gmeb2 (gmeb2,LOC102776727)


Basic Information

Item Value
gene id gmeb2
gene name gmeb2,LOC102776727
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 36850850 ~ 36866302 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800964.1
aagaagaagaagaagaagaataaaagaGTAACCAACATCCAGTCTAGTGCAgatgaaattaaatgtattgcACGTGTAGTCCCCAAAACATTTAGTAGGTGGGCGGCTGTATTTTATTTGAACTATGAGCGAGACACCTGCCAGCTCAATGGACCTAACGTTAACTATTAACACTGTACTTTATTCATTTTAGCTAGCTCCGagtaaagctaacgttagctagctagcaaccaTCCGGTGGGGCTAACAGTCAACGCTCATATTTTCAACAAGCCGAGGCAACGTTCACCAACTAACGACCTAAAACCTAAAGCTCCATCTGTCCTCCATGGCGTCATCAGAGGTCAGCATGCAGGAAATGGGCGACATTGTGATCGTCACCATCCCAGAAACAGCGGCAGAGGACCTCCCCTCTGTGGTGGAGGAGGACAAAGCAGTGCTGGTGACGGCAGAGATGACTCCTCAACCTGGGGAGGAAATCCTCACAGTGGCACCGGTGGAAGAAGCAGAAGCTGAGGCCAGCGGAGCAGACTCGCTGTCGAGGGAAGAGGCTGTCATTGTGAAGTTATCTGAGGAGGTGGATGTGGAAGCTGATGTCTTCTACCCGATCACCTGTGGAGACACCCGAGCCACGCTGGTCTGGAAGAAGTTTGTCTGCCCTGGGATCAATGTCAAATGTGTCCAGTATAATGAGCAGCTCATCAGCCCAAAGGAGTTTGTGTGTTTAGCAGGGAAATCCACTCTGAAGGACTGGAAGAGAGCCATCCGCCTCAACGGCACCATGCTCAGGAAGATCATGGACTCGGGTGAGCTGGACTTCTACCAACATTCAAAGGTCTGCTCCAACACGTGCCGCAGCACTAAGATAGACCTGGTGGGAACCAAAGTGTCCATCAGCAGCGATCAGTCTGCCGAACTGGTTCCTGCCACCCCCTCGTCGGCTGATTTGAACGGAGCAGCGGCCTCGTTTCCGGAGGTGGAGGAAACGTCAGAGTGGGTCACAGCCATCGGAGAGGACTCTGTGGCGTTCTGGCGTGCGGTGAAGGAGGCTGGACTGCTGGATGAGGTGGTGGAGGACTTCCAGAAGGAGCTGCAGGAGGTGCTGAAGGGGTTgcaggagagagtgtgtgaccCACCCCTTCAGGTCAAAgATGCTGTTTTGCTCAACAACATAGTGCAGAACTTTGGGATGTTGGACCTAGTGAAGAAGGTCCTGGCCAGCCATAAGAGCCAGATGGACCGCTACAGAGAGCAGTACACTCGCAGCCTCGCCGCTCTGGAGCAGCAGTGTGACGAGCACAGGAAGCGAGCCAAAGAGCTGAAGAGCAAATCGCAGCACCTCAACAACGTCCTGATGACCCTCACCCCGGTCCCCGCGCCCCCTACGCCCAAGCGCCCGCGGCTGACCCGCGCCGTCTCCGGCCCGGCCTCGGTCAACGCCGCGCCCGCCCAGATCGCGCTGCCTCTCAGCCAGCTGTCCGGCCTGCCGCTGGGCAAGGTGCTGACGGTGGCTGGAGCGCCGCCCGGCGCCGCCAACCTGGGCGGCTACACCTTCCTGACCTCCACGCTCTCCGGGTCCGAGCTGGCGTCCGACGGCTCTAACCTGACCGTGCTGTCGGCGGCGGCGGGTCAGGAGTGCGCGACCGGCGGCTCCCCCGCCTCGGCCTTCGTCAAAGTGGTCGGCCCTCAGTTCCAGCTGGTGACGCTGCCGGCCGGGCTGCAGAGCTTGGCCATGGCGCAGTGCGGCGTCCAGCAGCAGGTCGGCAGCATCGGCGTGATGGATGCCACCGCGAGCTCTGCAGACGATTCTCAGGAGGAAGGCCAGGCTGTTGCTGACGGCGATGATGGCGGTCAGACAGAGCCGGCTAACGAGGGAGACGGGGAGCAGCCCGAGCAGCAGCAGTGAGGCAAACGCCAGCTGTTCTT

