LOC120559115 (LOC104919424,LOC101480694)


Basic Information

Item Value
gene id LOC120559115
gene name LOC104919424,LOC101480694
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 24838584 ~ 24919766 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800571.1
TCCCGTTTATTATCGGCAGAGGTCGCATGGCAGAGGGAAGTCCAACCACTTCTGTACTGGAACCAATGCAAGAATATGCACCTCCATAACAAAGCCTGTATGGATTCCTGAGAGCAGTGAGAAAACAGAGGCTGCACATGTAGGCAATGGGCTGCTGTTCAGCcgtagaaaaaaaatctaaaaaagagAGGACCTAAGTTGGAGGTTTGCTTTTATTTGTTCTGGAACAACGGGATAGTTTTGCCAACACGTGTGTATCCATGAAATTTGTTCTCTCCGttttgagtgagtgagtgagtgtttcGCATCCTGGTGCGGGGCTCTGGAGAGGACTGCGCATCATCAGAGTTGGTGCCGAAGTTCGGCCGCGAACGGATGTGAGGGAAGAGTGTACAGAGTAAAACTCCCCCACTTCTTTTTTGTCTCTCCTGCTTCGGCGTTGTGTTTGCTGAGACAATAGTGAGTCAAAGACGCTGAAAGTGATTTCATGCCTTCAGTCTCGCACAACCTGAGATGGACGTGAGATTTTACCCTGCGCCCCCGGCAAATGTGGGTTCATGCTCCCTACCGACTGATCCAAGTTGTCTGAGCTCGTTGGACTATTACCACTCGAACAAGGCCCGGTACAGTGTGGGTGAACGAGGGGTTAGGCTCCACACTGCCCACCCTCCAGGCATCAATCCAGCTAGGAAAAGACTGCCCACTGCTGTGTTTGATGGTGACAACATGTACATGAATGACAATAACCAAGAGTTTCGGTCACCAAACCAGAACTACTCCGGTCAAGGCAGAGGCAGCAgtggcggaggaggaggagcaggggaTGAAGACTACGAGATCCCCCCCATCACACCCCCCAACCATGCCGACCCCTCTCTGCTGCACCTCATGGAGCACGAGTCAGGTTACCCCTTCCACTCCCTGCCTCACAACGGCCTGCTCAACACCTACTCCTACCCTGAGCTGCCTGCCCTCATGATGTCCAACATGCTGGGTCAGGACACCCACCTCCTCACGGGGCCTATGCACTCTATAAGCAGTGAGAAGCGGGCCTCGGCAGAAATGATGAAGCCCAAACCCAAAcctcaaaagaagaagaagaagaaggaccCCAACGAGCCACAGAAACCTGTGTCGGCCTACGCGCTCTTCTTCAGAGACACCCAGGCGGCCATCAAGGGCCAAAACCCCAATGCCACCTTTGGGGATGTCTCCAagattgtggcctccatgtggGACAGCCTAGGAGAGGAACAGAAgcagGGGTACAAGAGGAAAACCGAGGCGGCTAAGAAAGAGTACCTGAAAGCCTTGGCCGCGTACCGAGCCAGTCTGGTTTCCAAGACATACAATGACCCTGAACCAAAAAGTGCCCAGCAGACCAGCCAGCCCTCCCACATGCTGCCCCCGAAGCAGCCGCTGTACAGCGTGCCCCCCCAGCCCTCCTCACCCTATCTAGGCCCGCCGGGCTCCTTCCCCCTGTCAGACCTCCAGAGCTACGCAGGCCCGCCCCGCCACACCCTGGCCCAGACCCTCAGCCAATCCCAGATGCTGCCACCCAGCATGAGTGCCTCTCCCCCATCTCCCTTCCAGATCAGCCCACCTCTGCACCCCCACGCCCAACTCTCCCTGCATCAGAGCTCCCTGCTCAACCAGCCAATCCGCATGCAGCAGTCGCAGCCAATCATCTCACACCAAATGGGGCTCCAGGCGCCTCTGCATTCCCCTCCTCTCAGCCAACAGGGATTCTCCCATATTCAGGCTGATTACCAGAACAGTGTCGGGGGCTCACAGTCTCCAGGGGCCCCTAACCCAGGGCACGGCCAGAACCCTGACTGGGACAGCGAGTACTGCAACAGGGACTGTGGACCCAACCACTGCAAcaGTGGCATGGGAGCTCCGGACAAGCCTCTCTACCTCACTTGAAGTTGAAAGACCTCCAAATGTCAGACTCCAGGGAGCGTTCCACCATAACAACAACGTCATCGATGTATCTGCTTTTAcaccattttgtttttctttttttttgtgacggATTTCGAAAATCCCAAAGACTGCTACAGTAACTTCACCTATTTGCCAAGCACTTAGATCGGCCAGAAGCCTGAGGCACTTCTCTTGCA
>XM_039800572.1
TCCCGTTTATTATCGGCAGAGGTCGCATGGCAGAGGGAAGTCCAACCACTTCTGTACTGGAACCAATGCAAGAATATGCACCTCCATAACAAAGCCTGTATGGATTCCTGAGAGCAGTGAGAAAACAGAGGCTGCACATGTAGGCAATGGGCTGCTGTTCAGCcgtagaaaaaaaatctaaaaaagagAGGACCTAAGTTGGAGGTTTGCTTTTATTTGTTCTGGAACAACGGGATAGTTTTGCCAACACGTGTGTATCCATGAAATTTGTTCTCTCCGttttgagtgagtgagtgagtgtttcGCATCCTGGTGCGGGGCTCTGGAGAGGACTGCGCATCATCAGAGTTGGTGCCGAAGTTCGGCCGCGAACGGATGTGAGGGAAGAGTGTACAGAGTAAAACTCCCCCACTTCTTTTTTGTCTCTCCTGCTTCGGCGTTGTGTTTGCTGAGACAATAGTGAGTCAAAGACGCTGAAAGTGATTTCATGCCTTCAGTCTCGCACAACCTGAGATGGACGTGAGATTTTACCCTGCGCCCCCGGCAAATGTGGGTTCATGCTCCCTACCGACTGATCCAAGTTGTCTGAGCTCGTTGGACTATTACCACTCGAACAAGGCCCGGTACAGTGTGGGTGAACGAGGGGTTAGGCTCCACACTGCCCACCCTCCAGGCATCAATCCAGCTAGGAAAAGACTGCCCACTGCTGTGTTTGATGGTGACAACATGTACATGAATGACAATAACCAAGAGTTTCGGTCACCAAACCAGAACTACTCCGGTCAAGGCAGAGGCAGCAgtggcggaggaggaggagcaggggaTGAAGACTACGAGATCCCCCCCATCACACCCCCCAACCATGCCGACCCCTCTCTGCTGCACCTCATGGAGCACGAGTCAGGTTACCCCTTCCACTCCCTGCCTCACAACGGCCTGCTCAACACCTACTCCTACCCTGAGCTGCCTGCCCTCATGATGTCCAACATGCTGGGTCAGGACACCCACCTCCTCACGGGGCCTATGCACTCTATAAGCAGTGAGAAGCGGGCCTCGGCAGAAATGATGAAGCCCAAACCCAAAcctcaaaagaagaagaagaagaaggaccCCAACGAGCCACAGAAACCTGTGTCGGCCTACGCGCTCTTCTTCAGAGACACCCAGGCGGCCATCAAGGGCCAAAACCCCAATGCCACCTTTGGGGATGTCTCCAagattgtggcctccatgtggGACAGCCTAGGAGAGGAACAGAAgcagGGGTACAAGAGGAAAACCGAGGCGGCTAAGAAAGAGTACCTGAAAGCCTTGGCCGCGTACCGAGCCAGTCTGGTTTCCAAGACATACAATGACCCTGAACCAAAAAGTGCCCAGCAGACCAGCCAGCCCTCCCACATGCTGCCCCCGAAGCAGCCGCTGTACAGCGTGCCCCCCCAGCCCTCCTCACCCTATCTAGGCCCGCCGGGCTCCTTCCCCCTGTCAGACCTCCAGAGCTACGCAGGCCCGCCCCGCCACACCCTGGCCCAGACCCTCAGCCAATCCCAGATGCTGCCACCCAGCATGAGTGCCTCTCCCCCATCTCCCTTCCAGATCAGCCCACCTCTGCACCCCCACGCCCAACTCTCCCTGCATCAGAGCTCCCTGCTCAACCAGCCAATCCGCATGCAGCAGTCGCAGCCAATCATCTCACACCAAATGGGGCTCCAGGCGCCTCTGCATTCCCCTCCTCTCAGCCAACAGGGATTCTCCCATATTCAGGCTGATTACCAGAACAGTGTCGGGGGCTCACAGTCTCCAGGGGCCCCTAACCCAGGGCACGGCCAGAACCCTGACTGGGACAGCGAGTACTGCAACAGGGACTGTGGACCCAACCACTGCAATGGCATGGGAGCTCCGGACAAGCCTCTCTACCTCACTTGAAGTTGAAAGACCTCCAAATGTCAGACTCCAGGGAGCGTTCCACCATAACAACAACGTCATCGATGTATCTGCTTTTAcaccattttgtttttctttttttttgtgacggATTTCGAAAATCCCAAAGACTGCTACAGTAACTTCACCTATTTGCCAAGCACTTAGATCGGCCAGAAGCCTGAGGCACTTCTCTTGCA
>XM_039800573.1
TCCCGTTTATTATCGGCAGAGGTCGCATGGCAGAGGGAAGTCCAACCACTTCTGTACTGGAACCAATGCAAGAATATGCACCTCCATAACAAAGCCTGTATGGATTCCTGAGAGCAGTGAGAAAACAGAGGCTGCACATGTAGGCAATGGGCTGCTGTTCAGCcgtagaaaaaaaatctaaaaaagagAGGACCTAAGTTGGAGGTTTGCTTTTATTTGTTCTGGAACAACGGGATAGTTTTGCCAACACGTGTGTATCCATGAAATTTGTTCTCTCCGttttgagtgagtgagtgagtgtttcGCATCCTGGTGCGGGGCTCTGGAGAGGACTGCGCATCATCAGAGTTGGTGCCGAAGTTCGGCCGCGAACGGATGTGAGGGAAGAGTGTACAGAGTAAAACTCCCCCACTTCTTTTTTGTCTCTCCTGCTTCGGCGTTGTGTTTGCTGAGACAATAGTGAGTCAAAGACGCTGAAAGTGATTTCATGCCTTCAGTCTCGCACAACCTGAGATGGACGTGAGATTTTACCCTGCGCCCCCGGCAAATGTGGGTTCATGCTCCCTACCGACTGATCCAAGTTGTCTGAGCTCGTTGGACTATTACCACTCGAACAAGTTTGATGGTGACAACATGTACATGAATGACAATAACCAAGAGTTTCGGTCACCAAACCAGAACTACTCCGGTCAAGGCAGAGGCAGCAgtggcggaggaggaggagcaggggaTGAAGACTACGAGATCCCCCCCATCACACCCCCCAACCATGCCGACCCCTCTCTGCTGCACCTCATGGAGCACGAGTCAGGTTACCCCTTCCACTCCCTGCCTCACAACGGCCTGCTCAACACCTACTCCTACCCTGAGCTGCCTGCCCTCATGATGTCCAACATGCTGGGTCAGGACACCCACCTCCTCACGGGGCCTATGCACTCTATAAGCAGTGAGAAGCGGGCCTCGGCAGAAATGATGAAGCCCAAACCCAAAcctcaaaagaagaagaagaagaaggaccCCAACGAGCCACAGAAACCTGTGTCGGCCTACGCGCTCTTCTTCAGAGACACCCAGGCGGCCATCAAGGGCCAAAACCCCAATGCCACCTTTGGGGATGTCTCCAagattgtggcctccatgtggGACAGCCTAGGAGAGGAACAGAAgcagGGGTACAAGAGGAAAACCGAGGCGGCTAAGAAAGAGTACCTGAAAGCCTTGGCCGCGTACCGAGCCAGTCTGGTTTCCAAGACATACAATGACCCTGAACCAAAAAGTGCCCAGCAGACCAGCCAGCCCTCCCACATGCTGCCCCCGAAGCAGCCGCTGTACAGCGTGCCCCCCCAGCCCTCCTCACCCTATCTAGGCCCGCCGGGCTCCTTCCCCCTGTCAGACCTCCAGAGCTACGCAGGCCCGCCCCGCCACACCCTGGCCCAGACCCTCAGCCAATCCCAGATGCTGCCACCCAGCATGAGTGCCTCTCCCCCATCTCCCTTCCAGATCAGCCCACCTCTGCACCCCCACGCCCAACTCTCCCTGCATCAGAGCTCCCTGCTCAACCAGCCAATCCGCATGCAGCAGTCGCAGCCAATCATCTCACACCAAATGGGGCTCCAGGCGCCTCTGCATTCCCCTCCTCTCAGCCAACAGGGATTCTCCCATATTCAGGCTGATTACCAGAACAGTGTCGGGGGCTCACAGTCTCCAGGGGCCCCTAACCCAGGGCACGGCCAGAACCCTGACTGGGACAGCGAGTACTGCAACAGGGACTGTGGACCCAACCACTGCAAcaGTGGCATGGGAGCTCCGGACAAGCCTCTCTACCTCACTTGAAGTTGAAAGACCTCCAAATGTCAGACTCCAGGGAGCGTTCCACCATAACAACAACGTCATCGATGTATCTGCTTTTAcaccattttgtttttctttttttttgtgacggATTTCGAAAATCCCAAAGACTGCTACAGTAACTTCACCTATTTGCCAAGCACTTAGATCGGCCAGAAGCCTGAGGCACTTCTCTTGCA
>XM_039800574.1
GTCAGTCAGCACGGTGGGTCTACTGTTCCATTCTCCTTCTATTGTACTACTCTGTCTGCTTCCCTTGATACATCACCCAAATGGAGTTCCTTGTCGTATCAAAGCCAGAACTACTCCGGTCAAGGCAGAGGCAGCAgtggcggaggaggaggagcaggggaTGAAGACTACGAGATCCCCCCCATCACACCCCCCAACCATGCCGACCCCTCTCTGCTGCACCTCATGGAGCACGAGTCAGGTTACCCCTTCCACTCCCTGCCTCACAACGGCCTGCTCAACACCTACTCCTACCCTGAGCTGCCTGCCCTCATGATGTCCAACATGCTGGGTCAGGACACCCACCTCCTCACGGGGCCTATGCACTCTATAAGCAGTGAGAAGCGGGCCTCGGCAGAAATGATGAAGCCCAAACCCAAAcctcaaaagaagaagaagaagaaggaccCCAACGAGCCACAGAAACCTGTGTCGGCCTACGCGCTCTTCTTCAGAGACACCCAGGCGGCCATCAAGGGCCAAAACCCCAATGCCACCTTTGGGGATGTCTCCAagattgtggcctccatgtggGACAGCCTAGGAGAGGAACAGAAgcagGGGTACAAGAGGAAAACCGAGGCGGCTAAGAAAGAGTACCTGAAAGCCTTGGCCGCGTACCGAGCCAGTCTGGTTTCCAAGACATACAATGACCCTGAACCAAAAAGTGCCCAGCAGACCAGCCAGCCCTCCCACATGCTGCCCCCGAAGCAGCCGCTGTACAGCGTGCCCCCCCAGCCCTCCTCACCCTATCTAGGCCCGCCGGGCTCCTTCCCCCTGTCAGACCTCCAGAGCTACGCAGGCCCGCCCCGCCACACCCTGGCCCAGACCCTCAGCCAATCCCAGATGCTGCCACCCAGCATGAGTGCCTCTCCCCCATCTCCCTTCCAGATCAGCCCACCTCTGCACCCCCACGCCCAACTCTCCCTGCATCAGAGCTCCCTGCTCAACCAGCCAATCCGCATGCAGCAGTCGCAGCCAATCATCTCACACCAAATGGGGCTCCAGGCGCCTCTGCATTCCCCTCCTCTCAGCCAACAGGGATTCTCCCATATTCAGGCTGATTACCAGAACAGTGTCGGGGGCTCACAGTCTCCAGGGGCCCCTAACCCAGGGCACGGCCAGAACCCTGACTGGGACAGCGAGTACTGCAACAGGGACTGTGGACCCAACCACTGCAAcaGTGGCATGGGAGCTCCGGACAAGCCTCTCTACCTCACTTGAAGTTGAAAGACCTCCAAATGTCAGACTCCAGGGAGCGTTCCACCATAACAACAACGTCATCGATGTATCTGCTTTTAcaccattttgtttttctttttttttgtgacggATTTCGAAAATCCCAAAGACTGCTACAGTAACTTCACCTATTTGCCAAGCACTTAGATCGGCCAGAAGCCTGAGGCACTTCTCTTGCA

