LOC120559153 (LOC102294427,LOC103371493,LOC108250036,LOC102794968,LOC101487634)
Chromosome Information
Item |
Value |
chromosome id |
NC_053116.1 |
NCBI id |
CM020913.1
|
chromosome length |
44101041 |
location |
34887785 ~ 34899218 (-) |
genome version |
GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
Sequence
>XM_039800672.1
agaatgTAGGCCATGCTCCTCTGGCCGTTATTTTGCGTATGTTACGTCTGACGTCAGCGCGTCTGCTTGCCGAATGTTTACATCCAGCAGTTCTTCTGTTCTTCTGACTGGATCTTCACAACAACAAAAGGCTGAACACGAGGAAACCCGCTAAGACAGAGAATATCAGTCGGCATTTTCACAAGTCAACATGGGGGGAGCTGTAAGTGCTGGTGAAGACAATGACGACTTGATTGACAACCTGAAGGAGGCTTACTACATCCGCTCAGACCTGGTGGAGCGGGCTTTCCGAGCTATCGACCGGGCTGACTATTACCTGGATGAATACCGTGACAATGCTTACAAGgaCTTGGCATGGCGGCATGGAAACATCCACCTATCTGCTCCGTGTATCTACTCTGAGGTGATGGAGGCTTTGGATCTCCACCCTTGCCTCTCCTTCCTCAACCTCGGGAGCGGGACTGGCTACCTCAGCACCATGGTCGGCCTCATATTGGGACCATTTGGAGTGAATCATGGAATAGAGTTACATGCAGATGTGATTGAGTATGCCTATCAGAAGCTTGACTCCTTCATCAAAACCAGCGACAGCTTTGACAAATTTGAATTCTGCGAGCCATCCTTTGTTGTGGGTAACTGCCTGGAGATTCCTCCAGAGAGCCGTCAGTATGACAGGGTGTACTGCGGGGCCGGGGTGCAGAAGGAGCATGAGGATTACATGAAGAACCTGCTCAAGGTGGGGGGCATCCTGGTGATGCCTCTTGAGGAAAAGTTGACCAAGATCACGCGCACAGGGCTGAACAGCTGGGAGACCAAAAAGATCATTTCTGTGTCCTTCGCTCCTCTGGTGCTGCCTAAACACATCACAAATGGCAAACCCAAGGCTGTCCCACTACCCAAGTATGAGGTACGGACGCTACAGGAGCTGGCCCGTATCTGCATCCGCCACACCCTCCGAGTGACCACCGACGGAGGAGACAGCCAATCGCGCGGCCGCGGTTCCTCGTTCAGCGTAGGCAGGGGTCTGGCGGTGGCCGGCCTCCACAAGTACGGCCCTCGCTTCAAGCGCAGACGCGTCCACCGGCGCCACTGCAACGCCCTGGTCCTGGCCACGCGTCAGGTGGTGGCCAGCAGTGGCTTCGGCCCCGCTCCCCTggacagcaacaacaaccaggGAGGAAGAgcggaggacgaggaggaggacgcGGCGGCGGGAGAGAGGGAGGCGAGGCGGCAGATGAGAGGGAGCAGGAGGGCggggagaggagcaggagggcCAGCGGCGGCAGCGGTGGTGGAGGAGGACGAGACGGTGGAGGAAGAAGACGAAGAGGAAGAgcacgaggaggaggaggaggagaaggagaccGGGGAGCTGCTCCGACCCCAGCCGGCCATCAACGTCCTCCGAGAGAGGATACTGGGCCTGCCGCTGCCCGAGCCACTGAAGATGTACCTGCTGTACTACAGAGAGAAATGAGCCACGGCCATGTTGGGAGTCAGAGCTCGGAGCTGAGCGCGACGACCGCACAGAGGCTGAAGTCTCTGTTACAACCCCCCCACCACCTGTACAAGGCAGGACTaggactagggctgggtaccgaattcaatactttttagccACGGACCGAATTCCCTCTGTAGTATcgaaaaaaaatgcctcgtcattcaataccaaatttcaatacctaaaggaataaatctcatcagcatcaGTGAGCCTATAAGCATGCGGCATGCTTccaccaagatctaataatgctgctgattggccgtctaacgttacacgtcgtagaggcaggcaggaaaaactctacgttacgcacagagacggggctcacgtggTAGGAGccgaaaaataaataaaaagatttgtgctgtaatgttggaatttatttttgttaaaatggatttttataaaattggtatcgaaaaaaagtttCGCTCGGGAGCCGGTATCGacgtcacggtattggtattggtaccGATATCGAagatttttgaacgatacccagccctaggcaGGACAACATGCCATCTACCTtactgaggggggggggggtgatctctttctctctcacctgCTCTCGTCTTCTCCATCATCCATTCTCTGTCCAACCCCCTTCTTTTTGCCCGGCTCCCACTGTTCTTTTACTGACTAATTTCCTGACACTATAAAAGCGTCATCCAATTCATCCAGTGGAGGGGGAAGTGGGGGTCAATGTTTCAGACAACCAAACAGTCACTGATGTAAGCTCTGTGTCTCCATTGAGGcgcaaaaaaatataaatagattTAAGTACGTAAAGTATACACAGTTTTATCGATTCGCTCTGCACCTCTGTATGTCCAACATGCCAATCAAGCCTTGCCTGACAACAGCTTAACAGTGGCCTGACTATCCTAGTAAAAGGCGATTTAGTGGTGCTGAGAAAAGAGAACCGTCATTGTTTAGGCTACAGCGGCAGACCAGACGTCGCACGTCGAGTTCAGACGCTGTAGCAGCAggcagagagagcagctcacCCAGAGACCAGAAGGCACAGGACTGTCCCAGCTCCTTTCTGTCCACTACTTGCAGCTGTGCCCCGAATTAGAGATTATACATTGATTGTATAAATCGCGTGGaactcgttttgtccacaaatGGTGGTGTGTATTCTCATCTAATGGGGATGGTCTGCTTCGAGAAAGGAAGACAGAGTGGGCCCAAAGATCAACTTTGTGAGGGAAGAAAATGTGCATTCAAAGAgagatttctttctttcactatATCCTATTCAATTATATTATAGCTAGAGCTAGTGACCAAGATGGTGTGATGGTTGTGATTATTTCCACTGATTTCCAAATAAAAGGGGTAGGTTTGTCTTGAAGCCTCAGTCCATTAAATAATGTAACTTTTC
>XM_039800673.1
agcagaatgTAGGCCATGCTCCTCTGGCCGTTATTTTGCGTATGTTACGTCTGACGTCAGCGCGTCTGCTTGCCGAATGTTTACATCCAGCAGTTCTTCTGTTCTTCTGACTGGATCTTCACAACAACAAAAGGCTGAACACGAGGAAACCCGCTAAGACAGAGAATATCAGTCGGCATTTTCACAAGGTATTCGCTGTACCGGGCTTCGGTATGGAGGCGCAGTGGGAGCCAGCGTCAACATGGGGGGAGCTGTAAGTGCTGGTGAAGACAATGACGACTTGATTGACAACCTGAAGGAGGCTTACTACATCCGCTCAGACCTGGTGGAGCGGGCTTTCCGAGCTATCGACCGGGCTGACTATTACCTGGATGAATACCGTGACAATGCTTACAAGgaCTTGGCATGGCGGCATGGAAACATCCACCTATCTGCTCCGTGTATCTACTCTGAGGTGATGGAGGCTTTGGATCTCCACCCTTGCCTCTCCTTCCTCAACCTCGGGAGCGGGACTGGCTACCTCAGCACCATGGTCGGCCTCATATTGGGACCATTTGGAGTGAATCATGGAATAGAGTTACATGCAGATGTGATTGAGTATGCCTATCAGAAGCTTGACTCCTTCATCAAAACCAGCGACAGCTTTGACAAATTTGAATTCTGCGAGCCATCCTTTGTTGTGGGTAACTGCCTGGAGATTCCTCCAGAGAGCCGTCAGTATGACAGGGTGTACTGCGGGGCCGGGGTGCAGAAGGAGCATGAGGATTACATGAAGAACCTGCTCAAGGTGGGGGGCATCCTGGTGATGCCTCTTGAGGAAAAGTTGACCAAGATCACGCGCACAGGGCTGAACAGCTGGGAGACCAAAAAGATCATTTCTGTGTCCTTCGCTCCTCTGGTGCTGCCTAAACACATCACAAATGGCAAACCCAAGGCTGTCCCACTACCCAAGTATGAGGTACGGACGCTACAGGAGCTGGCCCGTATCTGCATCCGCCACACCCTCCGAGTGACCACCGACGGAGGAGACAGCCAATCGCGCGGCCGCGGTTCCTCGTTCAGCGTAGGCAGGGGTCTGGCGGTGGCCGGCCTCCACAAGTACGGCCCTCGCTTCAAGCGCAGACGCGTCCACCGGCGCCACTGCAACGCCCTGGTCCTGGCCACGCGTCAGGTGGTGGCCAGCAGTGGCTTCGGCCCCGCTCCCCTggacagcaacaacaaccaggGAGGAAGAgcggaggacgaggaggaggacgcGGCGGCGGGAGAGAGGGAGGCGAGGCGGCAGATGAGAGGGAGCAGGAGGGCggggagaggagcaggagggcCAGCGGCGGCAGCGGTGGTGGAGGAGGACGAGACGGTGGAGGAAGAAGACGAAGAGGAAGAgcacgaggaggaggaggaggagaaggagaccGGGGAGCTGCTCCGACCCCAGCCGGCCATCAACGTCCTCCGAGAGAGGATACTGGGCCTGCCGCTGCCCGAGCCACTGAAGATGTACCTGCTGTACTACAGAGAGAAATGAGCCACGGCCATGTTGGGAGTCAGAGCTCGGAGCTGAGCGCGACGACCGCACAGAGGCTGAAGTCTCTGTTACAACCCCCCCACCACCTGTACAAGGCAGGACTaggactagggctgggtaccgaattcaatactttttagccACGGACCGAATTCCCTCTGTAGTATcgaaaaaaaatgcctcgtcattcaataccaaatttcaatacctaaaggaataaatctcatcagcatcaGTGAGCCTATAAGCATGCGGCATGCTTccaccaagatctaataatgctgctgattggccgtctaacgttacacgtcgtagaggcaggcaggaaaaactctacgttacgcacagagacggggctcacgtggTAGGAGccgaaaaataaataaaaagatttgtgctgtaatgttggaatttatttttgttaaaatggatttttataaaattggtatcgaaaaaaagtttCGCTCGGGAGCCGGTATCGacgtcacggtattggtattggtaccGATATCGAagatttttgaacgatacccagccctaggcaGGACAACATGCCATCTACCTtactgaggggggggggggtgatctctttctctctcacctgCTCTCGTCTTCTCCATCATCCATTCTCTGTCCAACCCCCTTCTTTTTGCCCGGCTCCCACTGTTCTTTTACTGACTAATTTCCTGACACTATAAAAGCGTCATCCAATTCATCCAGTGGAGGGGGAAGTGGGGGTCAATGTTTCAGACAACCAAACAGTCACTGATGTAAGCTCTGTGTCTCCATTGAGGcgcaaaaaaatataaatagattTAAGTACGTAAAGTATACACAGTTTTATCGATTCGCTCTGCACCTCTGTATGTCCAACATGCCAATCAAGCCTTGCCTGACAACAGCTTAACAGTGGCCTGACTATCCTAGTAAAAGGCGATTTAGTGGTGCTGAGAAAAGAGAACCGTCATTGTTTAGGCTACAGCGGCAGACCAGACGTCGCACGTCGAGTTCAGACGCTGTAGCAGCAggcagagagagcagctcacCCAGAGACCAGAAGGCACAGGACTGTCCCAGCTCCTTTCTGTCCACTACTTGCAGCTGTGCCCCGAATTAGAGATTATACATTGATTGTATAAATCGCGTGGaactcgttttgtccacaaatGGTGGTGTGTATTCTCATCTAATGGGGATGGTCTGCTTCGAGAAAGGAAGACAGAGTGGGCCCAAAGATCAACTTTGTGAGGGAAGAAAATGTGCATTCAAAGAgagatttctttctttcactatATCCTATTCAATTATATTATAGCTAGAGCTAGTGACCAAGATGGTGTGATGGTTGTGATTATTTCCACTGATTTCCAAATAAAAGGGGTAGGTTTGTCTTGAAGCCTCAGTCCATTAAATAATGTAACTTTTC
Function
NR:
description |
PREDICTED: uncharacterized protein LOC102294427 |
GO: NA
KEGG: NA
RNA
RNA id |
representative |
length |
rna type |
GC content |
exon number |
start site |
end site |
XM_039800672.1 |
False |
2906 |
mRNA |
0.51 |
7 |
34887785 |
34899215 |
XM_039800673.1 |
True |
2957 |
mRNA |
0.52 |
7 |
34887785 |
34899218 |
Neighbor
gene id |
symbol |
gene type |
direction |
distance |
location |
plagl2 |
plagl2
|
coding |
downstream |
45499 |
34790613 ~ 34842286 (-) |
slco4a1 |
slco4a1,LOC101478628,LOC102208188,LOC102077347,LOC102776629
