatggaggaagaagaagaggagaaccAACGGCCCAAAGAGAacgaggagggaggagaagGGAAGCCTGAtgataagaaggagaaaggaggagaCAAAGCAGATGACAAAAGTAAAGGTACATTCTCCCAGACCCACTATTACCTGGCTCTCTACCGCTTCAAGGCCATAGAGAAAGACGATCTTGACTTCCAccCTGGTGATCGTATCACAGTACTCGATGACTCCAATGAAGAGTGGTGGAGGGGAAAGATGGGGGACAAGTCGGGCTACTTCCCCACCAACTACCTCATAAAAGTGCGTGCATCAGAAAGAGTTTTTAAGGTGTTACGTTCCTTCGTAGGGAACAGAGAGATGGGACAAATCACACTGAAAAAAGATCAGATTGTGGTGAAGAAAGGAGACGAGAAAGGCGGCTACTTGAAGGTCAGCACTGGACGCAAGCTGGGCTACTTCCCTGCTGATCTGCTGGAGGAGATCACTGTGACATAAAAAGCACGACATGCAATGAAAGAGCCTGCAACACACTTTAAACAGTAGCAAAGATTGGAGACATCACTGTTCAGAAGATCCTCCTGATCTTTTCTATATTTGTTACCCAAAACAAGATATCAAAATGAGCTCTTTTTGTGTCTGTCACAGCAGAAATGTATTTCCTGTGATGTATCTGTGACTTTGACACAAAGTGAAGCATGAGAAAGGAGAGAATAATGATTCATACGTACAGGCTTCAAAAGTAactttttcgtctaccagccaaatggctaatgaatgttcaaatattaccagccactcaGATTAcaattgggttttttggctggtgagtgaagcaaatctaccagccacttgcatatttcaccagcatttggctggtaaacggtgccaATTTGGAACCCTGCATACGTACATTAAAATATTTGTAAGAGGCAATCAGGTGATGTATTGGCTTTGTCGTGACTAGCATGGTAAAACAAAGGTCAGATCCTTTAAGTTACTACAGCGATTATAGCTAGCATAAAGGAGATCCATTGATACAACCTGGAGAGCTTGAAAGAGGTCATAAATGAATGCATTATTGATATGAAGTCAGATAATTAACAAAGGCTTGATATAAGATTCAATTATATATTTCTAAATCAATTTGACAAAGCGGACAAAGAGAGTTCATGTTACATCTCACAGCAGATTATTTAAGTTTGGCCATAACAAAACCTCTGAGTACCCTTCATTGTACTTTCAGGCTAATGAACCAATTCCACTGCTCATTTAGGTATGATCCGATTCAAACATTTTGTTTGGTTATAATTTAtctgttttaaaaatattattatataagtaTTGTAATGATAGTTAATATTGTCTAATAAAATATCTAAAGACTTGTTTGCTGCCATTTTCAAGGCTCTCTACGTCCTTTATAGTTACTTATAAATACTCTAGGGTccaaatccatttcaacatgtACATTATGTTAACAAAAAGAGTGAACAGTGCAAAGACAATTTCCTAGATTGGGCTTGTACAAAATTTCACGTTAACCTGATAAACTGAAGAAAGGCTATATGAAAACAAATTGtgtataaaaacagaaatactgCTCAGAATGGTCTCAAATGTTTGCACTGTTTGCTGCTAATAAAATTAGCTTGAATTGCCCGAAGTTTAAATGTTTCAAAAATGAAACCTGAAGTGCACTTAAAAACCTAATGTGAAACTTCCTTTAACATGTTTCCAAAAAGGCAATATGGtattcaaaaacaaaagaagagaGATCAGAGGGGCCTCTCTTGATGTGCTGTAGTTAGTAGCACTTGTTACTGTTGCTGCTAAAGTTATCCATAGCTTACAATGGCGTTTTAACTCACATCATATCCTGTATTTATGTTAAAACTGGCAACTGCAATCCAGTTAAAATTGAGTTTGAAGTTGGAGTGGGATTATCAACTCTGGGCAGAAAAAAATCATGTGACCCAGCAGCAAATATGtttctaaataaaatgcatCAAAATAG
>XM_039800566.1
AACAGTCAGCTTGACACATGAGTGCTCAGCCtagcacgcacacaaacacacatacaaacacacacacaaaagcatagATAAGTATGTGAGTATACAGACATATGCATCACACCCGAGCCTAAAATCCTTTTGGAAATCACTGAAAGATGCTACACCGAAAGATGCTACAGAGGGAATAGAGAAAAGGCCCAGACTGTGCGAGTGTTGACACATAATTCAGGGGGCCAGAAGTGAGGAGACAAGTTGTTCGGCTGGTTTGTCAGACTCAGACCCACTCCAGTCATCGGCAGCAGGTAAAGGACTCGCCCACAGACAGATTAACCCACACTCTGAATGTTGTCATTTCTTCTCTGAGCCGCGTGAATTTTGACAAAAGGTGGGGCAGTACTGACATCCACCAAACATCATGGACCAggaggAAGACAAAAACTCTGTGGATTTCCATGACAACCCTCCAGCTCCTGACAACGTAGTTAGAGAGGACGGAGACACAGTCTATTTCATATATGatgaggaggtggaggtggaggagaaggaaccagaacctcctcctcctgttgtcCGAATCAACGACAAACCCCACAAGTTCAAGGACCACTACTGCAAAAAACCCAAGTTCTGTGACGTCTGCGCTCGCATGATAGTCTTGAACAACAAGTTTGCTCTGAGGTGTAAAAACTGCAAGACCAACATCCACCACTCATGTCAGTCCTATGTTGAGTTCCAGAAGTGCTTTGGCAAAATTCCACCTGGCTTCAGAAGGGCCTACAGCTCCCCGCTGTACAGCAGTGATATACCAGATCCAAACAACCCGAACCGGAACGACCCAGTCTTTGACACCCTGCGTGTTGGTGTCATCATGGCAAATAAGGAGCGcaaaaagaatgaaaatgaCAAGAAAAATCTGATGGTGAtgatggaggaagaagaagaggagaaccAACGGCCCAAAGAGAacgaggagggaggagaagGGAAGCCTGAtgataagaaggagaaaggaggagaCAAAGCAGATGACAAAAGTAAAGGTACATTCTCCCAGACCCACTATTACCTGGCTCTCTACCGCTTCAAGGCCATAGAGAAAGACGATCTTGACTTCCAccCTGGTGATCGTATCACAGTACTCGATGACTCCAATGAAGAGTGGTGGAGGGGAAAGATGGGGGACAAGTCGGGCTACTTCCCCACCAACTACCTCATAAAAGTGCGTGCATCAGAAAGAGTTTTTAAGGTGTTACGTTCCTTCGTAGGGAACAGAGAGATGGGACAAATCACACTGAAAAAAGATCAGATTGTGGTGAAGAAAGGAGACGAGAAAGGCGGCTACTTGAAGGTCAGCACTGGACGCAAGCTGGGCTACTTCCCTGCTGATCTGCTGGAGGAGATCACTGTGACATAAAAAGCACGACATGCAATGAAAGAGCCTGCAACACACTTTAAACAGTAGCAAAGATTGGAGACATCACTGTTCAGAAGATCCTCCTGATCTTTTCTATATTTGTTACCCAAAACAAGATATCAAAATGAGCTCTTTTTGTGTCTGTCACAGCAGAAATGTATTTCCTGTGATGTATCTGTGACTTTGACACAAAGTGAAGCATGAGAAAGGAGAGAATAATGATTCATACGTACAGGCTTCAAAAGTAactttttcgtctaccagccaaatggctaatgaatgttcaaatattaccagccactcaGATTAcaattgggttttttggctggtgagtgaagcaaatctaccagccacttgcatatttcaccagcatttggctggtaaacggtgccaATTTGGAACCCTGCATACGTACATTAAAATATTTGTAAGAGGCAATCAGGTGATGTATTGGCTTTGTCGTGACTAGCATGGTAAAACAAAGGTCAGATCCTTTAAGTTACTACAGCGATTATAGCTAGCATAAAGGAGATCCATTGATACAACCTGGAGAGCTTGAAAGAGGTCATAAATGAATGCATTATTGATATGAAGTCAGATAATTAACAAAGGCTTGATATAAGATTCAATTATATATTTCTAAATCAATTTGACAAAGCGGACAAAGAGAGTTCATGTTACATCTCACAGCAGATTATTTAAGTTTGGCCATAACAAAACCTCTGAGTACCCTTCATTGTACTTTCAGGCTAATGAACCAATTCCACTGCTCATTTAGGTATGATCCGATTCAAACATTTTGTTTGGTTATAATTTAtctgttttaaaaatattattatataagtaTTGTAATGATAGTTAATATTGTCTAATAAAATATCTAAAGACTTGTTTGCTGCCATTTTCAAGGCTCTCTACGTCCTTTATAGTTACTTATAAATACTCTAGGGTccaaatccatttcaacatgtACATTATGTTAACAAAAAGAGTGAACAGTGCAAAGACAATTTCCTAGATTGGGCTTGTACAAAATTTCACGTTAACCTGATAAACTGAAGAAAGGCTATATGAAAACAAATTGtgtataaaaacagaaatactgCTCAGAATGGTCTCAAATGTTTGCACTGTTTGCTGCTAATAAAATTAGCTTGAATTGCCCGAAGTTTAAATGTTTCAAAAATGAAACCTGAAGTGCACTTAAAAACCTAATGTGAAACTTCCTTTAACATGTTTCCAAAAAGGCAATATGGtattcaaaaacaaaagaagagaGATCAGAGGGGCCTCTCTTGATGTGCTGTAGTTAGTAGCACTTGTTACTGTTGCTGCTAAAGTTATCCATAGCTTACAATGGCGTTTTAACTCACATCATATCCTGTATTTATGTTAAAACTGGCAACTGCAATCCAGTTAAAATTGAGTTTGAAGTTGGAGTGGGATTATCAACTCTGGGCAGAAAAAAATCATGTGACCCAGCAGCAAATATGtttctaaataaaatgcatCAAAATAG

