tbc1d25 (tbc1d25)


Basic Information

Item Value
gene id tbc1d25
gene name tbc1d25
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 37156368 ~ 37172204 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800793.1
CGCAAATTCTCCACCTCCAGTAGATGGCGGTAACACAGCTGTGTAGCCCATCTCAGACCCAGACCCTATCACGAAATGAGAGGAACTCGGCTAGTGCTACTGTTATTGATCACCATGTCGGTGTAGAAGGAAAACAAAACCCAGAACCACCACCCTGTTCCGAAAACGGAGTCTTTAAAATGGCAGgcgaggaggagaggggggtggTTCGTGTCAAAGTCAAGAAATGTGACGGGGTGTTTCCTGTGGAGTTTCGCTCCTTTGCTGTTGATCCTCAGATAACGTCGCTGGAGGTCCTGCAGCACATACTCATCAGAGCCTTTGATTTGAACGGGAAGCGGAATTTCGGGATCAGTTACCTGTCTCGAGATCGGAGTGGTGCTGAAACGTATCTGTCTCTGCTGTCTGACTGGGATTTGGATGTCGCATTTGTCGGTGCAGCAAAATCCCATCTGCAGCTCAAGATGGACATAAAACCTTCAGAAGACAGTCCTGTTATGGAGGAGTGGGACATCATAAGCCCCAAAGACGTGATTGGCTCCGAGCAGCTTCTCACAGAGCGGACTCGGTCTTTGGCATCCGCAGCTCTTCCCTTCACACAGTCTCTACTGTCCCAGGTGGGCCGCACGCTGAACAGAGTCCAGCAAGCCCTCAGCTGGTCTTACGGGGAAGAGATCAAGCCCTTCAAGCCCCCTCTGAGCGATGCCGAGTTTCACAATTACCTCAACGGACAGGGCCAGTTGTCCCGACCTGAGGAACTGCGACTGCGCATCTACCATGGCGGTGTGGAACCTTCACTGCGCAAGGTTGTTTGGCGGTACCTCCTGAACGTCTACCCCGACGGACTCAGCGGACAGGAAAGAATGGACTACATGAAGAGGAAGACGAGGGAGTACGACCAGCTGAAGAGAGAGTGGAACGCCCGGGTCAGCCACGAGGACCTTGAATTTATCCGTGGGAATGTTCTTAAAGACGTCCTGCGGACAGACCGGGCTCATCCGTACTACGCGGGCTCAGAAGACAGTCCACATTTGACCGCCCTCACAGACCTGCTCACCACGTTCGCCATCACACATCCACAGatatCGTACTGTCAAGGCATGAGTGATATTGCCTCCCCAATACTTGCGGTAATGGACAACGAGGCACACGCCTTCATTTGCTTTTGTGGCATCATGAAACGCTTGGAGGGGAACTTCCGGCCGGATGGCCAGCTCATGTCTGTCAAGTTCCAGCATCTAAAGCTGCTTCTGCAGTACTCGGATCCCGAATTCTACTCTTACCTGGTGTCCCGAGGAGCCGACGACCTCTTCTTCTGCTACCGCTGGCTGCTCCTGGAGCTCAAGCGAGAGTTTGCGTTTGATGATGCCCTGAGGATGCTCGAGGTAACGTGGAGCTCGCTGCCCCCGGATCCTCCAGAAACCGAAGTGGAACTCCTGGGACCGCCGGTGGACAGCGATGAAACAACGGCCTGCAGAGGCAAGGCCAAGGTGGTTGAGAATGGTCTCGGAGACGACAAGGAACGAAAAGAGAAGCAGCGTAGACGACACATGCTGAGGCCTTCGAGAGAAGAACCAGATGGGAGCGGGAATGCTGCCGTAGAACAAAAAGACAGGAGAAATGTCGTCGCTGAAAAGGGAAGCGAGGTGGGTGAATATATTCCTCCAGCGACCGTTGAAAAGGCAGATTTGCAGGCTCTGCCTCTTGCGAGGCAAACTAGTTTCGGGGAGTTTAAATACTACTCTGCCCGAAACGAAGATAGCTTTCACATGGAGGATGCTGAGCCGGCGCAGCGTTTGGTGTCCTCAAAGTCCGTGACGAGCATTGCAAGGCGCCAGTCCACCGTTGATAGTGAGGAGGACCCGGGAGAGAGAACACCTCTCATAAAAAACGGCGACAATGGGTTCGCTCCAACGTCATCGCCTCCTCTCTTTCCTACTGGCCTTCCGATCTGGAAAACCggctcctctgtctctcccacaTCTTCAGCTTCACCCTCCAGCTGGCCAGGTGCTTCTCCAGACTCTCCTCCAAAATCCCCATCCACAACCAATGGAAGTGAGGCCTTACTTAGAACTGTGCCAAAAGTATTGACCAACTCTGCCCAAGTGCTCAGCAGTACAGGGATTAACTCGCCCACAACCCCAACTGTAAAAACATCCGTTGCGTCTCCAAACCACACTCTGAGTCGGTCGTTACTCTCTTCGCCCATTTTGTCCTTAGGAAGAGGCCCGTCGCTGTCTGGCGCCAGGTCGTCCTACAACAATCTCCCTTCGCCTGGCAACAAATCCCCCAGCACCACAGCGAACACGCCCAGTTCTTCAAAAGCTGAGACCACCAGCATCAAACCATGTTCCCTGCCGCCGCCTCAAGAGTTCGGCAAAGGCAATCCCTTCATGCTGTTCCTGTGCCTGTCCATCCTGCTGGAGCACCGAGACCACATCATCAAGAACAGCTTGGATTACAACGAGCTAGCCATGCACTTTGATCGCCTTGTGCGGCGCCACAACCTGAGCCGGGTGCTGCAGCGAGCCAAGGCCTTATTTGCGGACTACTTGCAGAGCGAAGTGTGGGACTCGGAAGAAGGGGACGAGGTCAGTTCGGACTCTCCGACAACAGCTACTGCAGCTCAACACTCCCCCTCTTCAACCATCTCCGCCAGGCCCGTTTACAGCCCTTTAGCGTCGCCTCAGTCATCATCTCCGAACTCGACCTATAACCTCGCAACCACCATTCCCTCCCCAACAGCTCAAGTTTCCCTTTCTCCCGTCTCCTGACTCCGTCATGCATCATTGGCTTACTATTCTCAGTGAACTCCTCTGTAGACTTTGTTTGTCGCCCATTGGAGCggtaggcctttttttttatacagccttccacattgaattgggCTGTTAATGGATAACtaagttttttttggggggggggggtttcaacctggacccatgtttttgtgtttaagtgactgatgggcACAATAATCtatgaaattggtccagtattaagcaagaaacaAGCCCCAATGTAACTTATTGGGCAATTGCACACCcactgtttttgccactgacaggctcagattaatattttaagtgtctgacaacattatggaaaggatccctacagagatagacctttttgttaaaagtAAGATCCTATTTGTTTAACATAGCTGTTGCGAAACTCACCAGACTGCACTTAAATtaacagtaattttatcatcttaagacacacttcattcaaagtcaacagaaacaaaataaaactatgaaaagccgtcttggttcatctttccactgttccaacaatcaccactctgg

