LOC120559220


Basic Information

Item Value
gene id LOC120559220
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 25834546 ~ 25840432 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800774.1
ATGAAACATTTTCTGgtttctctgtgtctcctgGAGATATTTCTACATGTCTTGGCTCCATGTGTCCCAGCCTCAGAGTTTCAGCTGGAAGGAGATTATTTGTTAGGTGGACTTTTTAATGTCCATCATGATAGTGACCTTGTTTATCATGACAGACCAGAAGCCATCGACTGCTCCAGTAAACCCCTAGTCAATTCAAGTTATCGGAGGTTTCAGTTGATGAGATTCGCTGTAGAGGAAATCAATAACTCGACCACCCTCCTGCCAAATGTATCTCTTGGCTATGATATATTTGACCACTGCTCTGATACACAAAGTTTTCCAGGCATTTTCAACCTCCTATCAGACGATGACTTGATCCAACCTGGGGGTAAACTACACAAGAATCGGTCCAAAGTGATAGCAGTGGTCGGCGCCTCTACAAGCACACATTCCCTGACTGTAGCCCCACTCTTCATGATGAATCTCATTCCTATGGTCAGTTATGCAGCTGCAAGTTCTGTCTTGTCAAAAATCCAGTATTTCCCCTCTTTCCTACGAACAGTGCATCCCAATCAAGACACCATAGAAGTGATTGTTAATATTCTTCAGCACTACAACTGGCGCTGGGTTGCTTTCCTTTACATTGATGAAGATTATGGCAAAGATGGACAGGAATTGTTCATGAAGAGGATTAAGGACACTGAGATCTGCCTGGCGTACACCAAAGGCCTCAATCAATATACAAATTACTCCCAAATATTCAAACAGATAGAGGCACAGAGGATAGGTatcattattgtttttgttcatgAATGGACTGCTGAACCTCTCATTGAGTCAGCAATACAACTAAACGTCACCAACAAAGTGTGGATAGCAGTGAATACATGGTCGTTAAACAAGAAGCTCCCCAAGAAGAAAGGAATCAAAAATATTGGAACTGTAATTGGGTTTTCTGAGTCAGAAGTGACAATTCCTGGTTTCAgggattttatttattcttccaGAACTCATTGTGAAAATGCAGAAACAATTAGAAAGTTTTTGTAATCTGCTGCTGACCACctatcttttaattttaatgtttATTCTGCTGTATATGCCATCGCTCATGCCTTACACAATGCCTTGCAATGTGGATCTGGCAGATGTAATCGCAATATTACAGTGTACCCACACATGGTTGTAGCAGAGCTGAAGAAGTCAAACTTCACAATTTTAAACCAGAGTATTCGGTTTGATGAGAATGGTGACCCCAACTACGGATCCTATTCTATAGTTTTCTGGAACCAAAGTGGTGATGCAGAGGTGATCGGCTTTAATAATTTACACACACCGTTCCATTTCTTCATCAACGACAGCAAAATCAAGTGGTACACAGAGGGAGAAGTTCCTACTTTACCGTGTTCCCCAGAATGTCGTAGAGGATATTCAAAAAAGTATAATGGAATCCACAAATGCTGCTTCGATTGTGAGATCTGTCCAAATGGAACTTATGTCAACAGCACAGATGATCCCTACAAGTGCATCAACTGTAAGGAGACAGAATGGTCAGCAGCAGGAAGTACATCATGCAATCTGCGGGTGGTGGAGTACATCCCATTCACAGACAGTGGGGCTATACTGATCATGGTCGGGGCCTCGGCATTGGGGGCCGCGACATCACGCCACACGTCTGTTCTCTTTGCCATCAACTACAACACACCTGTTGTCAGATCTGCTGGGGGACCAATGTGCTTCCTTATTTTAGGCTGCCTCAGCCTGTGTAGTCTTAGTATATTCTTTTACTTTGGTAAGCCAACAATTGCCTTTTGTATCTTAAGATTCTTACCGTTTCTCTTGTTCTACACTGTTTGTCTAGCATGTTTTGTTGTGCGCTCTTTTCAAATTGTTTGCATTTTCAAAATGGCCGCCAAGTTCCCCAAGCTCCACAGTTGGTGGATGAAATATCATGGACAATGGCTGGTCATCACTGCGGCATTTGTTACTCAGGCACTCTTTCTTCTTATTGGCTATACTTATTCTCCCCCCAAGCCTTACGATGACATTTCTTCGTACCCAGACAAAATCATACTTGTTTGCAATATGAATGTCATATCATCATCTGGTTCTGTGGTTTTACTTTTATCTTTGTGCTCCCTTTGCTTTATTTTCTCCTACATGGGAAAAGACCTCCCAAAAAATTACAATGAGGCCAAAGCAATAACCTTCTGCCTGCTCCTGCTGATCCTCACCTGGATCATGTTTGCCACTGTATACATTCTGTACCGTGGCAAGTACATCCAAACTCTTAACGCTCTGGCAGTTCTCTCCAGTCTCTATTCCTTTCTGTTGTGGTATTTCCTCCCAAAATGTTACATCATCATTTTTCAATCGTACAAAAACACGCAGGAGTACTTCAAAGGTCTCATTCAGAATTATACCAAAACAATCAGCCAGTAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800774.1 True 2424 mRNA 0.42 6 25834546 25840432

