dnase1l1l (dnase1l3,dnase1l1,LOC100708970)


Basic Information

Item Value
gene id dnase1l1l
gene name dnase1l3,dnase1l1,LOC100708970
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 23201619 ~ 23204113 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800824.1
TCATTGTATTCAGTGGTTTTAACTGTTCCAGATAAAGCTCCATTCTCAACAGGCACTGACGCAGCACATCTACCACACAGATCTTTTGCCCACATTTACCTGCATGTTCCCCCAAATACACCACAGGTCATTGAAGAGATGGATCTTTGCTGGACTGAGTACAATCTCCTGGTGAAACTGCCACTGAAGAGTGACAACCCTCTGCAAGATGAGGACTGCAGTTCTGCTGTTTGttgtggggttgtgtgtgttgaACGTCACATCTTCCCTGAAAATCTGCGCTTTCAATGTCCAGAGCTTTGGTGAATCAAAGGCAAACAACAAGAAGGTCATGGGAATTCTCCTGAAGATTCTTTCTCGGTGTGACTTGTGTCTCATTCAGGAGGTCCGAGACTCCAAAGGAGCAGCAATACAAGCTTTGGTTAAGGATCTTAATGGCAGATTTGACAAATCCAACTCATACTCCTATGTGGAGAGTGAAAGGCTGGGGAGGAAGACCTACAAGGAGCAGTACGTCTACATTTACAGGAACAATGTGCTGACAGTCAAAGAGCATTATCAGTATCCTAAACTAGAAGGAGAAGGGACAAATGAAACAGATGTTTTCTCCAGAGAGCCTTTCATTGTTCGCTTTCACTCCCCTACGACACtggTGAAGGATATTGTCCTGATTGGGCAGCAtacttgtcccagaaatgcgaTGAAGGAGATTAACGAACTGTATTCTGTCTTCAAAGGAATTTACAAGAAGTGGAAGACTGATAATGTAATAATCTTAGGGGACCTTAACGCCGGCTGCAGCTACGTCACCATCAAGGGCTGGAGAGCTATGCGCTTGAGGAGCGACCCCAAATTTCACTGGCTAATTGGAGATGAGCAAGACACTACTGTCCGTGAGAAGACGCACTGTGCCTATGACAGGATCATTGTCCATGGACGTGAGATTATTTCCAGTATAGTGCCAGGTTCAGCTCAACCGTTCAACTTTAAAGAGAATTTTCATTTAACAGAGGAGGAGGCTCTTGAGGTGAGTGATCATTTTCCTGTTGAAGTTGACCTGAAGCCCAATCACCGCTACCTCCTACGCAGTGAGCTGTAGGACAACCATCAACAATCCCGGATGTCTTGATTTTAACTGTACTTTTACTGGATTTTAGttgtcaaaataaaatcaaaattcCCAACAGAA
>XM_039800825.1
AGTGGTTTTAACTGTTCCAGATAAAGCTCCATTCTCAACAGGCACTGACGCAGCACATCTACCACACAGATCTTTTGCCCACATTTACCTGCATGTTCCCCCAAATACACCACAGGTCATTGAAGAGATGGATCTTTGCTGGACTGAGTACAATCTCCTGGTGAAACTGCCACTGAAGAGTGACAACCCTCTGCAAGATGAGGACTGCAGTTCTGCTGTTTGttgtggggttgtgtgtgttgaACGTCACATCTTCCCTGAAAATCTGCGCTTTCAATGTCCAGAGCTTTGGTGAATCAAAGGCAAACAACAAGAAGGTCATGGGAATTCTCCTGAAGATTCTTTCTCGGTGTGACTTGTGTCTCATTCAGGAGGTCCGAGACTCCAAAGGAGCAGCAATACAAGCTTTGGTTAAGGATCTTAATGGATTTGACAAATCCAACTCATACTCCTATGTGGAGAGTGAAAGGCTGGGGAGGAAGACCTACAAGGAGCAGTACGTCTACATTTACAGGAACAATGTGCTGACAGTCAAAGAGCATTATCAGTATCCTAAACTAGAAGGAGAAGGGACAAATGAAACAGATGTTTTCTCCAGAGAGCCTTTCATTGTTCGCTTTCACTCCCCTACGACACtggTGAAGGATATTGTCCTGATTGGGCAGCAtacttgtcccagaaatgcgaTGAAGGAGATTAACGAACTGTATTCTGTCTTCAAAGGAATTTACAAGAAGTGGAAGACTGATAATGTAATAATCTTAGGGGACCTTAACGCCGGCTGCAGCTACGTCACCATCAAGGGCTGGAGAGCTATGCGCTTGAGGAGCGACCCCAAATTTCACTGGCTAATTGGAGATGAGCAAGACACTACTGTCCGTGAGAAGACGCACTGTGCCTATGACAGGATCATTGTCCATGGACGTGAGATTATTTCCAGTATAGTGCCAGGTTCAGCTCAACCGTTCAACTTTAAAGAGAATTTTCATTTAACAGAGGAGGAGGCTCTTGAGGTGAGTGATCATTTTCCTGTTGAAGTTGACCTGAAGCCCAATCACCGCTACCTCCTACGCAGTGAGCTGTAGGACAACCATCAACAATCCCGGATGTCTTGATTTTAACTGTACTTTTACTGGATTTTAGttgtcaaaataaaatcaaaattcCCAACAGAA
>XM_039800827.1
CATTGTTCATTGTATTCAGTGGTTTTAACTGTTCCAGATAAAGCTCCATTCTCAACAGGCACTGACGCAGCACATCTACCACACAGATCTTTTGCCCACATTTACCTGCATGTTCCCCCAAATACACCACAGGTCATTGAAGAGATGGATCTTTGCTGGACTGAGTACAATCTCCTGGTGAAACTGCCACTGAAGAGCTTTGGTGAATCAAAGGCAAACAACAAGAAGGTCATGGGAATTCTCCTGAAGATTCTTTCTCGGTGTGACTTGTGTCTCATTCAGGAGGTCCGAGACTCCAAAGGAGCAGCAATACAAGCTTTGGTTAAGGATCTTAATGGCAGATTTGACAAATCCAACTCATACTCCTATGTGGAGAGTGAAAGGCTGGGGAGGAAGACCTACAAGGAGCAGTACGTCTACATTTACAGGAACAATGTGCTGACAGTCAAAGAGCATTATCAGTATCCTAAACTAGAAGGAGAAGGGACAAATGAAACAGATGTTTTCTCCAGAGAGCCTTTCATTGTTCGCTTTCACTCCCCTACGACACtggTGAAGGATATTGTCCTGATTGGGCAGCAtacttgtcccagaaatgcgaTGAAGGAGATTAACGAACTGTATTCTGTCTTCAAAGGAATTTACAAGAAGTGGAAGACTGATAATGTAATAATCTTAGGGGACCTTAACGCCGGCTGCAGCTACGTCACCATCAAGGGCTGGAGAGCTATGCGCTTGAGGAGCGACCCCAAATTTCACTGGCTAATTGGAGATGAGCAAGACACTACTGTCCGTGAGAAGACGCACTGTGCCTATGACAGGATCATTGTCCATGGACGTGAGATTATTTCCAGTATAGTGCCAGGTTCAGCTCAACCGTTCAACTTTAAAGAGAATTTTCATTTAACAGAGGAGGAGGCTCTTGAGGTGAGTGATCATTTTCCTGTTGAAGTTGACCTGAAGCCCAATCACCGCTACCTCCTACGCAGTGAGCTGTAGGACAACCATCAACAATCCCGGATGTCTTGATTTTAACTGTACTTTTACTGGATTTTAGttgtcaaaataaaatcaaaattcCCAACAGAA