Function

NR:

description
PREDICTED: TOX high mobility group box family member 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800571.1 True 2123 mRNA 0.55 9 24838584 24919766
XM_039800572.1 False 2120 mRNA 0.55 9 24838584 24919766
XM_039800573.1 False 2030 mRNA 0.54 8 24838584 24919766
XM_039800574.1 False 1460 mRNA 0.57 7 24890538 24919766

Neighbor

gene id symbol gene type direction distance location
pigt pigt,LOC102793327 coding upstream 45482 24785963 ~ 24793102 (+)
sycp2 NA coding upstream 88242 24722289 ~ 24750342 (+)
ppp1r3da ppp1r3d,LOC104919428,LOC100701819 coding upstream 116736 24719775 ~ 24721848 (+)
ttll9 ttll9 coding upstream 122951 24710783 ~ 24715633 (+)
cntn3a.1 NA coding upstream 207589 24559407 ~ 24630995 (+)
alas2 alas2,LOC108236847,LOC106524166 coding downstream 71128 24990894 ~ 24999555 (+)
znf362b LOC104920215,LOC103353008 coding downstream 102859 25022625 ~ 25034515 (+)
LOC120558682 LOC103353010 coding downstream 135371 25055137 ~ 25058398 (+)
zmynd12 zmynd12 coding downstream 138694 25058460 ~ 25065176 (+)
LOC120558685 foxj3,LOC100698572,LOC102787620 coding downstream 169139 25088905 ~ 25154501 (+)
G52827 LOC107550338,LOC103365918,LOC107551495,LOC104947949 non-coding upstream 85404 24751895 ~ 24753180 (+)
G52817 NA non-coding upstream 132678 24705538 ~ 24705906 (+)
G52756 NA non-coding upstream 448457 24387153 ~ 24390127 (+)
G52742 NA non-coding upstream 476317 24360806 ~ 24362267 (+)
G52728 NA non-coding upstream 564548 24270121 ~ 24274036 (+)
G52892 NA non-coding downstream 40050 24959816 ~ 24960103 (+)
LOC120558677 NA non-coding downstream 90223 25009989 ~ 25015398 (+)
G53056 NA non-coding downstream 889947 25809713 ~ 25811047 (+)
LOC120559215 NA non-coding downstream 1075467 25995233 ~ 25997094 (+)
G53109 NA non-coding downstream 1176593 26096359 ~ 26099635 (+)
ctnnbip1 ctnnbip1 other upstream 1024178 23791447 ~ 23814406 (+)
tmem201 tmem201,LOC102777799 other upstream 1073419 23746365 ~ 23765165 (+)
atxn7l2b kcnc4 other upstream 1770105 22991252 ~ 23068479 (+)
lamtor5 lamtor5,LOC102787529 other upstream 1991646 22842044 ~ 22846938 (+)
LOC120559933 NA other upstream 2276063 22562154 ~ 22562521 (+)
LOC120559118 LOC102791662 other downstream 21029 24940795 ~ 24945320 (+)
G52871 LOC104956590 other downstream 33676 24953442 ~ 24957330 (+)
tprg1l tprg1l,LOC102784883,LOC106513028 other downstream 823823 25743589 ~ 25748321 (+)
G53096 ybx1 other downstream 1151819 26071585 ~ 26076664 (+)
G53232 LOC104966952,LOC103362776,LOC102800046,LOC102208894 other downstream 1432694 26352460 ~ 26353463 (+)

Expression


Co-expression Network