Function

symbol description
tbc1d25 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity; intracellular protein transport; and regulation of autophagosome maturation. Predicted to be active in autophagosome. Orthologous to human TBC1D25 (TBC1 domain family member 25).

NR:

description
PREDICTED: TBC1 domain family member 25

GO: NA

KEGG:

id description
K24799 TBC1D25; TBC1 domain family member 25

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800793.1 True 3317 mRNA 0.52 7 37156368 37172204

Neighbor

gene id symbol gene type direction distance location
LOC120559725 rpl22,LOC102779685,LOC106566811,LOC106572248,LOC100699599,LOC101484027,LOC102785448,LOC103376530,LOC102235575,LOC104936395 coding downstream 94673 37053787 ~ 37061695 (-)
plod1a NA coding downstream 204089 36903077 ~ 36952279 (-)
gmeb2 gmeb2,LOC102776727 coding downstream 290066 36850850 ~ 36866302 (-)
stk35 LOC105921027,LOC108249422 coding downstream 351698 36780301 ~ 36804670 (-)
lrif1 NA coding downstream 530399 36610137 ~ 36625969 (-)
LOC120559612 LOC103363412,LOC108249421,LOC107391357 coding upstream 48330 37220534 ~ 37254041 (-)
mthfr mthfr coding upstream 125301 37297505 ~ 37329403 (-)
LOC120559054 NA coding upstream 902213 38074417 ~ 38077028 (-)
LOC120559055 NA coding upstream 907677 38079881 ~ 38082216 (-)
tfe3a NA coding upstream 911618 38083822 ~ 38118628 (-)
G56291 NA non-coding downstream 8926 37145334 ~ 37147442 (-)
G56265 NA non-coding downstream 37912 37066665 ~ 37118456 (-)
G56279 NA non-coding downstream 38219 37102736 ~ 37118149 (-)
G56250 NA non-coding downstream 131013 37024934 ~ 37025355 (-)
G56245 NA non-coding downstream 176032 36975594 ~ 36980336 (-)
G56275 NA non-coding upstream 58250 37230454 ~ 37230861 (-)
G56305 NA non-coding upstream 67713 37239917 ~ 37261393 (-)
G56308 NA non-coding upstream 100189 37272393 ~ 37276725 (-)
G56314 NA non-coding upstream 115446 37287650 ~ 37287959 (-)
G56315 NA non-coding upstream 117944 37290148 ~ 37290506 (-)
phc2a LOC103367632,LOC102778931,LOC100708466,LOC102197996 other downstream 155217 36984885 ~ 37001151 (-)
rhoaa LOC106529366,LOC107558917,LOC102777028,LOC107687289,LOC103367639,LOC107599000,LOC103384870,LOC106572042 other downstream 260828 36884803 ~ 36895540 (-)
LOC120559655 mtch1,LOC102799640 other downstream 412236 36723238 ~ 36744132 (-)
G56160 NA other downstream 432159 36681899 ~ 36724209 (-)
LOC120559361 NA other downstream 596409 36557530 ~ 36559959 (-)
G56335 NA other upstream 200431 37372635 ~ 37373316 (-)
G56376 NA other upstream 396856 37569060 ~ 37839849 (-)
LOC120559227 esd other upstream 709964 37882168 ~ 37900343 (-)
G56436 NA other upstream 753990 37926194 ~ 37940548 (-)
LOC120559229 NA other upstream 827798 38000002 ~ 38046669 (-)

Expression


Co-expression Network