Neighbor

gene id symbol gene type direction distance location
LOC120559218 NA coding upstream 4644 25823768 ~ 25829902 (+)
LOC120559463 NA coding upstream 15216 25815356 ~ 25819330 (+)
rer1 rer1 coding upstream 28385 25794731 ~ 25806161 (+)
tp73 tp73,LOC102784606 coding upstream 41321 25765160 ~ 25793225 (+)
prdm16 prdm16,LOC102785463 coding upstream 120156 25532101 ~ 25714390 (+)
LOC120559217 LOC103362599 coding downstream 13302 25853734 ~ 25857881 (+)
her3 NA coding downstream 26331 25866763 ~ 25867978 (+)
espn espn coding downstream 160860 26001292 ~ 26050486 (+)
arhgef16 arhgef16 coding downstream 211105 26051537 ~ 26071198 (+)
si:dkeyp-100a1.6 NA coding downstream 244232 26084664 ~ 26086372 (+)
G53056 NA non-coding upstream 23499 25809713 ~ 25811047 (+)
LOC120558677 NA non-coding upstream 819148 25009989 ~ 25015398 (+)
G52892 NA non-coding upstream 874443 24959816 ~ 24960103 (+)
G52827 LOC107550338,LOC103365918,LOC107551495,LOC104947949 non-coding upstream 1081366 24751895 ~ 24753180 (+)
G52817 NA non-coding upstream 1128640 24705538 ~ 24705906 (+)
LOC120559215 NA non-coding downstream 154801 25995233 ~ 25997094 (+)
G53109 NA non-coding downstream 255927 26096359 ~ 26099635 (+)
G53221 NA non-coding downstream 484789 26325221 ~ 26325468 (+)
G53222 NA non-coding downstream 485487 26325919 ~ 26329616 (+)
G53223 LOC103362778,LOC108236819,LOC101165391 non-coding downstream 489652 26330084 ~ 26330628 (+)
tprg1l tprg1l,LOC102784883,LOC106513028 other upstream 86225 25743589 ~ 25748321 (+)
G52871 LOC104956590 other upstream 877216 24953442 ~ 24957330 (+)
LOC120559118 LOC102791662 other upstream 889226 24940795 ~ 24945320 (+)
ctnnbip1 ctnnbip1 other upstream 2020140 23791447 ~ 23814406 (+)
tmem201 tmem201,LOC102777799 other upstream 2069381 23746365 ~ 23765165 (+)
G53096 ybx1 other downstream 231153 26071585 ~ 26076664 (+)
G53232 LOC104966952,LOC103362776,LOC102800046,LOC102208894 other downstream 512028 26352460 ~ 26353463 (+)
LOC120559113 LOC108236696,LOC104966950,LOC103362773,LOC103384494 other downstream 537760 26378192 ~ 26383047 (+)
atp5f1e NA other downstream 602618 26443050 ~ 26444890 (+)
LOC120559571 vapb,LOC100711919,LOC102796136,LOC101481364 other downstream 643100 26483532 ~ 26537351 (+)

Expression


Co-expression Network