LOC120559218


Basic Information

Item Value
gene id LOC120559218
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 25823768 ~ 25829902 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800773.1
ATGAAACATTTTCTGgtttctctgtgtctcctgGAAACATTTCTACATGTCTTGGCTCAATGTGTCCCAGCCTCAGAGTTTCATCTGGAAGGAGATTATTTGTTAGGTGGACTTTTTAATGTTCATCATGATAGTGACCCTGTTTATCACGACAGACCAGAAGCCATCGACTGCTCCAGTAAACCCATAGTCAATTCAAGTTATCGGAGGTTTCAGTTGATGAGATTCGCTGTAGAGGAAATCAATAACTCGACCACCCTCCTGCCAAATGTATCTCTCGGCTATGATATATTTGACGACTGCTCAGATACACAAAGTTTCCCAGGCATTTTCAAACTCATATCAGACAATGAGTTGATCCAACCTGGGGGTAAACTACACAAGAATCGGTCCAAAGTGATAGCAGTGGTCGGCGCCTCTACAAGCACACATTCCCTGACTGTAGCCCCACTCTTCATGGTGAATCTCATTCCCATGGTCAGTTATGCAGCTGCAAGTTCTGTCTTTTCAAGAATCCAGTATTTCCCCTCTTTCCTACGAACAGTGCCTCCCAATCAAGACACCATAGAAGTGATTGTTAATATTCTTCAGCACTACAACTGGCGCTGGGTTGCTTTCCTTTACATTGATGATGATTTTGGCAAAGATGGACAGGAATTGTTCATGAAGAGGATTAAGGACACTGAGATCTGCCTGGCATACACCCAAGGCCTCAATCAATATACACATTACTCCCAAATATTCAAACAGATAGAGGCACAGAGGATAGGTatcattattgtttttgttcatgAATGGACTGCTGAACCTCTCATTGAGTCAGCAATACAACTAAACATCACCAACAAAGTGTGGATAGCACTGAATACATGGTCGTTAAACAAGAAGCTCCCCAAGAAGAAAGGAATCAAAAATATTGGAACTGTAATTGGGTTTTCTGAGTCAGAAGTGACAATACCTGGTTTCAgtgattttatttattcttccaGAAGCCTGACTCATTGTGAAAATgcagaactttttttttgtaatcagGCATGCAACTGCAGCAGCCCAAGTGCAGAAGATGTCATAGCTGCTGAGCCAACTTttaatttttatgtttattctgCTGTATATGCCATCGCTCATGCCGTACACAATGCCTTGCAATGTGGATCTGGCAGATGTAATCGCAATATTACAGTGTACCCACACATGGTTCTAACAGAGCTGAAGAAGTCAAACTTCACAATTTTAAATCAGAGGATTCGGTTTGATGAGAATGGTGACCCCAACTACGGATCATTTTCTATAATTTTCTGGAACCAAAGTGGTGATGCAGAGGTGATCGGCTTTCATAATTTACACCCACCGTTCCATTTCTTCATCAACGACAGCAAAATGCAGTGGTACACAGAGGGAGAaGCGCCTACTTTACAGTGTTCCCCAGAATGTCGTAGAGGATATGCAAAAAAGTATAGTGGAATCCACAAATGCTGCTTCGATTGTGAAATGTGTCCAAATGGAACTTATGTCAACAGCACGGAGGATCCCTACAAGTGCATCAACTGTAAGGAGACAGAATGGTCAGCAGCAGGAAGTACATCATGCAATCTGCGGGTGGTGGAGTACATCCCATTCACAGACAGTGGGGCTATACTGATCATGGTCGGGGCCTCGGCCGTTTGGGCCTCCACATTAGCCACGTCTGTTCTCTTTGCCATCAACTACAACACACCTGTTGTCAGATCTGCTGGGGGACCAATGTGCTTCCTGATTTTAGGCTGCCTCAGCCTGTGTAGTCTTAGTATATTCTTTTACTTTGGTAAGCCAACAATTTCCTTTTGTATCTTAAGATTCTTACCGTTTCTCTTGTTCTACACTGTTTGTCTAGCATGTTTTGTTGTGCGCTCTTTTCAAATTGTTTGCATTTTCATGGCCGCCAAGTTCCCCAAACTCCACAGTTGGTGGATGAAATATCATGGACAATGGCTGGTCATCACTGTGGCATTTGTAACTCAGGCACTCTTTCTTCTTATTGGCTATACTTATTCTCCTCCCAAGCCTTACGATGACATTTCTTGGTACCCAGACAAAATCATACTTGGTTGTGATATTAATCTCAAAGCATCCTCTGGTTCTGTGGGTTTACTCTTGTGTTTGTGCTCCCTTTGCTTTATTTTCTCCTACATGGGAAAAGACCTCCCAAAAAATTACAATGAGGCCAAAGCAATAACCTTCTGCCTGCTCCTGCTGATCCTCACCTGGATCATGTTTGCCACTGTATACATTCTGTACCGTGGCAAGTACATCCAAACTCTTAACGCTCTGGCAGTTCTCTCCAGTCTCTATTCCTTTCTGTTGTGGTATTTCTTcccaaaatgttttattatgattTTCCAATCGGACAAAAACACGCAGGAGTACTTCCAAGGTCTTATTCAGAATTATACTAAAACAATCAGTCAGTAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800773.1 True 2454 mRNA 0.42 7 25823768 25829902

