LOC120559217 (LOC103362599)


Basic Information

Item Value
gene id LOC120559217
gene name LOC103362599
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 25853734 ~ 25857881 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800772.1
ATGAAACATTTTTGTAATTCGCTATGTCTACTGGGAACATTTCTACATGCCTTGGCTCAATGCACTGTCCCAGCCTCAGAGTTTCGGCTGGAAGGAGATTATTTGTTAGGTGGACTTTTTAATATTCATCATGTCACTGTCCCTCTTTATCAAGATAGACCAGAAGCCATTGACTGCTCCAGTCAACCCTTCCTTCTCCAAAATTATCGAATGTTTCAGATGATGAGATTTTCTGTAGAGGAAATCAATAATTCTaccccctcctttttttttttttttttttttccttttctcaaaCTTATCTCAGTCAACGACTTGATCCAACCTTGGGATGAACTACATGATCATCAAGCACAGAAGTCCAATGTGTCCAAAGTGATGGCAGTGGTTGGTCCATTTACAAGCACTCAGTCCATGACTGTAGCCCCACTTTTCATGGCAGATCTCATTCCTCTGGTCAGTTATGGAGCTTCTAGTTCTGTCTTTTCAACAAAACAGAATTTCCCCTCATTCCTTCAAACAGTGCATCCCACTAAAGACATCATAGAAGTGATTGTTAACATTGTGCAGCAGTTGAACTGGCGCTGGGTTGCTTTTCTTAACAGTGACGATGATTATGGCAGAGATGGACTGGAATTGTTCATAAAGAGGATTAAGGACACTGAGATCTGCATGGCGTACACCCAAGCGCTCAACTACAACACAAATCACTCCCCCATATTCAAACAGATAGAGGCACAAAGGATAAATGTCATTATTGTTTTGGCTCCAAGAATGACTGCTGAAGCTCTCATTAAGTCAGCAATACAACTAAATGTCACTAAGAAGGTGTGGATAGCTGATGAGGGATGGTCCTTAGACAAGATGCTTTACAAGGAACAAGAAATCTTAAATATTGGAACTGTCCTTGGAGTGTCTCAGCCTGTAGTGTCAATACCTGGTTTCAGGGACTTTATCTATTCTTCCAAAAGCCAGACTCATTTTGAAAATGCAAGAGAGCAGGAGTTTTGTAATCAGGTTTGCAACTGCAGCAGCATAAGGGCAGAAGAAATCTTGAATGTGGATCCATCTTACTCTTTTCCTGTTTATTCTGCTGTATATGCCATCGCTCATGCCTTACATAATGCCTTGCAATGTGGATCTGGCAGATGTAATGACAATATTACAATATACCCACACATGGTTCTGGCAGAACTGAAGAAATCAAACTTCACACTTTTAAATCAAAGAATACAGTTTGATGACAATGGGGACCCCAAGTTTGGATCATATTCTATAGTTTTCTGGAACCAAAGTCATGATGCAGAAGAAATTGGCTTTTATGATTTTCACCCATGGGTCAGTTCTTTCATCGACAGTACCAAAATTGAGTGGTACACAAAGGGAAAaGTGCCTACTTCACTGTGTTCCCCAGAATGTCGTAGAGGATatgcaaaaaaactaaatggaaTCCACAAATGCTGCTTTGATTGTGAAATCTGTCCAACTGGAACTTATGTCAACAGCACAGAGGATCCCTACAAGTGCATCAACTGTAAGGAGACAGAATGGTCAGCAGCAGGAAGTACATCATGCAATCTGCGGGTGGTGGAGTACATCCCATTCACAGACAGTGGGGCTATACTGATCATGGTCGGGGCCTCGGCCTTGGTGGGCCTCACATTAGCCACGTCTGTTCTCTTTGCCATCAACTACAACACACCTGTTGTCAGATCTGCTGGGGGACCAATGTGCTTCCTGATTTTAGGCTGCCTCAGCCTGTGTAGTCTTAGTATATTCTTTTACTTTGGTAAGCCAACAATTTCCTTTTGTATCTTAAGATTCTTACCGTTTCTCTTGTTCTACACTGTGTGTCTAGCATGTTTTGTTGTGCGCTCTTTTCaaattgtttgcatttttaaaatGGCCGCCAAGTTCCCCACGCTTCACAGTTGGTGGATGAAATATCATGGACAATGGCTGGTCATCACTGTGGCATTTGTTACTCAGGCACTCTTTCTTCTTATTGGCTATACTTATTTCCCCCCCAAGCCCTATGATGACATTTCTTGGTACCCAGACAAAATCATACTTGTTTGTGATATTAATCTCAAATCATTCTTTGGTTCTGTGGTTTTACTTTTATCTTTGTGCTCCCTTTGCTTTATTTTCTCCTACATGGGAAAAGACCTCCCAAAAAATTACAATGAGGCCAAAGCAATAACCTTCTGCCTGCTCCTGCTGATCCTCACCTGGATCATGTTTGCCACTGTATACATTCTGTACCGTGGCAAGTACATCCAAACTCTTAACGCTCTGGCAGTTCTCTCCAGTCTCTATTCCTTTCTGTTGTGGTATTTCCTCCCAAAATGCTACATCATAATTTTTCAaccccaaaaaaacacacaggagtACTTCCAAGGTCTCATTCAGAATTATACCAAAACAATCAGCCAATAG

