mmp9 (mmp9)


Basic Information

Item Value
gene id mmp9
gene name mmp9
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 22806923 ~ 22811471 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800599.1
AACCAAGGGCACAAAGCAGAGACAAGCAGAGCAACCAAAACAAAGAGGAAAGCCAACACTGAAGAAGAAACACTGCTGATCGTCAGCACAGCTTTTTAAATCCTTTTTGTCTAACGGAGCACTTGCTCGCTCCAAGGCTCTTAgtgtatatcttttttgttacattttgaagCAACCTACAGCAGATCTCATCATGAGGTGCTATGCTTtagctgtgtgtttatttttgagTGTAAGCATACAGGATGGATGGAGCCTTCCCCTCAAGTCTGTCTTTGTCACCTTCCCAGGAGAcatcatcaaaaacatgactgaTATGGAGCTGGCAGAAGGTTATCTGAAGAAGTTTGGCTACATTGACACACTGCATCGCAGTGGCTTCCAGTCTATTGTTTCAACCTCCAAGGCTTTGAAGAGGATGCAGAGGCAGATGGGGCTGGAGGAGACTGGAGAGCTGGATAAGTCCACCCTGGACGCCATGAAGCGGCCTCGCTGCGGGGTTCCTGATGTGGCCAACTACAAAACATTTGATGGAGACCTTAAATGGGACCATCGAGATGTTACTTACAGGATCCTTAGCTATACTCCAGATATGGAGAGCTCTCTGATTGATGACGCCTTTGCCAGAGCCTTCAAGGTGTGGAGTGATGTGGCCCCTCTGACTTTTACCCGCCTCTTTGATGGGACGGCTGACATCAtgatttcatttggaagaaaaaaTCACGGAGACCCATACCCATTTGATGGTAAGGATGGTCTTCTGGCCCATGCTTATCCCCCTGGCGAGGGTGTGCAGGGTGACGCACACTTTGACGAGGATGAGTACTGGACCCTGGGAACAGGACCAGCTGTGAAGACTCGCTATGGGAATGCTGATGGTGCCATGTGCCACTTCCCCTTCACTTTCGAGGGCAAATCCTACAGCAGCTGTACTACTGAGGGTCGTTCGGACAACCTGCCATGGTGTGCCACCACAGCTGACTATGGCAGAGACAAGAAATTTGGCTTTTGCCCAAGCGAACTTCTGTACACATTTGGAGGAAACGCAGACGGAGCAAAGTGTGTCTTCCCCTTCGTCTTTCTGGGGGAGGAGTATGACAGCTGTACCACAGAGGGTCGCAGTGACGGTTACCGCTGGTGTGCCACCACAAACAACTTTGATACTGACAAGAAATATGGATTCTGTCCCAGTCGTGACACCGCTGTAATTGGTGGAAATTCTGAGGGAGAGCCCTGCCACTTCCCCTTTGTGTTCCTGGGTAAAGAGTATGACTCCTGCACAAGTGAGGGACGAGGAGATGGCAAGTTGTGGTGCAGTACCACTGACACCTATGATGACGACAAGAAATGGGGCTTCTGTCCCGACCAGGGTTACAGTCTCTTCCTGGTGGCAGCCCATGAGTTTGGACATGCCCTTGGCCTGGATCACTCCAACATAAGAGACGCTCTCATGTACCCCATGTACAGCTATGTGAAAGACTTCTCCCTGCATGAAGACGACATTGAAGGCATTCAATATCTCTATGgacGCAAAACAGGCCCTGATCCCACTCCCCCTCAGCCCAACACCCCAACCGCTACCCCTTATCCAGACCCTGATAAGACTGATGCTACAGATGAAcccaccaccactaccaccGCACGACCTGTGGATCCGACCAAAGATGCCTGCAAGTTGACCAAATTCGACACCATCACTGTGATTGAGGGAGAACTACATTTCTTCAAGGATGGACATTTCTGGAAGATGTCCAACGGAAACGATGAACAGGTCAAGGGACCGTTTTCTGTTTCTGAGAGGTGGCCCGCTCTGCCAGCAGTCATTGACTCTGCCTTCGAGAACATTCTGAACAGTAAATTGTACTTCTTCTCAGGGACCCGATTCTGGGTGTACACAGGGCAGAGTGTTCTGGGACCCCGTAGCATTGAGAAGCTCGGTCTCCCCGACAGCGTTCAGAAAGTGGAGGGAGCACTGCAGAGGGGGAAAGACAAAGTGCTGCTCTTCAGTGGGGAAAACTACTGGAGGCTTGATGTGAAGGCCCAGAAAATCGACAAAGGGTACCCCAAATACACAGATGTGGCCTTTGGTGGTGTCCCCAGTGATGCTCATGATGTGTTCCAGTACAACGGTCACACCTACTTCTGCCGGGAAAGCTTCTACTGGCGTATGAACTCCCGCAGGCAGGTGGATCGTGTTGGCTATGTGAAATATGACCTCCTCAAGTGCACAGATGCTACAGGCCCTAACTACTACTGAGGAGATGAACAAACTGGGATGAGCTGGAAAATTGTCTTTAATGTGGTAGCACCTACTTCTCTCTCCTGTGCAGGTGTAAGGGAGAATGTGAAGCAGTATTTGTGTAAAGTGTCTGTTGTATGATGTGTGTGCTTTCTTGGGATGTGAATAATTTGCCATCATTGACGTTGGCTAATTCTATAACATACAGTATTGGCCTAAAAATAATTCAAAGGCACAAAGGAAAGCAAACCAAGTCGTGATCTTTGGCACTGCCTTGCCCTCAGTCTGTGAACTGCTTGGTTATGGGGGTCTAACATTTAAGACCCATAACCACAACTAAAATTTTATCAAAAGCTATCTGGATTTCAGATTTGCTGCATAACTTCTTAACGTCTGACAGGTtcagacactttacagtattAGATTATTTTGGTATTTATAGCAATATCTAATATTATTTTTGCATCCTTAAGCTTGTTTGATTTGTATaattatatgtgtgtatttctgaAAATGGCTTCAAAGCCAATTACTTGCACTGGAAGACTGATGTGTTTTGTATTACAGTTTGTACTTTTAACGTTAATGCAATAAACATTCTGTGAGAA