Function

NR:

description
PREDICTED: SH3 and cysteine-rich domain-containing protein 3-like

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K23713 STAC3; SH3 and cysteine-rich domain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800565.1 False 2840 mRNA 0.41 13 26366091 26374329
XM_039800566.1 True 2924 mRNA 0.41 13 26366090 26374329

Neighbor

gene id symbol gene type direction distance location
LOC120559018 NA coding upstream 91302 26266807 ~ 26274788 (+)
LOC120559565 NA coding upstream 106136 26247997 ~ 26259954 (+)
rprd1b rprd1b coding upstream 118808 26236839 ~ 26247282 (+)
her12 LOC101486328 coding upstream 142247 26222495 ~ 26223843 (+)
LOC120558413 LOC103372574 coding upstream 148008 26216514 ~ 26218082 (+)
LOC120559112 shmt2,LOC103362774,LOC102296343,LOC102798994 coding downstream 9262 26383591 ~ 26393733 (+)
LOC120559752 slc32a1,LOC103362770,LOC104926430,LOC101482923,LOC102798107,LOC102295106 coding downstream 49784 26424113 ~ 26427752 (+)
bpifcl NA coding downstream 54149 26428478 ~ 26435464 (+)
LOC120559781 chmp4b,LOC103362760,LOC106511320 coding downstream 165571 26539900 ~ 26546310 (+)
eif2s2 eif2s2 coding downstream 172827 26547156 ~ 26553116 (+)
G53239 NA non-coding upstream 1253 26364442 ~ 26364837 (+)
G53223 LOC103362778,LOC108236819,LOC101165391 non-coding upstream 35462 26330084 ~ 26330628 (+)
G53222 NA non-coding upstream 36474 26325919 ~ 26329616 (+)
G53221 NA non-coding upstream 40622 26325221 ~ 26325468 (+)
G53109 NA non-coding upstream 266455 26096359 ~ 26099635 (+)
G53248 LOC101164642,LOC104966947,LOC100690915,LOC102195969,LOC104926428,LOC101062277 non-coding downstream 22870 26397199 ~ 26402428 (+)
LOC120559830 NA non-coding downstream 40556 26414885 ~ 26423059 (+)
G53285 NA non-coding downstream 252967 26627296 ~ 26631607 (+)
G53418 NA non-coding downstream 446332 26820661 ~ 26823621 (+)
G53445 NA non-coding downstream 615500 26989829 ~ 26993682 (+)
G53232 LOC104966952,LOC103362776,LOC102800046,LOC102208894 other upstream 12627 26352460 ~ 26353463 (+)
G53096 ybx1 other upstream 289426 26071585 ~ 26076664 (+)
tprg1l tprg1l,LOC102784883,LOC106513028 other upstream 617769 25743589 ~ 25748321 (+)
G52871 LOC104956590 other upstream 1408760 24953442 ~ 24957330 (+)
LOC120559118 LOC102791662 other upstream 1420770 24940795 ~ 24945320 (+)
LOC120559113 LOC108236696,LOC104966950,LOC103362773,LOC103384494 other downstream 3863 26378192 ~ 26383047 (+)
atp5f1e NA other downstream 68721 26443050 ~ 26444890 (+)
LOC120559571 vapb,LOC100711919,LOC102796136,LOC101481364 other downstream 109203 26483532 ~ 26537351 (+)
gnas gnas,LOC102796627,LOC104936173 other downstream 116113 26490442 ~ 26523888 (+)
G53305 NA other downstream 425767 26800096 ~ 26800746 (+)

Expression


Co-expression Network