|
coding |
downstream |
512282 |
34333598 ~ 34375503 (-) |
snphb |
snph,LOC102777778,LOC102297639
|
coding |
downstream |
721821 |
34134259 ~ 34165964 (-) |
LOC120559811 |
NA
|
coding |
downstream |
923845 |
33955326 ~ 33963940 (-) |
taf13 |
taf13
|
coding |
downstream |
1123181 |
33763783 ~ 33764604 (-) |
myt1b |
NA
|
coding |
upstream |
7219 |
34906437 ~ 35034952 (-) |
tmed4 |
LOC104954229,LOC100701503,LOC102209141,LOC106566412,LOC102295556
|
coding |
upstream |
179581 |
35078799 ~ 35086447 (-) |
cfap126 |
NA
|
coding |
upstream |
265525 |
35164743 ~ 35166257 (-) |
crebzf |
crebzf
|
coding |
upstream |
363746 |
35262964 ~ 35266073 (-) |
las1l |
las1l,LOC103461358
|
coding |
upstream |
367483 |
35266701 ~ 35269429 (-) |
G55343 |
NA
|
non-coding |
downstream |
2195 |
34884408 ~ 34885590 (-) |
G55328 |
NA
|
non-coding |
downstream |
9065 |
34830369 ~ 34878720 (-) |
G55203 |
NA
|
non-coding |
downstream |
330095 |
34557181 ~ 34557690 (-) |
G55190 |
NA
|
non-coding |
downstream |
480615 |
34380065 ~ 34407170 (-) |
G55166 |
NA
|
non-coding |
downstream |
620752 |
34266795 ~ 34267033 (-) |
G55346 |
snrpg,prosc
|
non-coding |
upstream |
163576 |
35062794 ~ 35077065 (-) |
G55360 |
NA
|
non-coding |
upstream |
169797 |
35069015 ~ 35085198 (-) |
G55368 |
NA
|
non-coding |
upstream |
199531 |
35098749 ~ 35100257 (-) |
G55376 |
NA
|
non-coding |
upstream |
211162 |
35110380 ~ 35150623 (-) |
G55396 |
NA
|
non-coding |
upstream |
277580 |
35176798 ~ 35177057 (-) |
ntsr1 |
ntsr1,LOC103361890,LOC104959625
|
other |
downstream |
596716 |
34236566 ~ 34291069 (-) |
G55124 |
fam110a,LOC104960682
|
other |
downstream |
760290 |
34024018 ~ 34127495 (-) |
G55131 |
NA
|
other |
downstream |
794667 |
34087970 ~ 34093118 (-) |
lamb2 |
NA
|
other |
downstream |
1272845 |
33555800 ~ 33614940 (-) |
zgc:158296 |
NA
|
other |
downstream |
1916622 |
32966635 ~ 32971163 (-) |
LOC120559165 |
NA
|
other |
upstream |
370678 |
35269896 ~ 35277854 (-) |
G55492 |
NA
|
other |
upstream |
505386 |
35404604 ~ 35409766 (-) |
si:ch73-70k4.1 |
NA
|
other |
upstream |
975404 |
35874622 ~ 35898736 (-) |
LOC120559361 |
NA
|
other |
upstream |
1658312 |
36557530 ~ 36559959 (-) |
G56160 |
NA
|
other |
upstream |
1782681 |
36681899 ~ 36724209 (-) |
Expression