Function

symbol description
mmp9 Predicted to enable metalloendopeptidase activity. Acts upstream of or within several processes, including collagen fibril organization; fin regeneration; and positive regulation of granuloma formation. Predicted to be located in extracellular matrix and extracellular region. Is expressed in several structures, including cardiovascular system; female organism; head; hematopoietic cell; and hematopoietic system. Human ortholog(s) of this gene implicated in several diseases, including Down syndrome; anodontia; artery disease (multiple); autoimmune disease (multiple); and lung disease (multiple). Orthologous to human MMP9 (matrix metallopeptidase 9).

NR:

description
matrix metalloproteinase-9 precursor

GO:

id name namespace
GO:0009617 response to bacterium biological_process
GO:0002633 positive regulation of granuloma formation biological_process
GO:0006508 proteolysis biological_process
GO:0031012 extracellular matrix cellular_component
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K01398 MMP2; matrix metalloproteinase-2 (gelatinase A)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800599.1 True 2847 mRNA 0.47 13 22806923 22811471

Neighbor

gene id symbol gene type direction distance location
adora1b adora1,LOC103368126,LOC101166301,LOC102200284,LOC101484151 coding upstream 10941 22791665 ~ 22795982 (+)
cpne5a NA coding upstream 81331 22653501 ~ 22725592 (+)
srpk1a srpk1 coding upstream 179764 22611970 ~ 22627159 (+)
mapk14a LOC103368176,LOC104964410,LOC104939458 coding upstream 196127 22597224 ~ 22610796 (+)
elapor1 kiaa1324 coding upstream 210721 22585431 ~ 22596202 (+)
LOC120559125 NA coding downstream 399 22811870 ~ 22823643 (+)
LOC120559530 LOC104964419,LOC104927136 coding downstream 15160 22826631 ~ 22828548 (+)
slc16a4 slc16a4,LOC102787232 coding downstream 36514 22847985 ~ 22877262 (+)
slc6a17 slc6a17,LOC104944562 coding downstream 108303 22919774 ~ 22942875 (+)
ngrn NA coding downstream 219825 23031296 ~ 23033104 (+)
G52294 NA non-coding upstream 44369 22750063 ~ 22762554 (+)
G52288 NA non-coding upstream 77368 22726597 ~ 22729555 (+)
G52287 NA non-coding upstream 80792 22725873 ~ 22726131 (+)
G52272 lhfpl5,LOC102777996 non-coding upstream 175779 22630594 ~ 22631144 (+)
G52185 NA non-coding upstream 322822 22480543 ~ 22484101 (+)
G52333 NA non-coding downstream 23327 22834798 ~ 22847296 (+)
G52342 rbm15 non-coding downstream 72578 22884049 ~ 22888687 (+)
G52379 ahcyl1,LOC104942237 non-coding downstream 197706 23009177 ~ 23020008 (+)
G52364 nfya non-coding downstream 209335 23020806 ~ 23023328 (+)
G52403 atp5f1 non-coding downstream 329439 23140910 ~ 23192988 (+)
LOC120559933 NA other upstream 244402 22562154 ~ 22562521 (+)
G52210 LOC104964406,LOC106525460,LOC105931770 other upstream 246595 22556329 ~ 22560328 (+)
LOC120558641 LOC103363734,LOC104967523 other upstream 712033 22090197 ~ 22094890 (+)
avpr2aa avpr2,LOC105897269 other upstream 746278 22046763 ~ 22060645 (+)
G51926 NA other upstream 902846 21903542 ~ 21904077 (+)
lamtor5 lamtor5,LOC102787529 other downstream 30573 22842044 ~ 22846938 (+)
atxn7l2b kcnc4 other downstream 179781 22991252 ~ 23068479 (+)
tmem201 tmem201,LOC102777799 other downstream 934894 23746365 ~ 23765165 (+)
ctnnbip1 ctnnbip1 other downstream 979976 23791447 ~ 23814406 (+)
LOC120559118 LOC102791662 other downstream 2129324 24940795 ~ 24945320 (+)

Expression


Co-expression Network