Function

symbol description
dnase1l1 Predicted to enable DNA binding activity and deoxyribonuclease I activity. Predicted to be involved in DNA catabolic process, endonucleolytic. Predicted to be active in nucleus. Is expressed in several structures, including Kupffer's vesicle; forerunner cell group; hatching gland; polster; and pronephric duct. Orthologous to several human genes including DNASE1L3 (deoxyribonuclease 1 like 3).
dnase1l3 Predicted to enable DNA binding activity and deoxyribonuclease I activity. Involved in apoptotic DNA fragmentation. Located in endoplasmic reticulum and nucleus.

NR:

description
PREDICTED: deoxyribonuclease gamma-like isoform X1

GO:

id name namespace
GO:0006308 DNA catabolic process biological_process
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0004519 endonuclease activity molecular_function
GO:0004536 deoxyribonuclease activity molecular_function

KEGG:

id description
K11995 DNASE1L; deoxyribonuclease-1-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800824.1 True 1189 mRNA 0.44 9 23201625 23204113
XM_039800825.1 False 1175 mRNA 0.45 9 23201636 23204113
XM_039800827.1 False 1089 mRNA 0.44 9 23201619 23204113

Neighbor

gene id symbol gene type direction distance location
LOC120559240 LOC102793838 coding upstream 1140 23193386 ~ 23200479 (+)
LOC120559793 LOC104960090,LOC107090275,LOC107390786 coding upstream 25490 23170234 ~ 23176129 (+)
ampd2b LOC103367831,LOC100709506,LOC102200760 coding upstream 34129 23145686 ~ 23167490 (+)
gnai3 LOC103367862,LOC105931781 coding upstream 74707 23109930 ~ 23126912 (+)
gpr61 LOC104942230,LOC103367872,LOC101482146,LOC102303595,LOC100709777 coding upstream 97524 23099553 ~ 23104095 (+)
si:dkey-183p4.10 NA coding downstream 1274 23205387 ~ 23207331 (+)
LOC120559183 NA coding downstream 3810 23207923 ~ 23213985 (+)
gpr157 gpr157 coding downstream 73273 23277386 ~ 23281776 (+)
LOC120558415 slc2a5 coding downstream 80806 23284919 ~ 23292578 (+)
eno1a eno1 coding downstream 102591 23306704 ~ 23319684 (+)
G52403 atp5f1 non-coding upstream 8631 23140910 ~ 23192988 (+)
G52364 nfya non-coding upstream 178291 23020806 ~ 23023328 (+)
G52379 ahcyl1,LOC104942237 non-coding upstream 181611 23009177 ~ 23020008 (+)
G52342 rbm15 non-coding upstream 312932 22884049 ~ 22888687 (+)
G52333 NA non-coding upstream 354323 22834798 ~ 22847296 (+)
G52461 NA non-coding downstream 17813 23221926 ~ 23246504 (+)
LOC120558323 NA non-coding downstream 61118 23265231 ~ 23275195 (+)
G52509 NA non-coding downstream 243240 23447353 ~ 23447557 (+)
G52569 NA non-coding downstream 482239 23686352 ~ 23687361 (+)
G52604 NA non-coding downstream 585335 23789448 ~ 23790522 (+)
atxn7l2b kcnc4 other upstream 133140 22991252 ~ 23068479 (+)
lamtor5 lamtor5,LOC102787529 other upstream 354681 22842044 ~ 22846938 (+)
LOC120559933 NA other upstream 639098 22562154 ~ 22562521 (+)
G52210 LOC104964406,LOC106525460,LOC105931770 other upstream 641291 22556329 ~ 22560328 (+)
LOC120558641 LOC103363734,LOC104967523 other upstream 1106729 22090197 ~ 22094890 (+)
tmem201 tmem201,LOC102777799 other downstream 542252 23746365 ~ 23765165 (+)
ctnnbip1 ctnnbip1 other downstream 587334 23791447 ~ 23814406 (+)
LOC120559118 LOC102791662 other downstream 1736682 24940795 ~ 24945320 (+)
G52871 LOC104956590 other downstream 1749329 24953442 ~ 24957330 (+)
tprg1l tprg1l,LOC102784883,LOC106513028 other downstream 2539476 25743589 ~ 25748321 (+)

Expression


Co-expression Network