Neighbor

gene id symbol gene type direction distance location
LOC120559463 NA coding upstream 4438 25815356 ~ 25819330 (+)
rer1 rer1 coding upstream 17607 25794731 ~ 25806161 (+)
tp73 tp73,LOC102784606 coding upstream 30543 25765160 ~ 25793225 (+)
prdm16 prdm16,LOC102785463 coding upstream 109378 25532101 ~ 25714390 (+)
LOC120558819 NA coding upstream 379928 25440361 ~ 25443840 (+)
LOC120559220 NA coding downstream 4644 25834546 ~ 25840432 (+)
LOC120559217 LOC103362599 coding downstream 23832 25853734 ~ 25857881 (+)
her3 NA coding downstream 36861 25866763 ~ 25867978 (+)
espn espn coding downstream 171390 26001292 ~ 26050486 (+)
arhgef16 arhgef16 coding downstream 221635 26051537 ~ 26071198 (+)
G53056 NA non-coding upstream 12721 25809713 ~ 25811047 (+)
LOC120558677 NA non-coding upstream 808370 25009989 ~ 25015398 (+)
G52892 NA non-coding upstream 863665 24959816 ~ 24960103 (+)
G52827 LOC107550338,LOC103365918,LOC107551495,LOC104947949 non-coding upstream 1070588 24751895 ~ 24753180 (+)
G52817 NA non-coding upstream 1117862 24705538 ~ 24705906 (+)
LOC120559215 NA non-coding downstream 165331 25995233 ~ 25997094 (+)
G53109 NA non-coding downstream 266457 26096359 ~ 26099635 (+)
G53221 NA non-coding downstream 495319 26325221 ~ 26325468 (+)
G53222 NA non-coding downstream 496017 26325919 ~ 26329616 (+)
G53223 LOC103362778,LOC108236819,LOC101165391 non-coding downstream 500182 26330084 ~ 26330628 (+)
tprg1l tprg1l,LOC102784883,LOC106513028 other upstream 75447 25743589 ~ 25748321 (+)
G52871 LOC104956590 other upstream 866438 24953442 ~ 24957330 (+)
LOC120559118 LOC102791662 other upstream 878448 24940795 ~ 24945320 (+)
ctnnbip1 ctnnbip1 other upstream 2009362 23791447 ~ 23814406 (+)
tmem201 tmem201,LOC102777799 other upstream 2058603 23746365 ~ 23765165 (+)
G53096 ybx1 other downstream 241683 26071585 ~ 26076664 (+)
G53232 LOC104966952,LOC103362776,LOC102800046,LOC102208894 other downstream 522558 26352460 ~ 26353463 (+)
LOC120559113 LOC108236696,LOC104966950,LOC103362773,LOC103384494 other downstream 548290 26378192 ~ 26383047 (+)
atp5f1e NA other downstream 613148 26443050 ~ 26444890 (+)
LOC120559571 vapb,LOC100711919,LOC102796136,LOC101481364 other downstream 653630 26483532 ~ 26537351 (+)

Expression


Co-expression Network