Function

symbol description
gmeb2 Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human GMEB2 (glucocorticoid modulatory element binding protein 2).

NR:

description
PREDICTED: glucocorticoid modulatory element-binding protein 2

GO:

id name namespace
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003713 transcription coactivator activity molecular_function

KEGG:

id description
K24505 GMEB; glucocorticoid modulatory element-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800964.1 True 1926 mRNA 0.58 10 36850850 36866302

Neighbor

gene id symbol gene type direction distance location
stk35 LOC105921027,LOC108249422 coding downstream 46180 36780301 ~ 36804670 (-)
lrif1 NA coding downstream 224881 36610137 ~ 36625969 (-)
si:dkeyp-110g5.4 NA coding downstream 244082 36599573 ~ 36606768 (-)
igf3 LOC108228312 coding downstream 262138 36581523 ~ 36588712 (-)
plch2a plch2,LOC106935153 coding downstream 403058 36272871 ~ 36447792 (-)
plod1a NA coding upstream 36775 36903077 ~ 36952279 (-)
LOC120559725 rpl22,LOC102779685,LOC106566811,LOC106572248,LOC100699599,LOC101484027,LOC102785448,LOC103376530,LOC102235575,LOC104936395 coding upstream 187485 37053787 ~ 37061695 (-)
tbc1d25 tbc1d25 coding upstream 290066 37156368 ~ 37172204 (-)
LOC120559612 LOC103363412,LOC108249421,LOC107391357 coding upstream 354232 37220534 ~ 37254041 (-)
mthfr mthfr coding upstream 431203 37297505 ~ 37329403 (-)
G56215 NA non-coding downstream 52654 36797443 ~ 36798196 (-)
G56197 NA non-coding downstream 92199 36757955 ~ 36758651 (-)
G56195 NA non-coding downstream 94379 36756213 ~ 36756471 (-)
G56191 NA non-coding downstream 97796 36752757 ~ 36753054 (-)
G56190 NA non-coding downstream 98149 36752445 ~ 36752701 (-)
G56213 NA non-coding upstream 4467 36870769 ~ 36879159 (-)
G56235 NA non-coding upstream 44786 36911088 ~ 36946922 (-)
G56245 NA non-coding upstream 109292 36975594 ~ 36980336 (-)
G56250 NA non-coding upstream 158632 37024934 ~ 37025355 (-)
G56265 NA non-coding upstream 200363 37066665 ~ 37118456 (-)
LOC120559655 mtch1,LOC102799640 other downstream 106718 36723238 ~ 36744132 (-)
G56160 NA other downstream 126641 36681899 ~ 36724209 (-)
LOC120559361 NA other downstream 290891 36557530 ~ 36559959 (-)
si:ch73-70k4.1 NA other downstream 952114 35874622 ~ 35898736 (-)
G55492 NA other downstream 1441084 35404604 ~ 35409766 (-)
rhoaa LOC106529366,LOC107558917,LOC102777028,LOC107687289,LOC103367639,LOC107599000,LOC103384870,LOC106572042 other upstream 18501 36884803 ~ 36895540 (-)
phc2a LOC103367632,LOC102778931,LOC100708466,LOC102197996 other upstream 118583 36984885 ~ 37001151 (-)
G56335 NA other upstream 506333 37372635 ~ 37373316 (-)
G56376 NA other upstream 702758 37569060 ~ 37839849 (-)
LOC120559227 esd other upstream 1015866 37882168 ~ 37900343 (-)

Expression


Co-expression Network