Function

NR:

description
PREDICTED: taste receptor type 1 member 1-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800772.1 True 2439 mRNA 0.41 7 25853734 25857881

Neighbor

gene id symbol gene type direction distance location
LOC120559220 NA coding upstream 13302 25834546 ~ 25840432 (+)
LOC120559218 NA coding upstream 23832 25823768 ~ 25829902 (+)
LOC120559463 NA coding upstream 34404 25815356 ~ 25819330 (+)
rer1 rer1 coding upstream 47573 25794731 ~ 25806161 (+)
tp73 tp73,LOC102784606 coding upstream 60509 25765160 ~ 25793225 (+)
her3 NA coding downstream 8882 25866763 ~ 25867978 (+)
espn espn coding downstream 143411 26001292 ~ 26050486 (+)
arhgef16 arhgef16 coding downstream 193656 26051537 ~ 26071198 (+)
si:dkeyp-100a1.6 NA coding downstream 226783 26084664 ~ 26086372 (+)
zgc:154075 LOC104945171,LOC101464044,LOC102304528,LOC100692795,LOC102780086,LOC103362596 coding downstream 244767 26102648 ~ 26109344 (+)
G53056 NA non-coding upstream 42687 25809713 ~ 25811047 (+)
LOC120558677 NA non-coding upstream 838336 25009989 ~ 25015398 (+)
G52892 NA non-coding upstream 893631 24959816 ~ 24960103 (+)
G52827 LOC107550338,LOC103365918,LOC107551495,LOC104947949 non-coding upstream 1100554 24751895 ~ 24753180 (+)
G52817 NA non-coding upstream 1147828 24705538 ~ 24705906 (+)
LOC120559215 NA non-coding downstream 137352 25995233 ~ 25997094 (+)
G53109 NA non-coding downstream 238478 26096359 ~ 26099635 (+)
G53221 NA non-coding downstream 467340 26325221 ~ 26325468 (+)
G53222 NA non-coding downstream 468038 26325919 ~ 26329616 (+)
G53223 LOC103362778,LOC108236819,LOC101165391 non-coding downstream 472203 26330084 ~ 26330628 (+)
tprg1l tprg1l,LOC102784883,LOC106513028 other upstream 105413 25743589 ~ 25748321 (+)
G52871 LOC104956590 other upstream 896404 24953442 ~ 24957330 (+)
LOC120559118 LOC102791662 other upstream 908414 24940795 ~ 24945320 (+)
ctnnbip1 ctnnbip1 other upstream 2039328 23791447 ~ 23814406 (+)
tmem201 tmem201,LOC102777799 other upstream 2088569 23746365 ~ 23765165 (+)
G53096 ybx1 other downstream 213704 26071585 ~ 26076664 (+)
G53232 LOC104966952,LOC103362776,LOC102800046,LOC102208894 other downstream 494579 26352460 ~ 26353463 (+)
LOC120559113 LOC108236696,LOC104966950,LOC103362773,LOC103384494 other downstream 520311 26378192 ~ 26383047 (+)
atp5f1e NA other downstream 585169 26443050 ~ 26444890 (+)
LOC120559571 vapb,LOC100711919,LOC102796136,LOC101481364 other downstream 625651 26483532 ~ 26537351 (+)

Expression


Co-expression Network